Array 1 246710-246192 **** Predicted by CRISPRDetect 2.4 *** >NZ_WHXZ01000005.1 Salmonella enterica subsp. enterica serovar Anatum strain M-9196 NODE_5_length_360633_cov_56.853184, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 246709 29 100.0 32 ............................. GACCACGACTGGAGTGATCAGATCGGTGTGGT 246648 29 100.0 32 ............................. CGAGCGGTACAACTCCAGCATTAATCCCCACC 246587 29 100.0 32 ............................. CGGCGAATCAGTACGAGGGACGGCTGGCGCTG 246526 29 100.0 32 ............................. CGGTTCCGTCATTGCAGATCCCCCACTTCATC 246465 29 100.0 32 ............................. GACGCGTCTTTTCCACAGCAGGACTCTAAATC 246404 29 96.6 32 .............C............... TACGCCAGAGGAATGGCTTTCAGTGTTTTGGT 246343 29 96.6 32 .............C............... GAGCGGCTAAACGATGAATTAACCAGGGAGCG 246282 29 96.6 32 .............C............... TCGCACAACGCCTGGATATCCGCCCATCGGCC 246221 29 93.1 0 ............TC............... | A [246194] ========== ====== ====== ====== ============================= ================================ ================== 9 29 98.1 32 GTGTTCCCCGCGCTAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTTGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGAAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTTGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCAGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCTAGCGGGGATAAACCG # Alternate repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCTAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 264577-263024 **** Predicted by CRISPRDetect 2.4 *** >NZ_WHXZ01000005.1 Salmonella enterica subsp. enterica serovar Anatum strain M-9196 NODE_5_length_360633_cov_56.853184, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 264576 29 100.0 32 ............................. AACTGAAACCAGGCCAGGTGATATTTATCAAA 264515 29 100.0 32 ............................. CCGAGTGTGAGCAGGCTATTTATGATGAGCGC 264454 29 100.0 32 ............................. GGCTCCGAATGTGAAGAATCCGACGCTATTGA 264393 29 100.0 32 ............................. GCCAGCGCGCCTGCGGCAGCACCGGCAGCAAT 264332 29 100.0 32 ............................. CGCATTATTAATGGCGTTGATGTTCTGGCGGG 264271 29 100.0 32 ............................. GTAATCAATCTCATATAGAGCGGGGGGGGGAT 264210 29 100.0 32 ............................. TTGATTGATCGTTATCAATGGGGAAAGAGATG 264149 29 100.0 32 ............................. TAATACCCGATCGAGCGCACTGTGTCGCCGGA 264088 29 100.0 32 ............................. CGCGAGCAATTCCATCTGACGTTCCGGAGACA 264027 29 100.0 32 ............................. GTCATCGTTATACACGTGACGGTTTTAATAGT 263966 29 100.0 32 ............................. AAAATGAACAGCCACACATCCGCCAATAAAAA 263905 29 100.0 32 ............................. GCTGTCGGTCGCAGTGTGGATATTGCGATCAA 263844 29 100.0 32 ............................. GGGCTGAACGGCGATCTGATTACGTGGAGTAA 263783 29 100.0 32 ............................. TACGCCAGCTATAAGGGGTACACGAACAGCTT 263722 29 100.0 32 ............................. GCCCGAGAAAAGTTGCTTCTCTTTGCTGCTGC 263661 29 100.0 32 ............................. CATACCCTGTAGTTTCAATTTCCGCAGGTGGG 263600 29 100.0 32 ............................. AGCGCGGAATGATTTTTAACGCTGAGATGGTG 263539 29 100.0 32 ............................. TACCGCGACACCGTCAACGACAGCAACCACTT 263478 29 100.0 32 ............................. GCGCAATTGCAGTTTGACGCGGTGCTGTCATT 263417 29 100.0 32 ............................. TGTCTTAACTCCATTGCTGAGTCGATTGTGAA 263356 29 100.0 32 ............................. CACACAGAACGCCAGTTATAATCATCGGTGCT 263295 29 100.0 32 ............................. TCGTTTGTGGCGTCAGTAATACTATTATCGGT 263234 29 96.6 32 .............T............... TTTTTAAATCCGGACAGACCCTGTAACGGATC 263173 29 100.0 32 ............................. ATCCGACTGTATGCCCAGCAGAACGAGGGCGC 263112 29 96.6 32 .............T............... CACGAGTGGCAAATTGATTTCGACGAAAAACC 263051 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================ ================== 26 29 99.1 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACGGACGGCCTGCCGATGCCGTCTGTGACTTATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCGGATAAATTTTTCCATAGCGATGCATGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTAGTGCTGATAAAAAGTAGTTTATAAACAATGATATCCGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGATTAAGCCTGTTGGTCGAGGATGAGTCTACGTCGATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGATCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGGACCCCTGCCGATTGGC # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //