Array 1 163732-161201 **** Predicted by CRISPRDetect 2.4 *** >NZ_MWNI01000044.1 Salmonella enterica subsp. enterica serovar Weltevreden strain CNGD2016001 scaffold4, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 163731 29 100.0 32 ............................. CGGTACGAAAATTTTTCATTTTTTATCCTCTG 163670 29 100.0 32 ............................. CCCCCTCCCCTACTCCGCGCCGGAAAAAAAAC 163609 29 100.0 32 ............................. TTCTTTTCGTGCGTCGCCCAGCGTTTGTGGCA 163548 29 100.0 32 ............................. GCGGCAAAAGCTGTCAGCGATTTTTTCAGTGA 163487 29 100.0 32 ............................. GAAGCGCCGCTGGGGCTGGTGGCGGCAGGGTT 163426 29 100.0 32 ............................. TCGTTTTTCTTATCGGTGTGGTTCGGTCGTAA 163365 29 96.6 32 A............................ CCCGCATTTCTCGGTGATCGACTTTGTAACCT 163304 29 100.0 32 ............................. GCGCAGCCCTCAAACCCACAACATACGACGAT 163243 29 100.0 32 ............................. CCAAAGAGCTGACATTGCTAGACCCTCATATT 163182 29 100.0 32 ............................. AAGGGCGGATCACTCTACGTCAGCACGTCATT 163121 29 100.0 32 ............................. AATGCGACAACTCGTCTACTGGTCACAAAAGG 163060 29 100.0 32 ............................. TGTTTTCCGCCGCGTCGCAACTCATGACAGCG 162999 29 100.0 32 ............................. TGGATGATTCCGTTTATCAGGAGTTCGCTGCG 162938 29 100.0 32 ............................. TTTAAGATACTGGTCGCCGCGACCGCTCATGG 162877 29 100.0 32 ............................. CCATATAGCCCCCTCTTATATGGCGTATGAAA 162816 29 100.0 32 ............................. GCGGGTGAAGTTACCTCCGAGGGCTTTCACGA 162755 29 100.0 32 ............................. CCGTGACAGACGGCGCTTTAACGCCCGGTGGT 162694 29 100.0 32 ............................. GCCCCGGTCATGAATTGCCAGCGCCGCCACCA 162633 29 100.0 32 ............................. CATTGGTATGCCGTCGAATTCAACACGCGTAG 162572 29 100.0 32 ............................. CGTTCGCGAGGAATACTGCCAGTACCGAATTT 162511 29 100.0 32 ............................. GTGTGGTGGCCAATGGCAATTAATAACAGAAA 162450 29 100.0 32 ............................. GCAGCGAGACCACGAAAGAGGGAATACCGACA 162389 29 100.0 32 ............................. GTGTGCGTGATGAGGTTCGCGGAGCATGTTCT 162328 29 100.0 32 ............................. AGCCCCTTTCTGATTTTTTCCGTAATGTCGGT 162267 29 100.0 32 ............................. CCATGTTTGATTGTGCGGATTGACCAAAAGCC 162206 29 100.0 32 ............................. TGGATAAAACGGTGTTCATATTTATTGGTGCG 162145 29 100.0 32 ............................. CGGCCTTTGCCCCCAGGAAACGATGATGACCA 162084 29 100.0 32 ............................. GGCAGATTTACGACAACAACCCGGCAGCGGTG 162023 29 100.0 32 ............................. CGAATTACTACCGGGCTAACACAAGTGGTAAG 161962 29 100.0 32 ............................. GAATTGTTGCTACGACTAAACAGGGAGGGAGC 161901 29 100.0 32 ............................. AAATTAGATGATCTGGACAACTGCCCGCAATG 161840 29 100.0 32 ............................. ACTCAGGCGGAGAACTGGCCGCATTAACTGTT 161779 29 100.0 32 ............................. CTGGGTGTCCAGCGGACATCCTCAGCCGGCGG 161718 29 100.0 32 ............................. AGATAGCGTGAGGCAATTCTTAGCGTTGAACT 161657 29 100.0 32 ............................. GGAGGTTGCACCTGAGCGCCCCTTCACTGGAC 161596 29 100.0 32 ............................. CCAGCAGCTTGCGGAAAAGATTCGCACTGCCT 161535 29 100.0 32 ............................. TGGATAAAACGGTGTTCATATTTATTGGTGCG 161474 29 100.0 32 ............................. CGGCCTTTGCCCCCAGGAAACGATGATGACCA 161413 29 100.0 32 ............................. GCTAAAACGGCGCTTGAGAACAGTATCAATAT 161352 29 96.6 32 ..........T.................. GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 161291 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGGCAAGGGCTGAAAA 161230 29 93.1 0 A...........T................ | A [161203] ========== ====== ====== ====== ============================= ================================ ================== 42 29 99.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGTCTGCGGGGACGTCTTGCCGTCTGGTTACTTGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTTAGATTAGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTAGGTAATAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCTTATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATTCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCGTCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 182587-180239 **** Predicted by CRISPRDetect 2.4 *** >NZ_MWNI01000044.1 Salmonella enterica subsp. enterica serovar Weltevreden strain CNGD2016001 scaffold4, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 182586 29 100.0 32 ............................. GTTCGCCCGGTATCCTCGCCAGTCCGCGACCT 182525 29 100.0 32 ............................. GGCGCCCATGAGGTATCCCGACAGGAGCACGA 182464 29 100.0 32 ............................. CCAGCGTCATGCTCTGCTCGTTGTTCCGGCGT 182403 29 100.0 32 ............................. CAGGAGACGACATAATACGTGGTGACTTTTGG 182342 29 100.0 32 ............................. GTCAGGGCGTTGATCGTCCAGTCCCGGTCCTC 182281 29 100.0 32 ............................. ATTAAATAATCATTTACCATATTGCAGGTACA 182220 29 100.0 32 ............................. ACCGGGGCCACGACTTACGTCAGCGCGCCGAT 182159 29 100.0 32 ............................. GCGGCTGCTATTCCGGGGTGGGAGGCCGGCGC 182098 29 100.0 32 ............................. ACCTGACATATTCTGCGGGCGGCAGTAAATAC 182037 29 100.0 32 ............................. GCGTTTTCCAGGCGTTGCGTTACGAGCGCGAT 181976 29 100.0 32 ............................. AAAAAATCCTTCCTTGTGGCTGTGCTGCTGGC 181915 29 100.0 32 ............................. GCAACTGGAACAACGATAGCGGGCAACTGGTT 181854 29 100.0 32 ............................. AGTTATGTTGAGTTCCGGGATTTCAATATCAG 181793 29 100.0 32 ............................. ATTATATAAAAGGCGGCGGCAATGACGGAGGT 181732 29 100.0 32 ............................. ACCACAACATCATTCAAACCGTATAACTACTG 181671 29 100.0 32 ............................. ACGCGATGTCGGTACATGATATGACCACAACA 181610 29 100.0 32 ............................. AAAAAAGGAACACACATGGCCTTAGAAGATGA 181549 29 100.0 32 ............................. ACGCGATGTCGGTACATGATATGACCACAACA 181488 29 100.0 32 ............................. AAAAAAGGAACACACATGGCCTTAGAAGATGA 181427 29 100.0 32 ............................. ACGCGATGTCGGTACATGATATGACCACAACA 181366 29 100.0 32 ............................. AAAAAAGGAACACACATGGCCTTAGAAGATGA 181305 29 100.0 32 ............................. ACGCGATGTCGGTACATGATATGACCACAACA 181244 29 100.0 32 ............................. CTGAGTAGCGATCGCCCCAATCCAAATTTGAT 181183 29 100.0 32 ............................. CCGGAGAAATTCAGGGTCATGGATGAAGCCGG 181122 29 100.0 32 ............................. ATCTTAACCAGCAGGCTGGGTTTGGCGGGATC 181061 29 100.0 33 ............................. GCTTTAGCCACGTTCCCACGCGCAAACACCAGC 180999 29 100.0 32 ............................. GTGATCGCGAGTGCTGAGGCTGAGGTTGAAAT 180938 29 100.0 32 ............................. GTGAGGTTTTTTTTGAGGAGTCCGCCCAATGA 180877 29 100.0 32 ............................. AGGCTCAATTGCGTGAGGCTTGGGAACGCGTC 180816 29 100.0 32 ............................. CGACGCGCTGGGGCGACTGGTTTTCACCGAGC 180755 29 96.6 33 ...........................T. GGTTAACACTGACCCGGCTGCGGTCGTCGCAGC 180693 29 100.0 32 ............................. ACCGCGTGCGCATGGACATTGCCCGCTGGGAT 180632 29 100.0 32 ............................. GTAAAAAGCCGGTTATGCGCAATAATCAATTC 180571 29 100.0 32 ............................. CTACTTGGCGTGATGCGCTGCCGAAAATTTTG 180510 29 100.0 32 ............................. CGCGTGAAAAATTGCGTTACCGCCTGGGTGAG 180449 29 100.0 32 ............................. CGCCTGGCAAATTTCACCGTTAACACGCTGAG 180388 29 100.0 32 ............................. CCGGTACGCGAGGGGATTAACCTCCGGGCCGA 180327 29 100.0 32 ............................. TCTCCAGACTCACCGATATAACCCCCTGGCAC 180266 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================= ================== 39 29 99.5 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTACAGCCTATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACCCATCCATTACCTTGCATTGTTTATTTTCTCTATGCGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTGGTGCTGATAAAAAATAGTTTATAAACAATGATATACGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTTGAGGATGAGTCTACGTCGATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTCGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCATGGCTTCCTGACAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGGAAAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCTCTGCCGATTGGC # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //