Array 1 97528-95607 **** Predicted by CRISPRDetect 2.4 *** >NZ_MINZ01000003.1 Corynebacterium diphtheriae strain ST378-KZN-2015-45790 45790_contig_11, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 97527 29 96.6 32 ............................G TCGATCCTTTACCTGCTGCCACGCCGACGACA 97466 29 96.6 32 ............................G AGATGAAAGACTGGACGAACGCCCAGCTAAAA 97405 29 96.6 32 ............................G TCGCCTGCGGAAACCACACCCTCAAAGCGCTA 97344 29 96.6 32 ............................G CACTACTTTCCCATGGTCGTAAAGGTATGTTG 97283 29 100.0 32 ............................. CATGATCACACTCACAACCACACTCACCCTCA 97222 29 100.0 32 ............................. CTGTCATCGGATTTTTTGAGTTTTACCAACCG 97161 29 100.0 32 ............................. GTCTCGCGCCGCGACGCTAAAGCGGTGGGCCG 97100 29 100.0 32 ............................. CATTCTTAGCGCTTGGCGTCGTGCGAGCTGGT 97039 29 100.0 32 ............................. ACGCGCCCTACGTCGGCTAATTCCTCAGCAGT 96978 29 100.0 32 ............................. GCTTATTAGGGCTTCCCCGTCAACAACGGACA 96917 29 96.6 32 ............................G ATTCGACTTCCACCGATCCGATGTTTGCTCAC 96856 29 96.6 32 ............................T CCTCTGCGATTCGTGTGCGTATGGAAACCCTG 96795 29 100.0 32 ............................. GTTGGCGAGGGCACCAGATACCAATGTCAAGC 96734 29 100.0 30 ............................. TCGTCCACAACGGCTAGGCTCTCGGTCTCG 96675 29 93.1 32 .....T......................T CATGTGAAGGTGATGGTCGAATGAGTGCCGGT G [96673] 96613 29 100.0 32 ............................. CACGGCGTAGTTGGTAGGGGATGGTTCTTCAT 96552 29 100.0 32 ............................. ACGAGCGGTGGTCTAGCGTTCCTCCCCGCAGT 96491 29 100.0 32 ............................. CAGGTAAATAGTCGAGTTATCCGGATTCCTCG 96430 29 96.6 33 ............................A CAAGGCCACTAGACGCGTATTGCCACAGTTCGA 96368 29 96.6 32 ............................G GAGACCTGATGGCTAAAGCTACTGTGACTTTT 96307 29 100.0 32 ............................. ATCTACACCACACGCCGCACACACGAAATGCA 96246 29 96.6 32 ............................G AAGCCGCGACGAAAAAACAATAAATAGAGCAC 96185 29 96.6 32 ............................G TTTTACGGATGATTCCGAGCGTCCCAGTCGTG 96124 29 100.0 32 ............................. TCTCCCCAGGTCAGATAGAGGCCATCAGGGAG 96063 29 96.6 33 ............................G CAGGCCCCCACGTCAACCCCTGCCACGTCGAAG 96001 29 100.0 32 ............................. TGTGACGTCGCGCAATGGCAAGGTCTGGTACA 95940 29 96.6 32 ............................G TTGGCTGGTGCATCTTCGAATGGGATGTAGTT 95879 29 96.6 32 ............................G CGTCGGATGTGTGCGAGGGCTTCTTTTTTGGT 95818 29 100.0 32 ............................. ACAGGCGGTTGCGCTGATTGGACTAGGAATCT 95757 29 100.0 32 ............................. CTCAAGGCCAGAGCTGGAAAAGCCGACGCCGG 95696 29 100.0 32 ............................. AGATCGTTAAACCAATCTGCTTGCTTTGCGGA 95635 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 32 29 98.4 32 GTTTTCCCCGCACCAGCGGGGATGAGCCC # Left flank : CTTACTTGGAAAGAAGCTGAGGCATTGGCTGGAAACACAGTGCGTCTGCCAGCCCAAATGACACGTAGAGATTCGGATTTTAATGCCGTTATTGATTCGCTCGAAGCACAAACACCACCAGAATGGCAACGATCCGGTTTGCTTAAAGGCCAAGTTGCGTTGTTTTTCGACGAAAGAGGAGAGGCTCGTTTAGGTCGATTCCTAGTGCGTTATACCAATGAACGTGGATTAGAGGTGGAGGTCTGCCCAAAGGAAGACGCATAAAAGGAAACCCCGCTGGTGCGGGGAAGTATGCCTATGTAAATCTTGTAGAGATATTAAAAAGGCTCATCCCTGATCGCAGGGAACAATGCCAGCCTATGGCTAGAAGAAAGGACTAAGCAAATTTGGGTGAATGGCTGATCCTAAAACAGTAGAAATAAAGATGAAGCAGAAAAATTGCTGAAACAAAGTTATATGTAATAAGCTCTAACTGGCTCTAAACGTGCAGCTTGATAAGT # Right flank : AGGGACTTTGAGAACTGGACCGCCGTGATTCCTTGCACTAGCAGGGTGGATGAATCTTTGTTGAAGAACGGGTTTTGGGATCTGTGTTTTCATTCAGAGAAATCAGTAAATGATGGGTCTACTAAAAAATTTTGAAAAAATTAACTTTTAATATCTATAAGGTGTATTCTGTAGAGAAAGTGCTTCCTAAGTTGGGAGTTTTAAAACAATCAGGAAGGAGTTGGTGGTGGCTTCGTTACTGGAGATCCGCTGGATTCTGGCTCTTGATACTCAAGGTAACCAGATTTCAGTTGGAATACGAGATATTTTCGCGGGGGAGGTGCAGGTTGCCTATATTCAGGGGGAGTCCCCAGCTCAAGACTATGCTGTGATGCGGCTTTTGCTGGGTATTTTCTGGCGTGCCCATTCCATGGATATCGACATGGACGTGGAACCTTTTGATTTTCTTGAATGGTTCAACAAGATGAGACGTCAGCTTGCTCGAAAAGGGAAAGATCAGG # Questionable array : NO Score: 6.08 # Score Detail : 1:0, 2:3, 3:0, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.90, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTCCCCGCACCAGCGGGGATGAGCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCTCCCCGCGCCAGCGGGGATGAGCCG with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-12.70,-12.70] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [48.3-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.77 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //