Array 1 45834-48312 **** Predicted by CRISPRDetect 2.4 *** >NZ_MKDE01000008.1 Latilactobacillus sakei strain RI-404 20150709.B-R404_R1_contig_8, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 45834 36 100.0 30 .................................... ATGACTCAAAGACTACGTATGACACAATCA 45900 36 100.0 30 .................................... ATGATATGAAAAGCATTCAATTAGACGGCG 45966 36 100.0 30 .................................... TTTAAATCGTGGACGTCTTCGTCGATATCG 46032 36 100.0 30 .................................... TTCATTAAGGTATATACTTTTTAATATATA 46098 36 100.0 30 .................................... CGGTGCTGAGCGAGGGATTATCCTTTCAGC 46164 36 100.0 30 .................................... ACTATTGGCATATTAGCAACAATAGTATTA 46230 36 100.0 30 .................................... TTGACGAAAAGAAAGTATTAAAACCAATTG 46296 36 100.0 30 .................................... CAGACGAACAACAGTTGTTCTATGACAACT 46362 36 100.0 30 .................................... TACTTCAAAGTTCAGATGCACATGAACTTA 46428 36 100.0 30 .................................... ACCAATTAGAATAACCAACGTTAAAACAGC 46494 36 100.0 30 .................................... AGCCTGAATTATTATTGAGTGGTAGAGTTT 46560 36 100.0 30 .................................... TATCCAATTGAAACGCTGTCGCCATAATCT 46626 36 100.0 30 .................................... ACAATATTGAAAAGAGGGAAGATACTATGG 46692 36 100.0 30 .................................... ACTTTAATGTATCAATTGATTATCTATTAG 46758 36 100.0 30 .................................... CCTCACAGCTCAAGTCTGACAATTGGCGAT 46824 36 100.0 30 .................................... AAGAATATACAGGAGGCCTATAAGATATGG 46890 36 100.0 31 .................................... TGGTGCAGATCGTGGGATTATTCTTTCAGCA 46957 36 100.0 30 .................................... TTACGTCGACCTTTTTAGCAACTTCTTCTT 47023 36 100.0 30 .................................... AGCGCAACAACAACGCTGATAAGCACGATT 47089 36 100.0 30 .................................... CAAGAAATTGAAGTAGTTGAAGATGCTGAA 47155 36 100.0 30 .................................... TGTTAGACCGGTTTGGCGGGTATTATCGTA 47221 36 100.0 30 .................................... AAGGGATAGAGTGGTGCCGGTCGGATTATC 47287 36 100.0 30 .................................... TTACTTCGTTTGTAGACTATAATGAGCTTT 47353 36 97.2 30 ............................A....... TGAATACTACGGGAAACCGTTTAAAGACGT 47419 36 97.2 30 ............................A....... TGTGCTTCAACCTTGTCCAGGCGGTGCTTA 47485 36 97.2 30 ............................A....... TTTAATATCTTTGTTAAAATCTCGATAATG 47551 36 97.2 30 ............................A....... ACAAACCATTGTTAACCACTGCCGTTTTAG 47617 36 97.2 30 ............................A....... TTTTATCATCCCAAATTAAACTATTCCATT 47683 36 97.2 30 ............................A....... CAATTGTCGAATATGATAATAAACTGCACG 47749 36 97.2 30 ............................A....... AAGAAGTTATTACAATCTGGGACAACGACA 47815 36 97.2 30 ............................A....... AGAATACTATTTCACGCCTTAAAGGATTGG 47881 36 94.4 30 .........................G..A....... GCTAATTTATTGGCAGATTCTAGATCAGTA 47947 36 97.2 30 ............................A....... ATTAAATGGGATTTTTTAAACCGGTGAACA 48013 36 97.2 30 ............................A....... CCTACTATCATTTAACTGGCGACGTTGGGT 48079 36 97.2 30 ............................A....... TGAACAGTTTGATGGGTCAGTTAGGATGAT 48145 36 97.2 30 ............................A....... TGTTCAGGATTAATCTCGCCGCCTTTCGCA 48211 36 94.4 30 ..........................T.A....... ACGGTTCAAGAAGATTTTACAAAGTGGTTT 48277 36 88.9 0 ...........................CA....G.T | ========== ====== ====== ====== ==================================== =============================== ================== 38 36 98.5 30 GTTTTAGAAGAGTATCAAATCAATGAGTGGTTCAAC # Left flank : AACGATTCTGAGCACGAGTAGTCCGTCTGTATATACTAAATTAATCGCAGGGGCCTCTGGTCAAGATGATACACTTCATTTAAGCGATGACCATTATCGGTTACTAGAATATATCAAAGGGATGATTTGGATTGGTGAAATTTCAGCGGTTGATTTAAATCATCTTTTTCAAAATAAGTTGATCAAAAAATTTACAGCCGATCTAACGGATGAACAACGACAAAAGGTAGTTAATCTGAATAATGAATTACGAGCCACTATTTTAGAAGCCGCGTTTATGTATGAATTAGCTTTAGATATTGACCATGAGTTAGATTTGCAAAAGTTAATTAAATTTTGCAATTTAAAATTTTCGAATGATGTTCAAGATGATCCATATGGTATAATAGAAAGCATAGTACAAACTGCTATAGAGTTACAAGAAACAAGAATTATCACATTGATAATGATTATGTTGAATGGCGTTACGAATAAAGTGAGTATTTGATGAAAAAACATCG # Right flank : TCACGCTAATAATCGTAAATTCTTTTAATTTAAGTTTGGGGAGTACCTTTAAAGGGGTACTCTTTTTTATTAGATTTAATGCATATCCTTGATTGATATTTCACGATTCGACTATTGAAAAGCGTTCTCATTTAGCTTAGAATTAAGTCAGCAACAACGTGCTATAATGCGATTTTTGGAGGGTCAGTAATGTCTAAATTAGAAATTATCGATTTACACGTCGGAATTGACGGTAAAGAAATTTTAAAAGGTGTTAACTTAGAAATGAATACGGGTGAGATTCACGCCATCATGGGACCAAATGGGACCGGGAAATCAACCCTTTCAGAAACCATCATGGGTAATCCTAAATATGAAGTACTTCAAGGTGAAATTAAATTAGACGGTCAAAATATTCTTGAAATGCCAGTTGATGAACGAGCACGCGCTGGCTTATTCTTAGCGATGCAATATCCATCTGAAATTCAAGGTGTTACGAACGCTGAATTTATGCGAGCTGC # Questionable array : NO Score: 3.19 # Score Detail : 1:0, 2:0, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAAGAGTATCAAATCAATGAGTGGTTCAAC # Alternate repeat : GTTTTAGAAGAGTATCAAATCAATGAGTAGTTCAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,-0.60] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0 Confidence: MEDIUM] # Array family : NA //