Array 1 5214-6584 **** Predicted by CRISPRDetect 2.4 *** >NZ_QYWB01000013.1 Salmonella enterica subsp. enterica serovar Montevideo strain 11TTU1557b NODE_13_length_136856_cov_15.1594, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 5214 29 100.0 32 ............................. GAATGCCGGAGATTACCGGCTCCCCCCTGTCG 5275 29 100.0 33 ............................. ATTCGAGCCGATTTTGTCACGGGCCATGCCTGC 5337 29 100.0 32 ............................. TTGAAGACCGCGCTGATGCAATCCGCCAGGCG 5398 29 100.0 32 ............................. TCGGCATTGATCTTGTTCAGTTCAGCCGGTGA 5459 29 100.0 32 ............................. TGACCACAGGTTTTTCGTCTGCTGATGTCGGC 5520 29 100.0 32 ............................. GACAAGCTGGAACGTGATCGGCTTACTGATGA 5581 29 100.0 32 ............................. CGCCGTAAATTGTGGTACGTCGTGACTACAGA 5642 29 100.0 32 ............................. GCGACCTGCTCGACAGCATTCAGTTTGTTGTT 5703 29 100.0 32 ............................. GCAGCCGTGCGCAAGCGTGGCCTGACGATGAG 5764 29 100.0 32 ............................. TGCTGTTTGCAGACCACACAGGCGACAAATTC 5825 29 100.0 32 ............................. AGGGTGAACGAAGTCACTCTTAAATTTCTGAA 5886 29 100.0 32 ............................. TATGAATTTAATGTTTATCCTGGGCGCTATGA 5947 29 100.0 32 ............................. GTTAGGGAAGGTACTCCTGGCTAATTCTTTTG 6008 29 96.6 32 ............................A TTAGTATCAGTATAAATAACCACGTATTCACC 6069 29 100.0 32 ............................. TATGAGCCGATCTGGAACGTGAGCGCTGAAAC 6130 29 96.6 32 ....A........................ AGTTCGGCAGGTTTTAGTTCCGTCGCGTTTGC 6191 29 100.0 32 ............................. AAAATATAAAGTATGTTTTGTTTAATTCTAAA 6252 29 100.0 32 ............................. GCAAAACTCCCCAGATACCGCGCATCGGCACT 6313 29 100.0 32 ............................. ATAAATTATCGGGAAATCATAATCAGCGCCGC 6374 29 100.0 32 ............................. TCGAGTTCTGGCACGTCAGACTGACGTATCGC 6435 29 100.0 32 ............................. AAAACCCTCAAATATGCGTAACGGGAGGCTGG 6496 29 100.0 32 ............................. GGGATCGCGCTGGCGGTCGCATCCGTTGCCGT 6557 28 89.7 0 ............T..........-.G... | ========== ====== ====== ====== ============================= ================================= ================== 23 29 99.3 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GCACGAAGTGCGCTGTACGCCTAACACCTGGGTAACGGTTTCACCAAAAGTGAATATGCGCGGGGGATATGACGTGCTTTCCCAGGCGCTGGAGCGCGCCAATGAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGCTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCGCGTAACTGGCGTTTGTCGATGCAAACACATAAATATTTAAATATTGCCTGATGCATTACTAATTTTACGGACGGCCTGCCGATGCCGTCTGTGAGTCATCCATTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGATAAAAAGTAGTTTATAAACAATGATATACGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGATTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTCGGCGATGGGGAGCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCATGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGCAAAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 23347-25572 **** Predicted by CRISPRDetect 2.4 *** >NZ_QYWB01000013.1 Salmonella enterica subsp. enterica serovar Montevideo strain 11TTU1557b NODE_13_length_136856_cov_15.1594, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 23347 29 100.0 32 ............................. GCAGCATTATATCCTGTCAATACTGGGTTATT 23408 29 100.0 32 ............................. CCCTGGTTAATGATGGTTGTCAGCTTAGCCAG 23469 29 100.0 32 ............................. GTGGCAGCTGAGAACCCGGAGGTTATCCGGTG 23530 29 100.0 32 ............................. GTGCCGTGTTTGAAATTCCCAACGATACGTTG 23591 29 100.0 32 ............................. GCGCGGCTCGCATGTCAAAAATTGTCGATACT 23652 29 100.0 32 ............................. TGGCAAACGAAAGGCCATGTTGGCATAAGTAG 23713 29 100.0 32 ............................. ACGTATTACGTTTATGTCCGCACCAAAAATGC 23774 29 100.0 32 ............................. AGACATCAATTACTCAGGACGGGATGATGTTT 23835 29 100.0 32 ............................. TATGCTGAATTACAGGAAGGCAGGAAGTACGC 23896 29 96.6 32 ............................T TACCTGGTTGAATTCGGTCTGACTCCGGCCGC 23957 29 100.0 32 ............................. GCGCCCGCGGCGATTTAGCATAATCTGCAGTT 24018 29 100.0 32 ............................. GAGGGGGTTTCTTCATCGTCTGATGAAAACGG 24079 29 100.0 32 ............................. TCGGATGCATTGGGAGCGGGATTGCCGGAGCC 24140 29 100.0 32 ............................. GCTTCCCAACCTACCTGGAGCCAGGCGCGTTC 24201 29 100.0 32 ............................. CGGGCGCGGTCGAGAAACCATGCCTGCTGATA 24262 29 100.0 32 ............................. CCATATACAGTGGCGAAATTCCTTTTCCTCTT 24323 29 100.0 32 ............................. CGCAGGCAACGCTTCCCATTCCTCCTGCGACA 24384 29 100.0 32 ............................. CAACAGCCGGGAAAATGAAGGCTGAAGGGCAA 24445 29 100.0 32 ............................. AATCTAATTATGACGGCAAGGCGACTACTAAA 24506 29 100.0 32 ............................. AATAATCACATCACCATCACGCGCGACAACAT 24567 29 100.0 32 ............................. CGGTCTCCAGATAATAGCCGATTTATTTAAAA 24628 29 100.0 32 ............................. GCCCGCATTAAGCCGCTGACGCACTGGATCAA 24689 29 100.0 32 ............................. CGCTCGCAATCGAGGTTTGCGCCGAGTTGCGT 24750 29 100.0 32 ............................. GGCAATCATTAACAGCGCCGTTAATTCAGCGA 24811 29 100.0 32 ............................. GGAGACGAGAAAATCTTTAATAGTCTCAGCGT 24872 29 100.0 32 ............................. CCCGCAATCTGCGGGCGTTCTCGTCAATTTAC 24933 29 100.0 32 ............................. GATTGGCCCTTAGATAACGGGAGATCAAGCGC 24994 29 100.0 32 ............................. CATAACCTTCGCTACCACACTTGCCGGTACTT 25055 29 100.0 32 ............................. CCTTGAGGTTAGGGGAGTCAGGAAATTGCATT 25116 29 100.0 32 ............................. ACAAAATCGGCGGCCCAATCGCCGGCGCTGAC 25177 29 100.0 32 ............................. GCCTGCCGTCTTTTTATTGAGGTCTGTAAACC 25238 29 96.6 32 ............................T TAATCATTTTGTTTAAATCCCGGATCACCTCC 25299 29 100.0 32 ............................. GAGTTATTGTCACTCGTCAGTGATAATTTTCT 25360 29 100.0 32 ............................. CCCGTTGAAGATCTGGACGCATGGGGCAAAGC 25421 29 100.0 32 ............................. GTGAGCTCGGTTTTAATTTCGTCGCTAAGGTG 25482 29 100.0 32 ............................. CAAAAGGCCGACAGTGTGTACACCTCTAAAAA 25543 29 96.6 0 ............T................ | A [25570] ========== ====== ====== ====== ============================= ================================ ================== 37 29 99.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTTATTGAAGATGTTCTCGCGGCAGGGGAAATTCAACCGCCGTTACCTCCTGAAGATTCACAACCCATAGCGATCCCTCTTCCTGTTGCGTTGGGAGATTCCGGTCATCGGAGTACCTAACGATGAGTATGCTGGTTGTCGTTACCGAAAATGTTCCTCCTCGTCTGCGGGGGAGGCTGGCCGTCTGGTTACTGGAAATTCGAGCTGGTGTGTATGTTGGTGATGTTTCCGCAAAGATCCGCGAGATGATATGGCAACAGGTTTCCGTTCTGGCAGATGAGGGAAATGTTGTTATGGCGTGGGCGACAAATACAGAATCAGGTTTTGAGTTTCAGACTTTTGGTGAAAATCGACGTATTCCGGTAGATCTTGATGGACTGCGATTGGTGTCGTTTCTACCTGTTGAAAATCAATAATTTAGAGATCTTTAAAAATTAGGAAAAGTTGGTGGTTTTTTTGTGCGCTAAAAAAGTATTTAAATTCAATTGGGTAGATTTAGA # Right flank : GTTTCACCAGCTTATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATTCGCCCAGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGTGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //