Array 1 39284-39049 **** Predicted by CRISPRDetect 2.4 *** >NZ_POYB01000008.1 Neisseria subflava strain C2014021188 C2014021188_S45_ctg_1246, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 39283 36 88.9 30 T...G..GC........................... AAACAGCGACTGATTATGTTGTGTCTCAGA T [39277] 39216 36 100.0 30 .................................... GGCTTTAAGGGCTTCCTCTTCGTCTTCAGA 39150 36 100.0 30 .................................... GCGGCATATTGTTGGCAGCCTCTTTTATCA 39084 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 4 36 97.2 30 GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT # Left flank : TGACATTAGGTTCTAAATTAGAAGCTTGGCCGCCTGTAGGCTTAGAAAAGCCGTAAGTTTGAAGATTAAAGGATAATGACATGCGTCATCGTAATGGCAACCGCAAATTAAACCGTACTAGCAGCCACCGTGCTGCGATGCTGCGCAATATGGCGAATTCCTTGTTGACTCACGAAACCATCGTGACAACTTTGCCTAAAGCAAAAGAATTGCGCCGCGTAGTTGAGCCCTTGATTACCTTGGGCAAAAAACCTTCTTTGGCAAACCGTCGTTTGGCTTTTGACCGCACTCGCGATCGTGATGTTGTAGTTAAATTGTTTGACGAATTGGGTCCACGCTTTGCTGCTCGTAACGGCGGCTATGTTCGTGTACTGAAATACGGTTTCCGTAAAGGCGACAATGCTCCTTTGGCATTGGTTGAATTGGTTGATAAAGCAGCTGATTCTGCTGAATAAGCACATTAATATGAAAGCACTACCTGTTTAGGTGGTGCTTTTTTA # Right flank : AATTCGTTTTTCCTTGTACGGATTAAACGGGTTGTAGCTCCCTTATATATTTCGCTCCATCGAGGGGCGCAATTTTTTACACTTCTTATAGAACTTTAAGCCCCTTTAACTCTAGCCAGTGAAGGGGCTTTCTTATGTGCATCGCATTTTATACAGTCAATTCAGATAGTTTTTACAGTTTTGAAGAACAAAGAGCCGTTATCGTCCGCGTTTTCAAAGATGATGAGCTTGTAGAAACCGTTTCATTTCCTATTACAAATCCCAAACAAAAATATAAAACAGAAAAACAGGCTGAAGAGTATGGCCGTCTTGCTGTCCGTTCTATTTTGAACCAATGGGAGGCAGACGCATGAGAGCCGAAGAGAGAGCAGAAACGGCGGGGGCGTGTGGGGGCGCGCCTTGCGCGCCGCAAACGGCCACGCCGTTGAATGCCCCCCCTAGGCTAATAGGGGGGGAGCAAAAAAAACCTAATCCACAAAGTGGGGAGCAAACCGAAAAAA # Questionable array : NO Score: 5.72 # Score Detail : 1:0, 2:3, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:57.14%AT] # Reference repeat match prediction: R [matched GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [61.7-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,4.5 Confidence: HIGH] # Array family : NA // Array 1 49020-50721 **** Predicted by CRISPRDetect 2.4 *** >NZ_POYB01000003.1 Neisseria subflava strain C2014021188 C2014021188_S45_ctg_1236, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ====================================== ================== 49020 32 90.6 34 ...........CG...T............... ACGCCGTATGTACAAATGGTGGGCTAAAGAATCA 49086 32 90.6 34 ...........CG...T............... AAGAATTAACCGAACTTCGCCACCACGGCCATAC 49152 32 90.6 35 ...........CG...T............... TTAGTATAGGGTTTATACATGCGCAATATATCCCC 49219 32 100.0 35 ................................ TTAATATAGGGTTTATACATGCGCAATATATCCCC 49286 32 100.0 34 ................................ ACATAGCCCGCAAACACATTTTTTAAACATTTCC 49352 32 100.0 35 ................................ TCGCCAAACAGTGCGTCCATCGCGCCCAATCGGTC 49419 32 100.0 34 ................................ GGAATCCGCTGATTGATGCGGTGTGTAATGCCGT 49485 32 100.0 35 ................................ GTTGAAAAATCCTGCCAGCTTCTCAAGCTCGTTGA 49552 32 100.0 34 ................................ ATTGCTTCTGCCGCGATAGTCTCGCCGTCCGAAT 49618 32 100.0 36 ................................ GCCATTCGTTGCTCCCAAAAAAAAGCCGCCCCACAA 49686 32 100.0 34 ................................ CGTTTAAAAAAGAATGATAAAGAAATTCTCGATT 49752 32 100.0 35 ................................ ATTATGGCGGTCAGCGAGAAACAATGCTGGTTGAA 49819 32 100.0 34 ................................ TGCTGCCGGTCGGCCGCAACCTCTACAAAGAGTA 49885 32 100.0 35 ................................ ACTAAAACAGGATTCCATGTTGATGGTGTTATGTA 49952 32 100.0 35 ................................ AAAACATGGGCAGAATTTAAAACATGGGTAGATGC 50019 32 100.0 35 ................................ CATCACAAAATGCAACGGAAAGGATTTGCAACAGG 50086 32 100.0 38 ................................ GGGGGCGGCTAAAGATGAAGAGAAGCGTTTTTAACTGA 50156 32 100.0 35 ................................ GGGGCGGAGGAAGGCAGATTTTGCAGTTTCTCCAC 50223 32 100.0 35 ................................ GTCATTTAGAGGTAAAGCCAGATATAAAAATGGAC 50290 32 96.9 35 ...........C.................... TTGTGATTCCTCTAAAGAACAACCGCAAAAGACAA 50357 32 90.6 36 T..........C.........A.......... TTTTAATTGTTGCAGCAAATTAACCAGCTTATAGAG 50425 32 93.8 34 T..........C.................... TTCGCGCATCAGGCGCGTGCCGATGCGCGTGAAC 50491 32 90.6 33 ......A....CG................... CGCAAGGGCGATATGATCGTGATTTCCAACCGT 50556 32 90.6 35 ......A....C...T................ CGCCCATGATGCTAAAGCAACCTTGGAAAAGCTTG 50623 32 78.1 35 A.....A....CG..TC..........A.... TCTAGCAGCTACAAACTTTATGCCGACCTATCCCG 50690 32 78.1 0 T....A.....CG..A...........C...T | ========== ====== ====== ====== ================================ ====================================== ================== 26 32 95.8 35 CCAGCCGCCTTTAGGCGGCTGTGTGTTGAAAC # Left flank : GTATATGGGAATACAAAATGCTAATGCTGATTACTTACGATATTTCGTTGGAAGACGCGGACGGACAGGCAAGGCTACGGCGCGTGGCGAAATTGTGTTTGGACTACGGCGTGCGCGTGCAGTATTCGGTGTTCGAATGCGACATCGCGCCCGACCAGTGGGTTGTTTTAAAAGACAAACTCTTGAAAATCTACAACCCTGAAACCGACAGTCTGCGTTTTTACCATTTAGGCAGCAAATGGAGGCGGAAAGTAGAACACCACGGCGCAAGACCGGCAGTAGATGTGTTTAAGGATACGTTGATTGTGTGAATCGCCAACCTGCGGTTCTCATGAAAATGCGGCAGGGTTGGCGAACTGGGATTGTTCTTTAACAATCAGGATATTGCGAATACGGACGCAACGGAAAAGGCTGTGTTATACTCGCATTTCTGCTTTTCTTGGGAGCTTAGCGAAATTGGTGCTGTGAAACCTGATGGAGCAAGGCTTTTGAGAGAGGCC # Right flank : TATCGTCCAAGCAGGCCGCTCTTCTTTTGATCCTTCGCTTTCCGAGGCCTTAGTGAAAGCAGTAGAGGATATTAGAAGCAAGTTATAAAGGTTAATCAATAACAATGCCGTCTGAAAAAGTTTCAGACGGCATTTTTTCTATTTACATATTAAATTTAATATCATATTATCATTGTATCTGTATCAATTTGAATTTTTTAGAATTTCAATATGAAACCCCTAATTTACTACGTCCATTCCGTCCAATATGAACTCGGCAATCTCTTACCTTACGAACATTGGCAAACCTTATAAAGCGATTCGGTAAATGTTGGCGAAATGGTGGCGGAGTTTGCCCGAGTTTTTGGGGCACAGGAAATTACCTGTTAAACGGGACAGATTCATGACTTAGGGAAATATTCGGAAGCCTTTAATTATCGATTGCATGGCGATCCTTCAGGTGATCATGCTACCGCCGGAGCGAAAATTGCAAAAATGCTTGCTTTAGAGTGGAGGTCAAA # Questionable array : NO Score: 6.05 # Score Detail : 1:0, 2:3, 3:0, 4:0.79, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCAGCCGCCTTTAGGCGGCTGTGTGTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CCAGCCGCCTTTAGGCGGCTGTGTGTTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-5.90,-5.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-26] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [48.3-48.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //