Array 1 129007-126147 **** Predicted by CRISPRDetect 2.4 *** >NZ_LAXX01000003.1 Legionella pneumophila strain ATCC 33823 Scaffold3_1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ =========================================== ================== 129006 32 100.0 33 ................................ CAGTAAGGACAAGACACAATATCACTTAAGTAA 128941 32 100.0 36 ................................ AGGGGCGCTTTTTCTTTTGCCGACGGCTCTATAGTA 128873 32 100.0 35 ................................ AAAGCACGTGCAACAGTACCATAAACAGTTTCATC 128806 32 100.0 35 ................................ AAAACGAGTACGAATAGCATCAACAGCAGAAGAAA 128739 32 100.0 34 ................................ TGAATTTGAAACGCCTCTCGCAACTGATTAATAG 128673 32 100.0 33 ................................ TAATAAATTAGATTATATAGCTAGAGCTTTAGG 128608 32 100.0 35 ................................ CGTCTTGATGGAGCTTACGGCGGTTGGAAACTTGT 128541 32 100.0 35 ................................ TATGATTTCATCAATTGTTAGCATTTTCTAACTCC 128474 32 100.0 35 ................................ AGAAAACTTGTCTATTAGTGGTAGTGCTGCTGGAC 128407 32 100.0 34 ................................ ATGTTTCACCTCATAGCCTAAAAAGTTTAATTCA 128341 32 100.0 36 ................................ ACAGATTACCCAGCATTTAATGGCTTTCTTAAATCG 128273 32 100.0 35 ................................ TTATAGGTAATAAAACACCTGATGGTGCAATTATA 128206 32 100.0 36 ................................ CTCAGTGACTGTGTCACCGGCGTAACGCTCTAAGAT 128138 32 100.0 36 ................................ CTGATGTTTATGCTGATTTGTCAAATGCTACTGCTG 128070 32 100.0 35 ................................ AGATAACTTAGATTTTAAGCGTCTATATTTAACTG 128003 32 100.0 34 ................................ CGCTGCCGGGAGCTTAGTCTTAGATGTCGGAGAA 127937 32 100.0 38 ................................ CCCCCTCTGTCCTGCATACTTTGATATTTTTACCCATC 127867 32 100.0 35 ................................ AGCTAATGACCTAGTTAATGTATCTATTATTTTCT 127800 32 100.0 34 ................................ ACACCATACTCTCCACAATGATAATAACGAATAC 127734 32 100.0 35 ................................ ATGTTGAATTGGCCAGCGATAACGTAACAATTACA 127667 32 100.0 36 ................................ AAGTATTTCTGTTTTACTAGGTTTCGGTATAGTTTC 127599 32 100.0 36 ................................ AAAATGAGGCTTTGGCTGGTGTAGCTGTAATAGGTG 127531 32 100.0 43 ................................ ACAAATATAATAAATTAGCCTGGGAATGGCGAGTTTGGGACAC 127456 32 100.0 34 ................................ GGTTTTCCAGCCGCATGGTTTTCTCTGGCCAGTC 127390 32 100.0 35 ................................ ACGTTCAGTAATAAACTTGGCTCTTTCCGTCGGGG 127323 32 100.0 42 ................................ TGCATTTATTACTGAGGCGGGGAAAAGATAATGGCAAATCAC 127249 32 100.0 35 ................................ GGAAGGACAAATAAATGAGCCTAATGAATACATTG 127182 32 100.0 35 ................................ ACAAGTAAAGTTTAAAGATGAGCTTGTCTATATTT 127115 32 100.0 35 ................................ TGCTGTGTATAGGCGAGAACCTACACTCATAATTG 127048 32 100.0 35 ................................ ATAATATAACGAGCAACATAAGCAGCAGAATTAAA 126981 32 100.0 34 ................................ AAATTAAAAGTATCACCAGGTAAAGCTTCATCAA 126915 32 100.0 34 ................................ TCCTGAATAAACGATGAATTAAGAACAGGCAAAG 126849 32 100.0 35 ................................ CTGAATCGTTGGCTGAAGATCATATATTAAGTTGG 126782 32 100.0 34 ................................ CAACTAAGACAAATGATAAAGGCGAAACAAGAGT 126716 32 100.0 36 ................................ CAATATATCACTGGGCAATAAATACTCAATTTTATG 126648 32 100.0 35 ................................ TTAAAATCTCTACGCAATATATTGCCCTGCGTATC 126581 32 100.0 37 ................................ AGATTATAAAAACATTAAAATAATAAATGGCACTATT 126512 32 100.0 35 ................................ TATTTATGTTGTTTGTGATGATTTACAGGTGGGTG 126445 32 100.0 34 ................................ ATTCCATTGTTCGGGTGTTATCGGGTCTGCATTA 126379 32 100.0 35 ................................ ATGTGCGAATAAAGAAAATAGTAAATGCCATATGT 126312 32 100.0 35 ................................ ATGCCTGTTGTTAAGACAAAATGGAAAGTTGTAGA 126245 32 100.0 35 ................................ AGGAATAGCAATTGTGTCAAATAGAAAAGTAGACG 126178 32 90.6 0 ...................T.C........T. | ========== ====== ====== ====== ================================ =========================================== ================== 43 32 99.8 35 GTCGCGCCCCGTGCGGGCGCGTGGATTGAAAC # Left flank : AATTTTATACTCCTTATTTAGTGAAGTAATTATGTTTGTAGTAATAACTTATGATGTTAATGTAACAACTTCTGGTGGGCAGAAACGTTTACGGAATATTGCAAAAACATGTCTTGATTATGGTTTTAGAGTGCAAAACTCTGTATTTGAATGCGAAGTTGAACCTGATCGGTTCGTTGCGTTAAAAAATACACTTTTAGAGTTATTTGATCCTGATGCTGATAGCTTACGATTTTATTTTTTAGGCAAAAAAGGGAAGGATAAAATCGAACATTTTGGAGCTAATAAGGTCATCGACCCCTTGAGAGATCCACTGATACTGTAATTCGCTAACTTGAAGTTCTCATATTTTTACCGGTCAATTATCGGATTATAACCACTTGATATTTATATTTTTTTTTATGTGTGCTTATCAAGCTAATCAATAAATATAATTTTTTATTATTATTAGCGATATTTAGCATTTTTTTCGATATATTTCAATATGCTATAATCATACT # Right flank : ACGGGTAGCATGAGTTTTTTAAGTGAACAAAAGCGTCGCGTTTAGCAAAGATAGTATGAATAAATTTTAATTAAAATGAACTTGATGTGAATTGTTACAAACATTTCATATCGATTTTAGGTATATTTAGCCAGAAGCTCTTTGTCTTTATCTTTGACTTTGATATCTTAAAGAAGAAGTTCCAGATTTTTTACAAGGATGTGAATATGTCTGACTTACAACAATTGCCTAAGACTATCCTGAGATTTTCCTGGCATTTTATAAAAAAAAGTCCCTGGCTTTATGCTTTATTTTTCATAGCACCAGTGGTGATGGTGCTTGAAACGAATGTGATTCCCTATGCTTTAAAAATGATTATTGATGGGATAACAAACCATAAAGGGGGAAAAGAAAGCATATTTCAAGACATCGCACCGGCTTTGTATTTGGGTGGAGTTGCCTGGTTTGGTGTGATTCTGGTGTTGCGCTTGCATAATTGGTGGCAAGCCTACCTTGTTCCT # Questionable array : NO Score: 9.25 # Score Detail : 1:0, 2:3, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCGCCCCGTGCGGGCGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCGCCCCGTGCGGGCGCGTGGGTTGAAAC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-7.80,-6.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [61.7-80.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.74,9.68 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //