Array 1 13092-12674 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP029353.1 Azospirillum thermophilum strain CFH 70021 chromosome 2, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ========================================= ================== 13091 37 100.0 37 ..................................... TCTTGGACGTGCGCCAAGACCCACCTGCCCATCATGG 13017 37 100.0 39 ..................................... GTTGAAGCCGAGTTCGCGGGTCAAGGTCTCATCGATCTG 12941 37 100.0 41 ..................................... GCGAGGGCGGCCGTGTTCGGCTTGCCGGTCAGGTACTCGGT 12863 37 100.0 41 ..................................... CTCGTGACGAAGCAGGCCAGCGGCTACGCGAAGATCGACCC 12785 37 100.0 38 ..................................... ATCATTTGGGCTTGCTGTGATCTGGTAAGGTGGTTCTG 12710 37 97.3 0 ..................................C.. | ========== ====== ====== ====== ===================================== ========================================= ================== 6 37 99.5 39 GTCATCCTGAGCAGAAATGCTCAGGCCTCATTGAAGC # Left flank : TGCTGCTGCGCCAGATCTGCGCCTATTTCGGCATCATCTGGGACGAGGCGGAGGAGCTGGAGCGTCTGGCCGACCTGTCGCACCCGCGGGTGACGGTGGACACCTCCGGCCTGACGCCCCGGGCGACCGAGCTGGCCAACCGTCTGGCCGAGCGCATCCACGACCTCGACGAGCCGGCGCTGGACCGCATGCTGGCGATCCTCGACGAGGCCCCCGTCCGTCGGAAGCCCGCCCGCCGCCGCCCGCCGCGCGGCTGAGCCGGGGGGTGGACCGGTGGAAAATCCGTGATAGGATGCAACTGCCGCCTCCCGGCTGCGAGCGGTCCGGCACCCGGAAAATCCCGGGACCCGCTCGCAGTGGCGGGGCCTTTGATTTTCCAGGGATCTTTGACATCGTTGAGAACGAAAAGCGACCAGATTTCCTGACCAACCGGTCAGACTCCGGGACCGCTCGAATCCGCGGCGTTTTTCCCAAGCGCCGCAAGGGGTTGCGAGTAACCC # Right flank : GCTGCGCGAAGCCCGCGGCGTGCCACGCCCGGTACACGTGGTGACCCGCGCAAGTCGATGGCCCGCCGCTCATCCCCGTTGGCGGGTGCGGACGAAGCCCTGCTCGGTCAGTTCGACCGCGCCGAGGTCTAGCCCCATGGAGCGCGCGCCCTCGGCGACGGCGGCGCCCACCGCGCGCAGCCGCGCGGCGTCTCCCCTGGCCTGGGTGACGGCGGCGTCGATCAGCGCGGCCTGGACCAGCAGCGACTCCGCCAGCTCCTGCTTGGTCGCATCGGCGGCGCGCAGCAGTCCCGGCGTCGCGGCCAGCGCCTGCGCCGCCTGCGCCCGCACCGCCGCATTGGTCGCGCGCGAGGTCTCGGCGTTGGTGCCGCGCGTCGCCTGCCAGGCGTTGATCCAATAGACTGTATAGGCGTCGGCGAGATCGTCGATGCGCAGGCCGTAGGGGGCGAGCGCCGTCCCGATCCGCTCGATGACGTCGCCCTCGGCGAACATCCGCTCCA # Questionable array : NO Score: 3.23 # Score Detail : 1:0, 2:0, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCATCCTGAGCAGAAATGCTCAGGCCTCATTGAAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [8,10] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-13.30,-13.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [26.7-33.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.15 Confidence: HIGH] # Array family : NA // Array 2 1888305-1888937 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP029353.1 Azospirillum thermophilum strain CFH 70021 chromosome 2, complete sequence Array_Orientation: Unconfirmed Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================== ================== 1888305 37 100.0 35 ..................................... ATGCGCACGCGCATGTATATGCATGTCCCTGGAAA 1888377 37 100.0 38 ..................................... AGGCGAGACAGAACCTCTATCGCGGTGGGCTGCGCGGC 1888452 37 100.0 35 ..................................... ATCCAGGCCTGCGACATACCCGTCTTGCGGGCCAC 1888524 37 100.0 38 ..................................... GCCGTTGATGTCCTCCTCGTAGGCAGTGCGCCCCTCAT 1888599 37 100.0 40 ..................................... AACGTGCCCTCCCCGACATTCACGTCGAGGTCGCCGACCT 1888676 37 100.0 35 ..................................... GACAGGTTTACCATTGTGCTCCTCCTGCCGCCCCT 1888748 37 100.0 40 ..................................... CTCCCATACGGCGCGTGAGCTATCGGAGAAGATGACGACG 1888825 37 100.0 39 ..................................... TGGGTGATGTCGGATAGTTCTGCGGCGGCTTTGATGCGC 1888901 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ======================================== ================== 9 37 100.0 38 CTCTTCCTGGGCAGTAATGCCCAGGCCTCATTGAAGC # Left flank : AGCAGCAGACCTCGCTGCTCGGCGTGCTGTGGGAGGCGGAGCTGGGCCAGCCGGCCATCCTCGCCTTCCTGGAGCAGAACTGGATGGAGCATTGGGAGCGGCCGAGCACCGCCGCCTTCTTCCTCCGCCACGTCACCGAGCTGTTCGGGCGCGGCCTGATCGACGCCGACGGCCGTCCGGCCACCGCCCGCCCCTGGGCCGACGCCCGCCGCGCGGCCTGAGCCGGGACCGGCGCCGCGCCCGGTCGCCGCGAACATCCCCCTGTCCCATCCCGCGCCGCGTGTGCTAGCATGCCGCCGGCTGCCGCTGCCGTGCGAGCGGTCCGGTACGCGAAAAACCCCCGGACCCGCTCGCAGCGGCCGGAGCTTTGATTTTACGGGGTTCTTGGACATCGTTGAGAACGAAAGGGAACCGGATTTCCTGACCATCCGGTCAAGATCCCGGACCGCTCGAATCCGCCGCCGATTCGCGCGTCTTTTCAGCATGGTACAGGGTACCCT # Right flank : CTGACCGTACTCACCGTGGGACTCCAGGTACGCATTCTGTCTTCACGGGCAGTACTGACGCCGCCCCTGGAGCCCCCCTTGAAGCTCCCCTTGAAGCTCCCCCTGAAGCTTCCCGGCGGCGGCGGCGGAGCGGCCGTCCAACGTGGTTCCCCCTCTCCCTCTCCTTCGCCGGGGTTGGGCGGCCGATTGACCGTGCCGCCGCTTGGGGCCAGAAAGGAGGCCTGCCGCCGGGCGCCCCGCCCCATCCCGTCGCGCGTCAACCGAGGACTCCCATGTCGCCTTGTCCCTGCGGCTCCGGCCGCTCCTTCGCAGAATGCTGCGGTCCCATCCTGGCCGGGGAGCCGGCACCGACCGCCGAGGCCCTGATGCGGTCGCGCTACACCGCCTTCGTCCGCGGCGACCTCGACCATGTCGAGCGCACCCATGCGCCGGAGATCCGCGACGACTTCAACCGCGGCGAGGCCGAGCGCGCGGCGGCGGAGTCGGAGTGGCAGCGGCTC # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTCTTCCTGGGCAGTAATGCCCAGGCCTCATTGAAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [7,9] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-15.70,-15.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [36.7-41.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: NA [0.37,0.37 Confidence: NA] # Array family : NA // Array 1 753592-754781 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP029352.1 Azospirillum thermophilum strain CFH 70021 chromosome 1, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 753592 29 100.0 32 ............................. AAGCTGACCGGGGGGATGGGTAAGGCCGACGC 753653 29 100.0 32 ............................. GAGGCAACGGGGGTACGTTATTGGGGAGAGGC 753714 29 100.0 32 ............................. ACCCCGCGGCGGGCCCGGATGGCGGCCGGTGT 753775 29 100.0 32 ............................. GCCGCGCCTCAGAGCAAGCCGCAGTCTTTCAC 753836 29 100.0 32 ............................. CTCCCAGCCGTTCAGAAAGTAGTCGACCAGCA 753897 29 100.0 32 ............................. ATGGGGCAGGCGATCGGTTGGCGGCCGGCCGC 753958 29 100.0 32 ............................. GATACGGTCAGCTTCTCCCCGAGACAAAAGCG 754019 29 100.0 32 ............................. GGCATCAAGATCAACGCGAGCCGGCAGGACGC 754080 29 96.6 32 ............................G TCAATGTCCGTCAGTACGCTGAGCGCGCTCGC 754141 29 100.0 32 ............................. GCCACCGCGCCCGGCTCCGGCAGGCTGAGGCC 754202 29 100.0 32 ............................. CTGACGCTGCAGGGCCAGGACGAGCATGGGGC 754263 29 100.0 32 ............................. TGCGCAGACATGCAGTCGACGTACTTGTTCCC 754324 29 100.0 32 ............................. TGGTTGCGGAGCGGCCGATCTTCTTCCGCCTC 754385 29 100.0 32 ............................. AATCGGGTGGCTGCTGCGCGGGAGAGCCGGTG 754446 29 100.0 32 ............................. TCGCAGGCGTCGCAGAAATCAGCCAGTTCCGC 754507 29 100.0 32 ............................. ATGACCCCCTTCACGCCGGTCACGTCGGAGAC 754568 29 100.0 32 ............................. TCGGCAGGTAGATGCCGCGGGTCGGATTGACG 754629 29 100.0 32 ............................. CTCGCATCCGAGGCGCTGAATGTCGGCCATGA 754690 29 100.0 32 ............................. TCCGCCAGGGCGGCCAGCACGTGCAGCACCAG 754751 29 82.8 0 ..T.......T..C.......G...G... | CG [754760] ========== ====== ====== ====== ============================= ================================ ================== 20 29 99.0 32 GGATCCCCCGCATGTGCGGGGATAGACCC # Left flank : TGCGAAAGGCCGACAGGGCGTGATTAGCAAATGCACCGAGCGCTGGAACAGCGGTTTGCTGTTCATGCTGCCGTACAGGTCGTTCACTTTCCTCCGGTCGTCCCGTTCAGTTTCGAGCGCACTGTGCAGCCTATCCAAGAACCTGCGCACAAGCAGCACAGCACGAACCCGCTGGAACGTCTGAACAGCGAGATCGAGCGGAGGACCAAAGCCGCCGGCATCTCCCCCGGGGAAGGGGCGGTCAGCCGCCTCGTCGGTGCATTGCTGCTCGAACCGCACGACGAGTGGGCGGCGTGCCGGCGGTACATGATCATGGAAAGCCTGAATTAGCTGTGCCACCCTCAAGCCGCTGATCCGTTGCCCATTGCAGCGGAGTAGGCCGGCGGCTTCAATTCGCCGAAGAGCACATAGGCCTCCTCAGACAACACGCTCCGGGGGCACACTCCAAAACGGTCTGGTTCTTTGACAAAGTGAATGAAATCAGCGTGGTACGAGGCAGG # Right flank : CTTGGGCTTTGCCCCGCCGATCCGGCCGGCGGCGGTTTCCCGCCTGTGCGGGGAAAGCTCTTCGGCATCACCCCTAATTCGGCACCGCTATCTTCGCCCAAAGCGGGACACTGTTGGCTCAACGATCCGCTACTCATCACAAGTAGCGCCGCCAGCACGAGCGTTTCGCTGTTAGGGATTGCCACCATGGAGGCTAACGATCCATAATTTGAAACGATCTCCGTTTGTTCGCGCAAAAAGAATCGCCTTATGGCTGTTGATGTCCGATCCCCCTGGGGAAAGTTTGACGGTCAGTCGGGTGACAGCCATCACCTCGCGCATCATTGCGCCGATGTTGCCGCCTGCTTCGAAGCTATCGCCGGGCTCCCCGTGGTCCGCTCACGGATGGCCGCAGCCGGGGGCGTTCCGTTGTCGCCGCGTGGTCATGCGCGCCTGACGGCTATTGCGTTTCTTCATGACGTGGGAAAGCTGCATCCAGGTTTCCAAGCCAAGGGTTGGCT # Questionable array : NO Score: 3.21 # Score Detail : 1:0, 2:0, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GGATCCCCCGCATGTGCGGGGATAGACCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [51.7-26.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.42,0 Confidence: HIGH] # Array family : NA // Array 2 764004-765005 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP029352.1 Azospirillum thermophilum strain CFH 70021 chromosome 1, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 764004 29 100.0 32 ............................. GAGGTGAAGCGATGACGATGACAGCCGTCGAT 764065 28 96.6 32 ....-........................ TGACGCCGCCCACGCAGGGCAGGCAGCCTGAC 764125 29 100.0 32 ............................. GCCGCCGCCATTGTCTGCAAAGCCGATGCAGA 764186 29 100.0 32 ............................. CCGATCGTGCGCACGATCAGCGATCCGGACGC 764247 29 100.0 32 ............................. ATCGTTGATGGGGTGCGGCTGGACCATCGGTC 764308 29 100.0 32 ............................. AGCCGGATGGTTGGGAACACCGCCAAGGACTT 764369 29 100.0 32 ............................. CGCACCATGAGCGTGCCGTGCGGGTAGGGTGC 764430 29 100.0 32 ............................. TTTACCGTCGGTTTCTGGCGCGAGTCGGTCCC 764491 29 100.0 32 ............................. CTTCTATGGCATCTACGACGCGCCGGATCGGG 764552 29 100.0 32 ............................. AGCCGCGCGCTGGTGGAGCACTGGCTCCAACG 764613 29 100.0 32 ............................. TGGATGGCCGTCGCTCCAGTATCCGTCACGGA 764674 29 100.0 32 ............................. GACCAGCACGTCTCGGTGCTCGGCATCTACGA 764735 29 100.0 32 ............................. CCGCGCGCCGTCATCGGCGGGAACATGCCGCC 764796 29 100.0 32 ............................. AAGACAACCTTCCCGAGTCCGTTGGTTGACTG 764857 29 100.0 32 ............................. CGCAAGAGCACGCCCGAGGAGCTGGCGGCCCT 764918 28 96.6 32 ....-........................ TCCGGGGCGTTTGTCCGCACCGGTACGGGGAA 764978 28 96.6 0 .................-........... | ========== ====== ====== ====== ============================= ================================ ================== 17 29 99.4 32 GGTTCCCCCGCAGACGCGGGGATAGACCC # Left flank : ATCGTCTGGTCCGCCGCCGAGCCGCGCGGCTTTTCCGTCGGAAGTCGGTGATCCCGTCCATGATTGACCGGATCAAGACGCTTCTGCGGCTGTCCGGGTCTGACGGTGGGGAGAACAGCCACGATGACGGCAGGGAGACGGGCTGATGCCCATGGTCGTCGTGGTCACACGCGATGTCGAAGACCGCTATCGCGGCTTTCTGGGGTCGGTGATGCTGGAACTCGCCCCCGGCGTCTACGCCCACCCGCGCATGAGCGCCGGTGTGCGCGGCCGTGTCTGGTCAGTGCTGACCGACTGGCATGACTCGCTGCGCCGGGGCGCCATCGTAATGACCTGGGCTGACCGTGCCGCCGACGGCGGCCTCGGCCTCGCTAGCCTTGGTGACCCGCCCAAGGATATCGTTACGCACGGCGCTTTCCTTCTCGTCCGACGCCCCTTGCGGCGAAGCTGACGGCCGGTTCTTTGATAAAGTGAATTAAGTCAGTGTCTTATAGGGCAGA # Right flank : CTGACTTGGTACGACTTCGACAGCGTTGTTTTCGGTTTCCCTGCAGGTGCGGGGGGAAGAGGCGAACGAGGCAATCGCCCAGCGGGCCGAGGACGAGGCGTTCGCCGCGCTGGATGCGGCTCTGGCAACGCCGCCGGGTGAAGTTGGGGGTGTCGGGAGTGCGTGCGCTGCTGGCGTTCGTCATCGACGAGGCCGAGGGTGACCCGGACCTCAGCCGGAACGGACTGGCTGCGCTGAAGCGTAAGCGGTGTTCTGGCGTCACCTTCCAACGGAAGCAGGGCGGAGCGAAGCTCCCGGATCGCATGATCGGGAGAACGATTTGTGTCTGCGCTCGACCTTACGCTTGACCAGGAGCCCGTGCGGGTGCGCCGGATGGAGGTGATCACCGGCGATGTGGGCCGCCGGACCTGGTCGCCGGAGGAGAAGGAACGGATTCTGGCCGAGGCCGCGGTGCCGGGGGCTGTTGTTTCCGAGGTGGCTCGGCGTCACGGATTGCGGCC # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GGTTCCCCCGCAGACGCGGGGATAGACCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,3] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [53.3-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.42,0 Confidence: HIGH] # Array family : NA // Array 1 31546-31757 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP029355.1 Azospirillum thermophilum strain CFH 70021 chromosome 4, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 31546 29 100.0 32 ............................. GTCAGCAGCTTGGCCGCCGCCGCAGACGCAGC 31607 29 100.0 32 ............................. TCGCCGAACTGCGCCGACAGCACGCCCTCGTC 31668 29 100.0 32 ............................. ACCAGCAGGTTGATCGCCGAAGCGGTCACCGT 31729 29 93.1 0 ..........T.................A | ========== ====== ====== ====== ============================= ================================ ================== 4 29 98.3 32 CCCTTCCCCGCAGGCGCGGGGGTGAACCG # Left flank : CCCGGCCCGCACAGCTTCAGCCCGGTGTTGTCCACCAGCAGATGCAGAGGGGCACCGGCGGTGCGCGGCGGCTTGGGCAGGCTCACGGTCTGGGCGCGCCGGCTGATCGTTGAGTGGTCGCGCACCGGCAGGTCAAGGCCAAGCAATTGAAGGACGGAGCCGATGAGCCCCTCGGTCTGGCGCAGGGCCAGCCGGAAAACGGCACGCAGCATCAACGCCGTCGTGATCGTCAGGTCGGAGTAGGTGGGCTGCCCGCCCGGCGTGCTGCGCGGCGCGGCCTTACCAGCCGGCGATCGCCTGTTCGGACACCCAGATGGTCAGGTTGTCGCGCTGGCGCAGGGCCGCATCGGACTCGGCCCAGTTGAGCATGCGTCGTCTCGGCCGGGAGATATGGTGCCGACGAGCGGCATTGACCTTGTGGGGCATGGTTGCAGACCAGTGTGGCGGCGGAACCTCCCCCTACGACACCGACGATATCGCTGCAACACACTGGTGCAGTG # Right flank : ATTACCGAGGGAAACACAAAGCCAAAGTGCAGTAAGCATCAGGAAATTAGCCAGGTATCCCCTAGGCTGATTGTGATCAAAAATCCAAGATTTCCAGTCAAGTTCCAATCTGTTCGAATGGGTAACAGGAGGAATCGATTAATGGGAAAAAAAACGGATGGGTGTTCGTCCCTCTGATCGCATGATGACGGCAAGAGTTCTCTGTCTTTTCCCTTCTGTTATCCTCTCTGCCTCCCAACCGAAAAGCTCCTCCAGAGCAGGGTAGAATCCGCCATCGAGAAGAGACGGACACATGACCCTGCGTTCGAGCCAAGCTTCAAGCTGTGCCCGCAGAGGACGCAGGGGCTGCTATATCGCCCACCATAACAAATGGTCATTTGGTCATTTGATCTTTTGGCCTTTTAATCGTCTGGCCACTTGACCAGCGATTAACTCCTTGATTTGATAGAGTTGGGCTTCAAGAGGAAAACCACCATGCCAGTCATCGCTCTGGCCAGCGT # Questionable array : NO Score: 5.77 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCCTTCCCCGCAGGCGCGGGGGTGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [3,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCAGGCGCGGGGATGAACCG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.00,-12.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [36.7-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.27 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 517847-517509 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP029356.1 Azospirillum thermophilum strain CFH 70021 plasmid unnamed1 Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================== ================== 517846 37 100.0 40 ..................................... CTGCGCCAAGCTGGGTGGCGATGACTATAGCGCAGCGCCC 517769 37 100.0 37 ..................................... CGGCCGGTCTCATCAAGGCTGGTGTACCAGCGCGCGA 517695 37 100.0 39 ..................................... TGCCATTGGCGCATCAGCAGATTGTTGTACGTGAAACTG 517619 37 100.0 38 ..................................... TGCGCGGTCTGGCCATACTTGCGCATGTTCGGCAAGCC 517544 36 75.7 0 ...C.....CC.G.C..........A.C.-....T.. | ========== ====== ====== ====== ===================================== ======================================== ================== 5 37 95.1 39 GTCTTCCTGGGCAGTAATGCCCAGGCCTCATTGAAGC # Left flank : CCAGCGCGCCCTGACCGCGGCGATGCGCGGCGCCGCGGCGAAGGCCGGCGACCTCGCCCGCATGCAGGCCTGGGCCGGCCAGTCCGCCGCGCTCGCCCGCGCCGAGCCCGCCACCCCGCTGACCGGGCGGCTGTGGCGCGAGGCGGCGGAGCTGCTGGGCTGAAGCGCCGCGAGGTCCCGGACGGGGACGGGCACGCACGGTCCGGGCGACGGCGGGCGGCCTCCGCCGAGGGTGCCGCCATGCCGCCGCGAACATCGCCCTGTCGCATCCCGCTGCGCGTGTGCTAGCATGCCGCCCGGCTGCCGCTGCCGTGCGAGCGGTCCGGTAGCCGCAAAACCCCCGGACCCGCTCGCAACGGACAGAGCGTTGATTTTCCAGGGTTCTTGGACATCGTAGAGAACGAAACGGAACCGGATTTCCTGACCGATCGGTCAAGATCCCGGACCGCTCGAATCCGCCTCCGATTCGGGCGTCTTTCCAACGGGGTACGCGGTACCCT # Right flank : CCGGTCACCGACAGCACCGCCGGCCGCGCCGCCGCACGCCCCGGGTCCGGTTCTATTCAGTCATACGCATCATCACCGTTGCAAATTGGTGATCGATCCTCCTAATCCTTCGACGGCGGGCGCGCCGGTCGCTTACACTGGGTGCCGGCACGCTCGGCGGAGCGGCGGCCGGTGTCCCGGAGGTGTCGCGGAGGAGAGCATCATGCGCGCTCGCAGCATTCGCCCGTCCGGCGGGCCAGTCCCACCCTTCGCAACCGCCGCCATGGCGGCGCGATGACCGGCACGGTGATCGAGACGCGGGAGAATCACTGGGACGCCAAGCGCCGCTCGATCGCCGCCCTTGCACTGGCGCAGGTCCTGGCGCTCAGCCTGTGGTTCTCCGGCACGGCGGTGGTCCCGGCGCTGCGGGCCGAGGCCGGGCTGACCGACTTCCAGGCCGCCGCCTTCACCAGCGCCGTGCAGATCGGCTTCGTCGCCGGCACCCTGGTCAGCGCCCTGCT # Questionable array : NO Score: 2.81 # Score Detail : 1:0, 2:0, 3:0, 4:0.75, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTCCTGGGCAGTAATGCCCAGGCCTCATTGAAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [9,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-15.40,-15.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [23.3-33.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.78 Confidence: MEDIUM] # Array family : NA // Array 2 666726-668743 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP029356.1 Azospirillum thermophilum strain CFH 70021 plasmid unnamed1 Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 666726 36 100.0 29 .................................... AACGCTTGGTCAATTTGTATCCTGAGGTG 666791 36 100.0 31 .................................... CCAAGAGACGCGCGGCATGCGTCGCATCCCC 666858 36 100.0 30 .................................... ATCTTCGTCGGCGGCGACCGCTCAATGGGC 666924 36 100.0 31 .................................... GGAAGTAGCCGACAACGTGATCCAGCATCTT 666991 36 100.0 30 .................................... GTCGCGAGGTCGAGGGCGAGGACGCCGCCG 667057 36 100.0 30 .................................... ACCGGCACCACCATCACGGCGCTGGGCACC 667123 36 100.0 30 .................................... AATGTCGGCTCGGTCGGCCTGACCGTCGAG 667189 36 100.0 30 .................................... CGACAAGCGGCACCAGATGGCGGTCGTCAT 667255 36 100.0 30 .................................... TCGGCCGCCAGCTTGACGCGGGCGTACTTG 667321 36 100.0 30 .................................... AGGTCCGCGGTCGGCGAGACCGAGCCCGGG 667387 36 100.0 30 .................................... AACTCTGATGAAGTATGGTGCGAGTCCTGT 667453 36 100.0 30 .................................... AGCATCGACGCGAAGCCCACCATCCCGGTG 667519 36 100.0 30 .................................... TACGGGCTACATCGACTTCCTGCGCCATGA 667585 36 100.0 30 .................................... CCATGCATGGCCCCAATGGAGCCACCGCCG 667651 36 100.0 30 .................................... AGTCAGCAACTCATGGCGGATTTCCGTGCG 667717 36 100.0 30 .................................... GCCTCCCGCCTCCGGGACACTCCGAAGAGA 667783 36 100.0 30 .................................... GAGGATGGCGTTCTCAAGCGTCGTGCGCCG 667849 36 100.0 30 .................................... CGCAGCAGACCGCTGGGCAACAGAGCGTCG 667915 36 100.0 30 .................................... GATGGTGCGGATATGGTCCTGCACATGCAG 667981 36 100.0 30 .................................... GAGCTGCGGGTGTCGGAGGTCGCGCTGGTC 668047 36 100.0 30 .................................... GGATGGACCCGCCGGTCGGCGTCTTCAACC 668113 36 100.0 30 .................................... CGGGCAGAGAATAAGCGGATGACGGCGGAC 668179 36 100.0 30 .................................... CCGCGCTGTCTTGACCCACTTCACGCCGTC 668245 36 100.0 30 .................................... CCGCGCTGTCTTGACCCACTTCACGCCGTC 668311 36 100.0 30 .................................... GACGTCGGCGGCGTCGACGCGCGACAGCTG 668377 36 100.0 30 .................................... AACCGGGTTCTCGTCCATGTCTACTGGAGC 668443 36 100.0 31 .................................... GCAAACGTGCTGCTTGCGGGCCTTCACCACC 668510 36 100.0 30 .................................... CTTCAGCAGGTCGTAGACGTTGACCCCGAA 668576 36 100.0 30 .................................... GCGTCAGGTCGCTGTCCGGGTGGACGCGCG 668642 36 100.0 30 .................................... GGAATCAACATCTTCTTCAACGGCGGCGGG 668708 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== =============================== ================== 31 36 100.0 30 ATTGTAGCCGATGGGAAACCGCGGTCCAGCCGCAAC # Left flank : GGGGAAGGCACCAAGGCGTGGGCGCCAATGCCATTGGAATGGCCCGCACCCCCTCCGGCACCGTCGAAGGTGCCGCAACCGGCCTGACGGAACGCGGCGATGTTGAGCGGATACCGGATCATGTGGATGATGGTGCTGTTCGACCTTCCGGTTCTGACCAAGCGCGAACGCAAGGCTGCGACGGCCTTCCGCAAGTTCCTGCTGGACCAGGGTTTCGAGATGTCGCAGTTCTCCGTCTACCTCCGCCATTGCGTGGGCAAGGAGCAAACGGAAGCGCTGACCCGCCGAATCGAGAAGGCCGCTCCATCCACCGGCAAGGTGCACATCGTCTTCATCACGGACAAGCAGTATGAGACCATCGTGTGCTTCGATGGCCGAGTCCGCCAGCCCTCCCGGAAAAATCCGGAGCAGTACGTCCTGTTCTGACCGTCCGGACGGTGGAATCCGGGCAGAGAGACGGCGGGATAAAGCTTCTTTTTCAAAGCCTTACCCCGCAGCCG # Right flank : CGCGGCATAGAGCTGGGTCCCCGGCACGGTTCAGTTCGGCCGTGAAAGCCATACATGGTCAGCGTGCCTTCTCCGCTGGGCTTCACCGTGAAAGGGCGGCACGGCCGGCACCGGTCAGGATCATGTCGTTCTGCGGGGCGTGGACGCGGGCGCACAGCACGTCGCGGTGATGGCGCTCCAGCGGGTTGTCGCGCGACAGGCCGGGATTGCCGGTCACCTCCAGCGCCCGCGCCACCGCGTCGATGGCGTTGTTGGTCACCGTGTACTTCACCAGCAGGCTGTCGCTCTGCGAGGGTGCTGAACCACCGTCCACCGCCGCCGACAGGGAGCGCAGCAGCACGCCGTTGGTCAGCAGCAGCGCCTCGATCCCGCCGAGCGCCTCCTGCAGGCGGGGAACAGTCGCCAGCGACGCACCGCCCAGCGCCGTCGGCCTGCGGGCGTGCAGGAAGCCGACCAGCCAGTCGCGGGCCGAGCGGGCTATACCGTCATAGACGCCGCTG # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTGTAGCCGATGGGAAACCGCGGTCCAGCCGCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [9,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-8.70,-4.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [43.3-38.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.74,0 Confidence: HIGH] # Array family : NA // Array 1 328246-328722 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP029358.1 Azospirillum thermophilum strain CFH 70021 plasmid unnamed3 Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ====================================== ================== 328246 37 100.0 36 ..................................... CGGTGATGCTGAGTTCGGCCTTGACCGTCGCCAGTG 328319 37 100.0 36 ..................................... CTGGTCGATGGTCCTCATGTCCGGACGCTCCGGCCG 328392 37 97.3 37 ....................T................ GGGAAGTCCCAGCCCTTCATCCACATCAGCAGCGCAA 328466 37 97.3 35 .....................A............... AAGAGCCATCGCTAGGCGTATGTGAAGGTGTGCTC 328538 37 100.0 38 ..................................... GTCGAGGCGGCCGTCCAGTCGCTCTGCCGGCGCCTCTG 328613 37 100.0 35 ..................................... GCGATCACCGTAGGCATGACGCGGCGGATCACCGG 328685 37 73.0 0 ...AA..C.....CG..A....G......G....CA. | C [328698] ========== ====== ====== ====== ===================================== ====================================== ================== 7 37 95.4 36 GTCTTCCTGGGCAGTAATGCCCAGGCCTCATTGAAGC # Left flank : GCCATCATCCCGCCCCAGCCTCCGCGGGTCGAACAGCGCGACATGGCGCTGGATGATCCCGTCGGTCTGCAGCCGCTTGACGCGTTCCGGGCAGGCTCCGTTCCAGGCAGTCGGCCGGGCCGAGGGTGATGCGCCGGGCGAGGTCCACGGTGCTGGTGCGCCCGTCCTCCCGCAGTGCGCGGAGGATCTCGGGGCCGGCGGAATCGGGCGCGCGGCCCCTGGTGCCGGAAGCCGCCCCGGCCGCCGGATAAACCCGCGGGAGAAAGGCCGGTTCCCTCTCGCGCGCCGCGTGCTATGATGCCGCCGCTGCCGTGCGAGCGGTCCGGTGCCCGCAAAACCCCCGGACCCGCTCGCAGCGGACGGAGCATTGAATTTCAAGGGTTCTTGGACATCGTGGAGAACGAAAGGGAACCGGATTTCCTGACCAGCCGGTCAAGATCCCGGACCGCTCGAATCCGCCGCCCATTCGGGCGTCTTTTCAACGGGGTACGGGGTACCCT # Right flank : CCCGGTCTTGTTGACCGTGCCGGGCACCGGCGACCGCGGGCACGCCGCTCCCCGCGGCTGGCCGCGCTGTCCTGCGCCCGTCCCGTTCTTGCTTTGTTTCACGACCTCCACTACCCTCCGTGCGCCGGCCCTCCGTGCGCCGGCTCGCGTCGTCGCCGGAGGAAGGAGCGTCCCATGCCCCAGTTCGCACCGCAGCCCGCCCCCGCCACCATGCAGGCGATGCACAACGATCGTGCACGAACGGGTCTGCGCAAGTCCTTGATCGCGCAGCCCGACCGCCCCCTCACCGCCATTGTGCGGGGAGTGGTTGCTGCACAATCCGCCCCATGACGCCCGGCCCGCCGCCATGACCGGACGTGACAGCCTCTCCCTCGCCGAAGCGCGCCGCATCGCGCTCGCCGCCCAGGGATTCGCCAAACGGGACATCGCCGCGACGGACCCCGCCGACGCGGTGGAGGCGCGGCATCTGCGCCGGACCATCGGACGGATCGGGCTGCTGC # Questionable array : NO Score: 3.03 # Score Detail : 1:0, 2:0, 3:0, 4:0.77, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTCCTGGGCAGTAATGCCCAGGCCTCATTGAAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [7,9] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-15.70,-15.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-12] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [33.3-20.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.05,0.37 Confidence: MEDIUM] # Array family : NA //