Array 1 4229979-4230678 		**** Predicted by CRISPRDetect 2.4 *** 
>NZ_CP048605.1 Escherichia coli strain PapRG-06-5 chromosome, complete genome		Array_Orientation: Forward

  Position	Repeat	   %id	Spacer	Repeat_Sequence              	Spacer_Sequence                 	Insertion/Deletion
==========	======	======	======	=============================	================================	==================
   4229979	    29	 100.0	    32	.............................	GCGTGGAGTAACGGACAACTAAAACAGCCGGA	
   4230040	    29	 100.0	    32	.............................	GTGATATTTCCCCATAGTCACCATTCATTGCG	
   4230101	    29	 100.0	    32	.............................	CGTATACGTCAGGCCCGTACCCGCGTACCCCT	
   4230162	    29	 100.0	    32	.............................	CTCCAGCTCGATATCACACGACGCTATATCAG	
   4230223	    29	 100.0	    32	.............................	GAAACAGCGCCCGCCGGTGCTGCGTTACCGTG	
   4230284	    29	 100.0	    32	.............................	CCAACAAACTCATTTGCACTGGATTCGTGGAT	
   4230345	    29	 100.0	    32	.............................	ACCGGCGCAATTGTTTTTCAGCAGCACCCGGC	
   4230406	    29	 100.0	    32	.............................	ACGCTGGCTCAGTGCGCAGCAGCTATCAAACA	
   4230467	    29	 100.0	    32	.............................	TATTTTCTTTGTTGCGGTAGGCAATATCGCCA	
   4230528	    29	 100.0	    32	.............................	GTATTTTGTCACGACCAGCACGAGGCCGAATA	
   4230589	    29	  96.6	    32	.............C...............	CCGCAAAAGGTATTATTTTTATCCGTCAGTAC	
   4230650	    29	  93.1	     0	.............C..............A	|                               	
==========	======	======	======	=============================	================================	==================
        12	    29	  99.1	    32	GAGTTCCCCGCGCTAGCGGGGATAAACCG	                                	       

# Left flank :   CTGGATGAACTTTTGGCGACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACCCATAAATATTTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTCTTTGTCGTCTCTGAAAAACCTCCATTTTGCCCATCCTGAACTAATCATTATCATTCTCTACAAATTCTGTGGCGTTAATTTTTCACTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTGCCTTTTTAATCAATGGGTTAAGTGCTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTGTAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA
# Right flank :  ACCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCTGTACTTGTAATAAGCAACATATCCACGTAACACCTCATGTTCAAAATAGTTCCCCATGCCAGATAAGTTCACAATTATCGATACAAAAAATCAAATTTAATCAAAGTGTTATTTGTATAATCCTTAAACCGTTAAGAAATTTTAATATATTATTTTTTTAATATTAATTAATGCCTATTAATTTTTTCTTTAGAATAACAGTGTATTTTTTAAGCTTGTTATTCATTGATTAAGTAATAAATCTAGAAATTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATAACCGCCTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCTGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTTT

# Questionable array : NO	 Score: 6.21
# 	Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     GAGTTCCCCGCGCTAGCGGGGATAAACCG
# Alternate repeat :   NA

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         NA Score: 0/4.5
# 	A,T distribution in repeat prediction:     F [6,4] Score: 0.37/0.37
# 	Reference repeat match prediction:         F [matched GTGTTCCCCGCGCTAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5
# 	Secondary Structural analysis prediction:  F [-13.50,-12.00] Score: 0.37/0.37
# 	Array degeneracy analysis prediction:      F [0-3] Score: 0.41/0.41
# 	AT richness analysis in flanks prediction: NA [75.0-68.3]%AT Score: 0/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         F [5.65,0   Confidence: HIGH] 

# Array family : I-E [Matched known repeat from this family],   
//