Array 1 612319-613343 		**** Predicted by CRISPRDetect 2.4 *** 
>NZ_NBTN02000002.1 Aggregatibacter aphrophilus strain FDAARGOS_248 scf7180000000011_quiver_pilon, whole genome shotgun sequence		Array_Orientation: Forward

  Position	Repeat	   %id	Spacer	Repeat_Sequence                	Spacer_Sequence                          	Insertion/Deletion
==========	======	======	======	===============================	=========================================	==================
    612319	    31	  96.8	    33	.T.............................	TTTCGGCGAGGGCAACGAAGCGGATTTAAACCC        	
    612383	    31	  96.8	    34	T..............................	ATCAAAATACAAGTTTCCGTGATAACTTTGCGCC       	
    612448	    31	 100.0	    34	...............................	ATTTCACCAAGGAAAGCGCATTAACCGAATTAAC       	
    612513	    31	 100.0	    34	...............................	GCATAAACATTTTGCGCCATGGGAGCAACATGAG       	
    612578	    31	 100.0	    34	...............................	GTAGAACAGATGGCGAGGAATGGCGCGCCTTTTC       	
    612643	    31	 100.0	    34	...............................	ATTGACGAAGCGTGGGATTGGATTAAAAATCTTT       	
    612708	    31	 100.0	    34	...............................	CTTTTATATCTGTTATCGACATCGGTCCATCATC       	
    612773	    31	 100.0	    41	...............................	CTGAACTTTTTAACGATGAATTTAGGCATATATTATTACTC	
    612845	    31	 100.0	    35	...............................	CTGAACGCCTTTAGAAATATTGTCAACGCATTTAC      	
    612911	    31	 100.0	    34	...............................	AGAATGATTTGGAAAGATGAACCTCACTCCAAAG       	
    612976	    31	 100.0	    37	...............................	GCTCCGTACAGTTATTGACAGAACTCCAAGGCGGGCG    	
    613045	    31	 100.0	    34	...............................	GGCAAGGTCAGCAAAAACTTTAAATTAACAATCG       	
    613111	    31	 100.0	    34	...............................	GATGTGGTGCATTATACGAATTTTTTTTATCCTG       	
    613177	    31	 100.0	    37	...............................	ATTTTTAGTTTTGAGGGGTTGTACTGTGAGCGATTAG    	
    613246	    31	 100.0	    35	...............................	CAACCATCCCCACTAGCCTCGTCACCATTACCCAT      	
    613313	    31	 100.0	     0	...............................	|                                        	
==========	======	======	======	===============================	=========================================	==================
        16	    31	  99.6	    35	GCAGCCGCCTTCGGGCGCTGTGTGTTGAAAC	                                         	       

# Left flank :   TTTGATGAGATAAGCTATGTTAATGCTGATTACTTATGATATTTCTTTTGACGATCCAAACGGGCAAGCGCGATTGCGTCGTATCGCAAAACATTGTTTAGATTACGGCGTGCGGGCGCAATATTCGGTATTTGAATGCGATGTCACGCCTGACCAGTGGGTTATGTTGAAAAACAAACTGTTGGAAACCTACGACCCTACATGTGACAGCCTGCGCTTTTATCATTTAGGCAGTAAGTGGCGTAATAAAGTGGAGCATCATGGAGCAAAACCGGCAGTGGATGTATTTAAAGACGTGCTTGTCATTTAGTTCGCTAACCTGTTGTTCTCATTAAAACCCTGATAGGATAGCGATCTTTATTTTCTTTAACAATTTGGATGAGTTAATCTATTTGTATAACGGCAATGTGGCCGTTATACTGACTAAACTCCTTATCATAAAATCAGTTAGCGAAATACAGTGTTTAATACGCTGATTTTTCTTGCTTTTTTATGTAGGG
# Right flank :  ACTACAGGGGAAGATGTGAAAAAAATCCCGCACGAGGGCAGCCGCCTTCGGGTGAGTATATATTTTGTCTTTACGAAAAATAAGTGATCTATAAGTTTCAAGCCTTTCTACAAAAACGTCTGGAAAATCCACCGCACTTTTCTTTCATAAAAATAAAAAGCTGAACCTCTTTCGAGATTCAGCTTTTCTTTTTGGGTCAGATTATTTTAACCGCTCTTTTTGTTGACCTATGCTGAAATATTATTACATTTTCGGAATTTCAACGCCTGAAGAGAGCAGGTCTTGAATATCCGATTTTAGTACATCAGCTTTTGGCCCATAAATGGCTTGAATGCCAGTGCCTTTGACGATAAAACCCATTGCGCCTGCTTGTTTCCAAGCTGCTGCATCGCCCACCAGCTCAGGGTTGTGAACGGTGATACGTAAACGGGTCATACAAGCATCTACCTCAGCAATATTATTGCGTCCGCCAAGAAGATTGATGATTTGCACCACTTGCG

# Questionable array : NO	 Score: 6.24
# 	Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     GCAGCCGCCTTCGGGCGCTGTGTGTTGAAAC
# Alternate repeat :   NA

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         NA Score: 0/4.5
# 	A,T distribution in repeat prediction:     R [4,7] Score: 0.37/0.37
# 	Reference repeat match prediction:         F [matched GCAGCCGCCTTCGGGCGGCTGTGTGTTGAAAC with 97% identity] Score: 4.5/4.5
# 	Secondary Structural analysis prediction:  F [-5.90,-5.60] Score: 0.37/0.37
# 	Array degeneracy analysis prediction:      R [2-0] Score: 0.41/0.41
# 	AT richness analysis in flanks prediction: F [68.3-46.7]%AT Score: 0.27/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         F [5.14,0.78   Confidence: HIGH] 

# Array family : I-C [Matched known repeat from this family],   
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