Array 1 4329-3817 **** Predicted by CRISPRDetect 2.4 *** >NZ_MRTC01000001.1 Paenibacillus peoriae strain FSL A5-0030 NODE_1_length_668901_cov_1.55834_ID_4460, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ===================================== ================== 4328 33 100.0 37 ................................. AAAAATATGCAAAAGACAGGCTATTTGTGGGATTCAA 4258 33 100.0 34 ................................. ATCTCAAGCGTGATGCGCTCGATGATGTTGTACG 4191 33 100.0 35 ................................. TATAAACACGGCAAGAAGGGAAGTAAAGCTGTCTC 4123 33 100.0 34 ................................. AGTTTCTGAAGGGAAATTTGTCGGAAATATCCCT 4056 33 100.0 37 ................................. TGGCGGGACGTGGACGCATTTACGAACATTACTCAAA 3986 33 100.0 37 ................................. AGACAAATGGACCGGACGACCAGTGATATGGCCGCTA 3916 33 100.0 34 ................................. TGGCAATGTAGTCAACTTTAAATAATAAACCAAA 3849 33 97.0 0 ......................C.......... | ========== ====== ====== ====== ================================= ===================================== ================== 8 33 99.6 36 GTCGCACTCTGTATGGAGTGCGTGGATTGAAAT # Left flank : TCCATTTTTGTGGAAGTAGGTGTGAACACTTGCTCATTTTGATCACGTATGATGTAAGCACAGTAGACAGAGAAGGTAGAAAAAGACTGGCAAAGGTTGCGAAAAAGTGCGTAGATCACGGACAAAGGGTGCAAAATTCTGTGTTTGAATGTATTTTGGACTCGACCCAGTTCCGCAGCTTAAAGTATGAACTCGAAGAATTAATAGACCCAAAAGAAGACAGCTTGCGCTTCTACAACTTAGGAGATAACTACAAGAAGAAAGTAGAGCATATAGGGGCAAAGGAAGCTTACGATATGGAAAGCCCACTAATTTTATAAGGTGCGAATGTGAAGCTCACATAAAAACCCCAGGTCCTTCGCACCTCGAAATTTGTCGAAAAGCATTAGAATGCTGTCTATGAGAAAAAGTCAATAGTTGATACAAGCCTTTTTGACATCAGTTTTTGCGATAATGTGTGGAATTGATATCATTAGGGTATGAATTCCTGCATTTTCGCT # Right flank : TTGCTAGGACTTGAAGAATTAACAGTAGAAGCTAAAGTCGCACTCTATATGGGTGCGTGTTGGAGACGTAGTATATTTCATAAGGAGGTTTTGTATTGGCTCCGGCGCATTATCGCTACTTTTTGGAGTAAGGAAGAAGACAATGACGCTTTTGAGGCAGGTGTTCAATCTCTTCTAATGAAAATCTCAGAACAATACAAACTAACGTATGGCGAAAAAACACAGCTGCTTGCTTCAATGATACTAGAGTATTCGAAATACGTAATAAGATGCGAACGTCACAGTACAATGGATGAAGAAGGAATGTGGGAGTAATTGAGACAAATGCGGCACTGGAGTTGAACGAACTGGACTTGATAGAGGAGAGGAGGAGAGAATGAAAACTTCTGTATGGCTACATAATTATACTCAATTCACAGCCCTAGGACCTATTAGCACCGAAAACAGTACCATTTTGCGTGGCTCTAAGGGGGGAAGAGCAGCCACCTTAGAGCCAGTAC # Questionable array : NO Score: 9.24 # Score Detail : 1:0, 2:3, 3:3, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCTGTATGGAGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.52%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-2.40,-3.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [58.3-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : NA // Array 2 14208-13909 **** Predicted by CRISPRDetect 2.4 *** >NZ_MRTC01000001.1 Paenibacillus peoriae strain FSL A5-0030 NODE_1_length_668901_cov_1.55834_ID_4460, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ =================================== ================== 14207 32 100.0 34 ................................ GGACAGACGCTCCTGCATCGGCGTGGGTTGTTGG 14141 32 100.0 35 ................................ CTAAATTTGTCTAATGGATTATTCATAGGGTTGAA 14074 32 100.0 35 ................................ ATCTGACTGAATGACAGTATCTTATCCATCAAACT 14007 32 100.0 35 ................................ AACCACCCGAGGATCGGGCCGAAGATGCTATCAAC 13940 32 96.9 0 .......................A........ | ========== ====== ====== ====== ================================ =================================== ================== 5 32 99.4 35 GTCGCACTCTATATGAGTGCGTGGATTGAAAT # Left flank : AGTTCCGTATTCGTGTGAATGTCATCTATCCGGGTGCCATTTCGACGAATATTGATGAAACCACGGAGAAATCGGAAGGGTTAAAGCAAATTACCATCCCCGTCAAGTTTCCCGAAGGAGGGCAACCGTTGGCTGATGGGCCGGGTCAACCCGAGCAGGTAGCTGATTTGGTGACATTTTTGGCTTCTGATCATTCGCGTCACATTACTGGTGCACAAATTGTAATTGATGGGGCAGAGTCGTTATTGTTTTAGAAAATAGAGCATGCTCTGGGACGGAGAAATGTTTTGTGGTATCCTGAGTGTATTGTCTTGGTTACGGTGCGAATGTGAAGCTCACATAAAAACCCCGGGTCCTTCGCACCTCGAAATTTGTCGAAATGGATTCGGATTAGCTTTCTTCGTTAGAAGTCAATAGTCGATTCAAGCTTTTTTGGCATCGTTTTTTTCGAAAATGCATGGAATTGATATCATTAGGGTATGAATTCCTTCATTTTCGCT # Right flank : ACATAGGGAGTAGGGGGAAGATGCTGTTAAGCCTCTCATCGCACTCTATATAAGCGTAGGATTGAGGGGTGAGCGAGGGACAGGAATGTAGGGGCATATTCTGCTTAGAATCAGTAAATGAAATTAGGCCGAATATATTTCAGTTTTACATCAGATCATATATCCTACATATATCGAGAATCTTCAGAGATAAACTTCTGGGGATTTTTTTGTTTCTGTGTAATTTAGTTCATATAATAAAAATTTATGATATTTTATTTATTTGAAATTAATTTGTTAATAAATACAAAACAAACATGATATAAATGGGTCTTAGCTAAGAAAGCGCATTTATAGTATTCATCGACAGAGAGGTAGAGATATTCGGTTGGTGAAGGGAAGTTGCGCGTATTATGGTGGTGAGAATGGCACCCAGCATTTTATTGGATTATTTGCTTAAGAAGTTCAAGGTATAATTCTAAAAAGCGGTAACTGACTTGTATGTGTCTCCTATACAGCAG # Questionable array : NO Score: 9.03 # Score Detail : 1:0, 2:3, 3:3, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCTATATGAGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:56.25%AT] # Reference repeat match prediction: R [matched GTCGCACTCTACATGAGTGCGTGGATTGAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-2.60,-3.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [51.7-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,10.05 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 1086-1718 **** Predicted by CRISPRDetect 2.4 *** >NZ_MRTC01000013.1 Paenibacillus peoriae strain FSL A5-0030 NODE_13_length_207704_cov_1.32057_ID_4480, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ===================================== ================== 1086 32 100.0 37 ................................ CACTTGGCACGCTCTGCGTCTGTTACCCCGCTCTGCC 1155 32 100.0 34 ................................ AATTTTCGTAATTTTGTATTGTGCATAATTTAAT 1221 32 100.0 35 ................................ CAAAATGGAATGTCTGATAGGGGCGGTAGGGTTGA 1288 32 100.0 35 ................................ TGTTATTAGTTGCTTAGTATTATCAGGATAAACAA 1355 32 100.0 35 ................................ AGCTTTCCGGTGAGCTGTCCATGTGTTAGGCCGAC 1422 32 100.0 34 ................................ ATTATTTTGTAATTCAGAAGGCTTCCAAAATTTA 1488 32 100.0 33 ................................ CATCCGGAGAGCACCACGGCATGACGACCGCAT 1553 32 100.0 36 ................................ TGTAACCACCAATGCCGCACCAAACATATCCATCAC 1621 32 100.0 34 ................................ TCACTGTTTTGATAGCGCAGCTCATTGTATTTGA 1687 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ ===================================== ================== 10 32 100.0 35 GTCGCACTCTATATGAGTGCGTGGATTGAAAT # Left flank : GTCCTGTTTTTGATTAACAAGAAAATGATTAGATAAAGGATTTTACAAAAAAAGAAAATGGGCTGTCATGATGAAACGATGATATAAGGAAAATCGTAATGAAGGCATGGTACAATGAAACAGGATAGGATTATGTATCTCTATTTGAATGTATTTTGGATTTGACCCAATTTAGACGTTTAAAGTATGAACTAGAAGAATTAATAGACGAAAGAGAACTTAGCCTGCATTTCTACAATTTGGGTGATAGCTATAAAAAGAAGAAGAGCATATAGGGGCTAAGGAAGCTTCCAATATGGAAAGCTCACTGATTTTATAAGGTGCGAATGTGAAGCTCACATGAAAACCCCGGGTCCTTCGCACCTCGGAATTTGTCGAAAAGTATAGAAAATGCTATCAGTGAGAAAAAGTCAATGGTTAATTTAAGCCTTTTAGACATTGCTTTTTTCGAAAATGCATGGAAATGATATCATTAGATAATCAATTACTGCATTTTCGCT # Right flank : TATGATGAATGGAGGACGTCCTCAAGAAAGAAATAGGCGCACTCCATGTGACAATTGACGATGCGGCAGGATTCACGGTCAGTCGTTACGGCATATGGTTTTGTTTGACTGGTATGCTTTGCATAGTTCTCAGGGCTTCAGCCGCAGAAGGAAGAAAATAAAATCGAAGTGAAACGATCTTTGTGATATGTATAATGCTCGCAATGGGCGCGATGAGAGGCAATGATGCGGGGGAATGAGGCAAGAATATGAGGGCGTACAGGGGATAAAATGCGGAAGAACCACCGAAGGATGAAAAATCCAGTGCGGTGGTTCTTTTTTTTTACTCGTCTTGTATGCCATCATTATAGGGGGAGGGGATGAAGGATGTTCCAGGATTTCAAGCTCGTAAGTGACCGGCCGGTCTCGATACAAGTAAAAGAATACGTCAATCGTTTAATTATAAAAGGGGCGCTTCAGGCGGATCAGAAGCTACCTTCCACACGAGAAATGAGCGTTCT # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCTATATGAGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:56.25%AT] # Reference repeat match prediction: F [matched GTCGCACTCTACATGAGTGCGTGGATTGAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-3.40,-2.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [70.0-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.64,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 6277-7429 **** Predicted by CRISPRDetect 2.4 *** >NZ_MRTC01000013.1 Paenibacillus peoriae strain FSL A5-0030 NODE_13_length_207704_cov_1.32057_ID_4480, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 6277 32 100.0 36 ................................ ACATTTCAATTCGTTTGGAATATCCTCAACTTCCAT 6345 32 100.0 35 ................................ ATCCATCATACTGAATAAACATGCAATGGCGAACG 6412 32 100.0 34 ................................ TCTGTCGGAAGAATGTTAAATTTACCCGGGTGAA 6478 32 100.0 33 ................................ CACGGTGACCGTCATACTACCAGTAGCCGGAAA 6543 32 100.0 33 ................................ GATTTAGCTAACCATGTGGCCATAAATACTATC 6608 32 100.0 35 ................................ CCGTCGATACGCTCAAACAGATACCCGGCCTTTTC 6675 32 100.0 36 ................................ CATTGTAAAAAATACGTTAACAGACTAAAATAATCT 6743 32 100.0 33 ................................ ATATTGATTACAAGGGGTGGAAAACAAATTGAA 6808 32 100.0 35 ................................ AAGGTGTCTACCGTAGATATATTCGGCAAGGAATA 6875 32 100.0 36 ................................ AGCAAGCTCATGAATGGTCTTTTCGCGCTCATGCAG 6943 32 100.0 35 ................................ CGGCACCTACCAGGAAAGGAGTAATGAGACATGGG 7010 32 100.0 34 ................................ TTTGATGGTAGTAAACTATTTTTTAGCGATGGGG 7076 32 100.0 33 ................................ CAGCACTGGTCAGTCAGGCCTACCAACGCTATC 7141 32 100.0 36 ................................ CCAACCACAGGACGAGCCCAAAGGAATAAAGGTCAA 7209 32 100.0 35 ................................ ATGAGTTGGATAAGAAGAAATTAAAGAAGAGAATA 7276 32 100.0 35 ................................ CACCTGAAGGAACAGCATTTAACGAAAAATCAGAA 7343 32 100.0 22 ................................ CAGTAAACAATGAAAATCGCAT Deletion [7397] 7397 32 87.5 0 CG............A.............G... | C [7423] ========== ====== ====== ====== ================================ ==================================== ================== 18 32 99.3 34 GTCGCACTCTATATGAGTGCGTGGATTGAAAT # Left flank : AATGCAGCCGGTATGATGAACAGGATTAATAACTCAACTTTTGCCGAACGTTTTCATAAAATATTTTACAAATACCTTTATGATTTTCGAAAATATAAAGGTATTTTTCTGATCAATGTAGTCGATATTTCCGGATGTATTTACCCAAAGCCAGAACGTTCAGCTTTGGTGTTAACTGGTGGGACCCTGCTTTTAAAAGCGCTATCGATGAATTAAATATATTCGAATGTGCGCTTACTCCTTCACAGGTGGCAGAACTGGCAGAGGTGAAATAAGTCCAGGCAGGTATTTGTTGCTAAGCCAAAAAGCGAGTCTGTCCAGGTGCGAATGTGAAGCTCACATGAATTCTCCGAGAGATTCGCACCTCAGATTTTGTCGAATTATATCGAATATGAACAAGTTTTAAACGATCGCAAGAGGATAAGGTAATATTAGATGCGTTTTTGCCAAAATAACGCTAGAATGGTACTTAAATAGGGGGCATTTGACCCATTTTCGCT # Right flank : TTTGTTGGCTGCTAAAAGGTTTGGTTTAGAACAAGTCGTGGTTCAGTACAGTCAGCATTTTCATTTTACAAACGAAGATTTGCACGAGGAGGATTATATGAATAAAAATGATGATCGTCATGATAACACCCCAGAATAAAGAAGGCAGTCGAAAATATAGACGTACTCTTGATAAACTTTCTAATACATAAATAATCAGTCAAATAAAACGCCGTTTGGAACGGAGAAAGCAATCACTATTTATCAAGTTTGTCCCTAATTGACAATGAAGTAGGTTGGGTTATTTTTATGAACGTAAGGAATTTGAAATTCACAAATCTAATATTTAACAGTAAAGCTGATCCTAGAAAGGATCAGCTTTACTGTTTACCCATTCCACTATACAAGTAAAAGTACTTTTTTACTTGTGAGTCTTTAGCGTTCTGCCCTTAAAGAGAATATACGACAGTTCATGTTTGATAATTTTTTTATTCTCTATTGTTTTCACATAATCTATGTCA # Questionable array : NO Score: 9.18 # Score Detail : 1:0, 2:3, 3:3, 4:0.96, 5:0, 6:0.25, 7:-0.03, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCTATATGAGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:56.25%AT] # Reference repeat match prediction: F [matched GTCGCACTCTACATGAGTGCGTGGATTGAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-3.40,-2.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [61.7-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.78,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //