Array 1 14201-17187 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGFEK010000024.1 Acinetobacter baumannii strain 16019 scaffold24.1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================================= ================== 14201 29 96.6 30 ............................T TTAGGTGTCACAGTGCCAAAAACATTACAG 14261 29 96.6 29 ............................T GAAACAGATTCGGGAGCCGAAGCTCCCGA 14321 29 96.6 30 ............................T CTAGGGCTTTAAATAACTGAGCGTTTGCTT 14381 29 100.0 30 ............................. CGTTTGTTGAATGCAGACGTTTTAGACATG 14441 29 96.6 30 ............................G CCTGTTTGCTGTATTAGTTCTTCACGGACC 14501 29 96.6 30 ............................T CCAAGCAATTATTCGCTATTTCGACAATCA 14561 29 96.6 30 ............................T CAATTGGAACGATATCAGGCTAATAACTAC 14621 29 100.0 30 ............................. AGTAAACGTAATGAGCAGTTACAAGCTGCT 14681 29 100.0 30 ............................. ACAACGGGTGAACCTGTTACGCCAAAACCC 14741 29 96.6 28 ............................C TGATGCTCAGGATCCAAATGCACCTGAT 14801 29 96.6 29 ............................T TATGATGCTGTAGCGTCTCAAATCATGTC 14861 29 100.0 29 ............................. GTTACCACAAGTGATAACACAGCAAGACC 14921 29 100.0 30 ............................. ATTCGGATCTGATTAACTGGACTGTCGGTC 14981 29 100.0 31 ............................. TTCACCAGCCTCGGCTAGACTTGATGCTCCT 15041 29 96.6 30 ............................T TTAACCGAGATCAAGAAGTAATTGCTTGGG 15101 29 96.6 30 ............................T ACAATACGACGTGATAATGCAACTAAAGCC 15161 29 100.0 30 ............................. CGGTAAAATTAAGTTACCTGCTAAACTTGT 15221 29 100.0 30 ............................. ATCAAAGCCTTAATCGCTAAATCAACTGCT 15281 29 96.6 30 ............................T TTTGTTTATACGGTTAATAAATCAGTACAA 15341 29 100.0 31 ............................. TTACACAGGCATGGCAATGAAAGTGTTCTTT 15401 29 96.6 30 ............................C CTCGTGGAAAAACTTAAAAGCCATCTTCGT 15461 29 96.6 30 ............................T TCATCTAAATGTTTTTGACGTTCAGCTTCA 15521 29 96.6 30 ............................T AGACAGCTCATTTAATCCGGGTGAGAAACA 15581 29 100.0 29 ............................. GTTCAGCATTCCCCTTCGGGGTCAACGTC 15641 29 100.0 31 ............................. TTACCCCTCCTTACTTTCTGCTTTAACTTCT 15701 29 100.0 30 ............................. AAACACCAAGCCATAAAATTAATTACAGCA 15761 29 96.6 29 ............................T GTTTTGCTAATTTATCAATATCGATTTTC 15821 29 93.1 30 ...AC........................ CAGGGGTCAAGTTCAGAAGATTTACGTTAC 15881 29 82.8 30 ...GC.......CC..............G GTATTAGTGCGAATTGGCTTTTAGCCCACG 15941 29 89.7 30 ....C.......G...............T AAATGCTCAACTATTTCTGTAGCTAATGGA 16001 28 82.8 30 ...GC....T...-..............T TCAAATGATTTAATGAGCTTGTAGCCATTT 16060 29 89.7 30 ...GC.......T................ CGTCTTCTAATGATGGACTTTAATCCAATA 16120 29 82.8 31 A..GA.......TC............... TCTCACTGAAGATATGACCATCACTTTCTTC 16180 29 82.8 30 ..CGC.......CC............... AGCCATTTACTTTGATAAAGCGTCACATAG 16240 29 96.6 30 ............................T AGGAAATTCTATCGGCCCAGCATCTACAAA 16300 29 100.0 30 ............................. AGAGACACATCGTTAATAATCTCTTGTGCG 16360 29 100.0 31 ............................. TGAGCAAATTATCAATTGATCTATCTGCAAG 16420 29 89.7 30 ............CC..............T AGACGGTGTTACCTGTAGGCGGTGTCTACT 16480 29 89.7 31 ...TC.......C................ TCGTTTGAATAATATGGACAATCCAGCCAAT 16540 29 86.2 30 ....G.......TC..............G CAGCATCAAACGAGATATTGGCTAACATAT 16600 29 79.3 30 ...G......A.CC...........C..C AAATAGTTTTAGCTATCTGAGCATTTAATT 16660 29 89.7 30 ....G.......C...............T TCATCACGTAGCCTTTTACACGCATCTTGC 16720 29 93.1 49 ....................C.......T GTACGCTGAGTATTGATATTGACATTCAGGGCATTCAGAATTTGGCGCT 16799 29 93.1 29 ....G........C............... CCAGTTTGCTGAAAATCACCAATACGGTC 16859 29 79.3 30 ...TC......TCC..............G ATTCTATGAGCGTGACCATGACTCTATTTA 16919 29 89.7 30 ...GC.......C................ TTATCCAGATAAAACCATATCTACAAAGTG 16979 29 93.1 30 ....G.......................G ATCATCTACAGTGATTGAATAAACGGTTTT 17039 29 82.8 30 ...GC......TG...............C AACGACGACGCCGTGTGTTTGTTATCGGAA 17099 29 79.3 31 ...GC....T..TC..............C AAGTAGGATTTGCAGCCCCAATAGTCTTTAT 17159 29 75.9 0 ....G....T...C.A........AT..T | ========== ====== ====== ====== ============================= ================================================= ================== 50 29 93.4 30 GTTCTTCATCGCATAGATGATTTAGAAAA # Left flank : ACGTTGGGCTAAAACGTTATACAAACAACTTGCTAAAGGCTTTGGAGTTGAATTTATTCGTGATGAAGGAAAAAACTCTCAAGACTCTATTGCGGATATAGCCAACAGCTACCTTGATCATGGAAACTATATTGCCTATGGCTATGCAGCAGTTGCTTTAAATGGAATGGGAATTAGTTTTGCCCTCCCTATTTTGCACGGTAAAACACGTCGTGGAGGTCTAGTCTTTGACCTAGCGGACCTAGTTAAAGATGCTTTTGTTATGCCAGTCGCTTTTACATGTGCAGCAAAAGGATTAAATCAAAAAGAATTCCGAATGCAGCTTATTGAAACATGCCAAGACCAAGATATTTTAGATTACATGTTTAGCTTCATTACTGACATATGTAGTAAAATCAAATAAAATCATACATTTAACCCAAATACCTTATAACGAAGTATTTTCACTCATTAAAAACTTATATAATTGATTTTAAGAGTTTTGTTTTAACTTAACTCTA # Right flank : TTTGAATCTTAAAAAGAAAAAACCCCGAAACTTACGTTTCAGGGCTTTTTCGAATCTTGGTGGAGATGGCGGGAGTTGAACCCGCGTCCGCCAGCACTACGCTCGAGAATACTACATGCTTAGATATCGTCTATTGTTTTAACACCAAGTGACCCGACGAACAGGGTACAAGGTGCGATCCTCTAAGTTTGGTATAAAGCCCCGAGGCTTGACTCTATACGGACTTGTGTGCGTGCGCTTCAGTCGGGTTCCCAGACCACAAGTATTCTAGGAAGCGGACAAGCGGCCCTTAGGCAGCTAGAGCGTAAGTTTCGTCGTTTGCGACTATTTAAATGCAAATTTTATTTACGAGAGAAAATGCGCTCTCGGCATGCATCTATGAGTTTCATCACCGGCGTCGAAGCCAATAACATCCCCATGAATGTCTGCACATCATAGCATAACTAAAATAAAATGCTGTGCATTTTATCAACAGTCTGCCACTGATGAACATACTTACA # Questionable array : NO Score: 5.29 # Score Detail : 1:0, 2:3, 3:0, 4:0.67, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.36, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCTTCATCGCATAGATGATTTAGAAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.86%AT] # Reference repeat match prediction: F [matched GTTCTTCATCGCATAGATGATTTAGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-4.70,-3.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-52] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [81.7-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //