Array 1 90271-91098 **** Predicted by CRISPRDetect 2.4 *** >NZ_NAQX01000002.1 Dolosigranulum pigrum strain KPL1922_CDC39-95 NODE_3_length_94256_cov_91.477699, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 90271 36 100.0 30 .................................... AAAAATGTACGTGGTGGGGCTACTTCACGT 90337 36 100.0 30 .................................... CTTGCATCACAAGAGCGCGCAAACGGCTCT 90403 36 100.0 30 .................................... AAGCACCGTATCCAACGCTTAGGCCAGACA 90469 36 100.0 30 .................................... AAATCATCTATCTTTTCTTGTTGTTCAGCA 90535 36 100.0 30 .................................... GAATTAAGAGAGCGTATGATTGCGAAAGTC 90601 36 100.0 30 .................................... TGCAAGGAATAACAACATATCTGACCATTC 90667 36 100.0 30 .................................... AGAAAATGATGAATCTTTATAAGTATTCGT 90733 36 100.0 30 .................................... TGTTTTGACTCCTCCGCTTTGGAACGTGAA 90799 36 100.0 30 .................................... CGAGAAATCCTTTCTTACATCTGCACCATA 90865 36 100.0 30 .................................... CCAAAGAATAAAGACTTTAAATTCTTAGAG 90931 36 100.0 30 .................................... TTGCTTACGTGAACGTAATCGTTAGTTACC 90997 36 100.0 30 .................................... ATGAGCAAGGCAACCTGCCACCGTCATCAT 91063 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 13 36 100.0 30 GTTTTTGTACTCTCAATAATTTCCTATCACTAAAAC # Left flank : AAGTGATTTGGCTTGTCATCAGATATCCAGAAACTTATTTGGAGATAAATGATTATTTATCTTTTATTGAAAAAGTAAGAGTAATTGCTCAGGAAACAAAATTACTAAAAATGATAGTAATCCATTATAAACAATTAGATCCAAATATATACTCAGATGAGTTTATTGATAAGACAATTATCGCAACAAATCGATTTGAGCAATTACCTGAGATAGAGTATTTTAGAGATAATGTTCAAAAGTATTACCCAGATGAAATGACAGATACCGATAATATACTTGCCCAACGCTTTTATAGAATATCGCATCTCATTGGTGAGACAGAAATTTATAAAAATTCTACTATTTTCACAAAAGATATGGTATTATTAAAGGTGTTAGGGGACATATTAGAAATGCCGGTTACATTTGAGACGTCAGATGAAACGCTAAGTGCGTTAGAAACAGCATTTCTACTAGAGTAATATCAATCTCGAAAAAAATCATTTGGTTAATTTGAG # Right flank : CTTTTCTACCTCTAGCATCCACTCCTCGATAGTTTCCAAATTCGCTCCGATCAATTTCCGCCTTATGGTAGCTTGTTTTTAGTTGGACGGTGATTTCTTTTTCCGGTAAAATAAAGTTACCTTAAAAGCTTAGAGGAGTTATGATATGTTAGTTATGACTAATGAGAGTTTATATGAGATTAAGACGGTTTCGGAGCCGGTTGTTCATCAGGATCAGGTGTTTTTTGTTGAGACGTTGGTGGATGAAGAAGAGAATAATTATCAGAAAACAATTTACAGTGTGAATCAGAAGACGGGGGAGAAGGTGCATTGGGGTGATGGTGGCCAGAGCAATACCTCGTTGGCGCTGTCGCCGAATGCCAAGTGGTTGTCTTATCTGTCGACTAATACAGATAATAATAAGCCGCAATTGTTCATTATTCCGCTGTCAGGGGGTTCAGCGGTCCAATTGACGGAAGAAGAACAAGGGGTGAGCACGTATAAGTGGACGCAGAACTCAG # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTGTACTCTCAATAATTTCCTATCACTAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:72.22%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,-0.50] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [71.7-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.27,0 Confidence: MEDIUM] # Array family : NA // Array 1 170-2 **** Predicted by CRISPRDetect 2.4 *** >NZ_NAQX01000004.1 Dolosigranulum pigrum strain KPL1922_CDC39-95 NODE_5_length_102673_cov_72.725670, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 169 36 100.0 30 .................................... GCGATTAATGTGATGTTATACGGTATGAAC 103 36 100.0 30 .................................... TTTGATTTTTCTTCTTTCGCATCCAATACT 37 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 3 36 100.0 30 GTTTTAGAGCTGTGTTGTTTTGAATGACTCCAAAAC # Left flank : GACTAATCAAATTACTGAACTGATTAATGCAGAGGTACTGAATCATGAATTGGATTTAGAATTTGATGAAATTACAATCCAGGAAGTACTTATCGCTTTAGGAGTGAAGATAGAAGTTGATACAGATACACTATTTGAAAAGGTGTTGGAAATTTTTCAAGTCTTTAAATATTTGCGAAATAAAAAATTACTAATACTTGTAAATGCAGCTTCATATTTTACAACCGAGGAGCTTAATGAAATGGCACAGTTTGTCTCATTGTTACAGATGAATGTGCTGATGATCGAACCAAAACCGACTGATTCTGAGATAACACAATATATCCTGGATTCGGATTTCTTTTTAACCATCAAACATGGTAAAATGAAGTAGAAGATAAACTAGAAAAATAGGAGTCGTTCAAAGCTGAAGTTTTGCATGGACGAATGGCGTGATTACGAAATTTTGTGCAAATTTCTTATGAAAATCATGATTTTTTAGAAAAGAAATACTGTGCGAG # Right flank : CA # Questionable array : NO Score: 5.67 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTGTGTTGTTTTGAATGACTCCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.89%AT] # Reference repeat match prediction: R [matched GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC with 92% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-2.30,-2.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [1.7-75.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.77 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], // Array 1 273358-273189 **** Predicted by CRISPRDetect 2.4 *** >NZ_NAQX01000055.1 Dolosigranulum pigrum strain KPL1922_CDC39-95 NODE_92_length_273219_cov_74.105621, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 273357 36 100.0 30 .................................... CAAATGTGCTAAAATGAAGCTGCTTCGTCA 273291 36 100.0 31 .................................... CCAAGTCAACCCGGATCGACCATTCATCAGC 273224 36 94.4 0 ..............................T....T | ========== ====== ====== ====== ==================================== =============================== ================== 3 36 98.1 31 GTTTTAGAGCTGTGTTGTTTTGAATGACTCCAAAAC # Left flank : | # Right flank : GATTGGTCAGATAACTTATGAGATTTAGAGTTATAGTGTATTGATTTTTGATGTAATAATTATTAATGAAACATATAATCCTGTTTAATCTTCTAGTCAAACTAGCTAATTAAATAGGATTTTTGTTTATTCAGGAGACAAGCTACTTGTGAAGTATTTCCCGTGATTATCAGTCGAAATTGTGGTGGGAATATGCGATAATGTAGAGCAAGGAGTGATGGCTGTGAGTAAGGAATTGTTAGTATTGATCGATTATGAAGTGGATGTATTAGAGACGTTTCGAGAGATGGCTAGTGAGTATCAGTTGGTGAGTGAGTTTGAGGAAGCTGATTTTTCGAAGGTTGAGATCGTACTGGGTTGGGATGAGCGGTTAGTTGATGTGCTTGAGTCGGGTGAACATCAATTGAAGTGGATTCAACTGCCGACAGCTGGCGTGGACAAGTTGCCACTTGATTTATTAGCGCAAGAGGGTGTGCGGTTGACCTCAGCAAGTGGGATGC # Questionable array : NO Score: 5.26 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTGTGTTGTTTTGAATGACTCCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:65.71%AT] # Reference repeat match prediction: R [matched GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC with 92% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-1.20,-2.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [75.0-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.28 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //