Array 1 171670-170442 **** Predicted by CRISPRDetect 2.4 *** >NZ_LQFL01000007.1 Pasteurella multocida strain 3045PM isolate swab isolate 1 contig_7, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 171669 28 100.0 32 ............................ CTAAATGTATTCAACTCATGAACCTTATTGAT 171609 28 100.0 32 ............................ TCAAAATTAATCTACCAACTGAACTGGAATAT 171549 28 100.0 32 ............................ GATGTATTCCTCGCAATAAGAACGACCATAAG 171489 28 100.0 32 ............................ TCAATGTTTAAACGTTATAATCGTCTGTTTGC 171429 28 100.0 32 ............................ GTAGGGGGTAGTATGTCACTGGGTCGCTTATA 171369 28 100.0 32 ............................ ATTTCAGTTTCCTTGTGTTGTTTGTTAATCTT 171309 28 100.0 32 ............................ GGATCGATGATTGCTAGCAAGTAATCTTTGAT 171249 28 100.0 32 ............................ TTCCGATTTTTGATAGTCAAAGACTACTGAGT 171189 28 100.0 32 ............................ AAACGGTCGTGCGTCGTTCGGGTTGTGATCTT 171129 28 100.0 32 ............................ GAAACACTAGAAGATTTAACGGTCATTGAAAA 171069 28 100.0 32 ............................ ATTCGATTTCCAGTGCCGAAAATCCATGCCCT 171009 28 100.0 32 ............................ ATAATGACGTGTTCAACTAACGGCTGACAATC 170949 28 100.0 32 ............................ CACAACATGTGCTGAAAGTGCGTGAGATTTGA 170889 28 100.0 32 ............................ TACCCGATGTTAGAGGCAATCAAAGTGGAGCT 170829 28 100.0 32 ............................ AAAGTCTCATTTAACACCGCGCGACGCTGGAA 170769 28 100.0 32 ............................ AAGCCCACCTTGCGCTTGAACAGATGAATTAA 170709 28 100.0 32 ............................ TTTGGTGCGAATTTCACATCTAAGCTTGAAAT 170649 28 100.0 32 ............................ GTTGGTGCGAATTTCACATCTAAGCTTGAAAT 170589 28 96.4 32 .........T.................. GTTGGTGCGAATTTCACATCTAAGATTGAAAT 170529 28 100.0 32 ............................ GTTGGTGCGAATTTCACATCTAAGCTTGAAAT 170469 28 96.4 0 ........................A... | ========== ====== ====== ====== ============================ ================================ ================== 21 28 99.7 32 GTTCACCATCGTGTAGATGGCTTAGAAA # Left flank : CAATTACACCAACAATTATTGCGATCTGGCTTATCAGATTATGCTTTAATTAGCGAAGTGAGTAAAACGCCGTTGTCTACCGAGTGCCGCAGTTATAGTCGAGTACATCGTAAAGGGCAAAGTGCCATCCGCCGTACCGAAAAACGCTTGAAAAGTCAGGGAAGATGGGATGAGTCCATCCGTGCAGACATGCAACAACGTCAGCAAAATGTGGCATTTTTCCCACATTGTCATTTAAAAAGTGCGAGCACTGGTCAACGTTTTATTTTGGCAGTGAAAGAGAACAGAATGCCACAATCTTGTGTTGGTGTCTTTAATGCTTATGGATTAAGCAATAGCGCAACTGTGCCTCACTTTTAATCGCATTGTTAACCCTTTTTTCTTATTTGGAATGTTTCCGAATAAGATCAAAGGGTTATTGTTCTACCCTAAAAAAGGGTTTTCTTTTCAGATGTTCTTTAACAAATTGAAATATCCGAAGATATAACAAAATTCATTTA # Right flank : ACTCATAATCGGAAGAGAGCGAGTTCGAATCGTTCATTATAGACTAGATAGTGTAAACCCTCGCCGGTTTTTAAGACCGGTGTATCCAATACCGTTAAGCAACCTCATTTAAAGAACAGAAAAAGCCCATTATGCTTATCAGAGAATGGGCTAGATAAAAGGAGAGATTATGCGCAAGACCCCTTATATTCCGTCTTCGGATTTGAAAACCATTATGCATTCTAAGCGGGCGAATATTTACTATTTAGAACATTGTCGCGTATTACTAAATGGTGGACGAGTGGAATATGTCACCGATGAAGGGCGAGAATCGCTTTATTGGAATATTCCCATCGCTAATACGAGTTGTCTTTTGTTAGGCAGTGGTACGTCGATTACGCAAGCTGCGATGCGAGAATTATCCAAAGCGGGCGTCATGGTGGGGTTTTGTAGCGGAGGTGGTACACCATTGTTTAATGGCACAGAAGCCGAAATTGGCTGTGAGTTTTTTAGCCCACAAA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACCATCGTGTAGATGGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:57.14%AT] # Reference repeat match prediction: R [matched GTTCACCATCGTGTAGATGGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-5.70,-6.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [60.0-78.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 95846-91315 **** Predicted by CRISPRDetect 2.4 *** >NZ_LQFL01000006.1 Pasteurella multocida strain 3045PM isolate swab isolate 1 contig_6, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 95845 28 100.0 33 ............................ ATATACGGCAGTTAACGTAGTGCGCCTGTAAGA 95784 28 100.0 32 ............................ ATTAAGAGCTTAAACTCAAGAACAGTAGAAGC 95724 28 100.0 32 ............................ TTTAGTCAACTCAAAGTCAACTCAAAGTCAAC 95664 28 100.0 32 ............................ AAATGGTAAACCAACAGTAAACACTAAGACAC 95604 28 100.0 32 ............................ TTTTTGATAAACATCCGACCTTAAATGAGAAG 95544 28 100.0 33 ............................ CTGTTGAGCTTGTATTCTTTAAAGAATGATTGA 95483 28 100.0 32 ............................ ACTACGTCTTGAACATTATATTCTAGCATTTC 95423 28 100.0 32 ............................ TTTCATGATATCATCGCCTTGTGGATTGAAAG 95363 28 100.0 32 ............................ TTATTGAAAATGCGGTAGTCGCCTTTATAAGT 95303 28 100.0 32 ............................ ACCCTCAGGAGTCACCCCACCTACTGCCATAT 95243 28 100.0 32 ............................ TCAATGGCTGCTTCTGCTGCTGCTTCTACCAA 95183 28 100.0 32 ............................ TAAGTCTTCTTTCTTCATCCTGTTGAGCTTGT 95123 28 100.0 32 ............................ ACCTGAAAAACCTTTTGACATTGACACGAACG 95063 28 100.0 32 ............................ TACACTTCTCACCGATCAAGCCCACTGAGAAA 95003 28 100.0 32 ............................ GGAACACTTCGATAAGAACACACATGAGCTTG 94943 28 100.0 32 ............................ AAATTATTGCCAAGTATGCAATCGGTCATGGG 94883 28 100.0 32 ............................ CTTGTCTGTGAACTCAGTTGGTGTCCATCCAG 94823 28 100.0 32 ............................ TTTATGGAGCAGGGGACGCTAAGATTGGTGAG 94763 28 100.0 32 ............................ ACTAGATGCTGGGAAGACGTGTTTAGTTTGGT 94703 28 100.0 32 ............................ GCAATGCAAGACAGTAAAGCGTATGGAGCTAT 94643 28 100.0 32 ............................ CGCTGAAAAACATTATATAGAGGTAACAAGTG 94583 28 100.0 32 ............................ TTATGGTTAACTTATTCTTACAGGCGCACTAC 94523 28 100.0 32 ............................ TTTTAGACACGCAATTAGTCGACCAGCAGGTA 94463 28 100.0 32 ............................ GACGATAATATCAAAGAACTCCTTTATGTCAT 94403 28 100.0 32 ............................ GTTATCAGCGTCCACTAGGTCATTTAGTGTCT 94343 28 100.0 32 ............................ TTTTATCCAGACCGTACAACGTTTGAACCGCA 94283 28 100.0 32 ............................ AATCAGTGCAACCTGTGCTGTCTGTAAATTGT 94223 28 100.0 32 ............................ TATTGACAACTGTAATTATCTTCTATATTATA 94163 28 100.0 32 ............................ TACGGCTTCTTCTTCACTTACATATTGTAAGA 94103 28 100.0 32 ............................ TAAAGGCACACTATCCCCTACCTCTTCTTCAC 94043 28 100.0 32 ............................ TTTAGTTACTCATCTAGTCATCCATTACTCAT 93983 28 100.0 32 ............................ ACCTTTAAACAGAAACGCTTTCGTTCCACTAG 93923 28 100.0 32 ............................ AAAAGGTTACACACCTAAGGAGGTATTAGAAG 93863 28 100.0 32 ............................ TTTAGTCAACTCATCGTCATCCTTTAGTCAAC 93803 28 100.0 32 ............................ CCACTAAGACTACTTTGAGCACGTCACCTTGA 93743 28 100.0 32 ............................ TCCTCGCGCTTGGACGAGAATCGACAAGGGTG 93683 28 100.0 32 ............................ TACTAAAAGACTCCTCTTTGTTATCGAAGTGG 93623 28 100.0 32 ............................ TCTGTCGGCTCTAACCACATGACCAAATTAAT 93563 28 100.0 33 ............................ CAAGTGAGTGGGCAGGGTATTGTAAAGGTAACA 93502 28 100.0 32 ............................ ACAAACTCCCTAAAGCTTTGCCGTACATTAAA 93442 28 100.0 32 ............................ AAAATTCACATACAAGGTACTATACCGTCGGA 93382 28 100.0 32 ............................ GTAGATGTGCCATTCAACAAGACTCAAGTACG 93322 28 100.0 32 ............................ ACTATAATGCTACCTCACTGGGTTGGCGCTGT 93262 28 100.0 32 ............................ ATGTTTGTTCCCCTAGTTGGTTGATTGGTTGT 93202 28 100.0 32 ............................ ACTTCCGCTTGAAAGTGCTGGTTTGAAACTTT 93142 28 100.0 32 ............................ ATGGGGACAATCAACGACCAGTTAAAAGCAGG 93082 28 100.0 32 ............................ GAATTTCCCGCCATCAACGCGCACTTTTCCGC 93022 28 100.0 32 ............................ ATTCGTGACAAAAGACGAATATAAGAAAAGAA 92962 28 100.0 32 ............................ AGTGCGGCGTGCCGTCGTGGTGTGGCTCTGTT 92902 28 100.0 32 ............................ GATCGCAAATAAAATCGCCGATCTTGGCACTA 92842 28 100.0 32 ............................ GCGTCGGCGGGAAGTTATCGATCAATCCCTGA 92782 28 100.0 32 ............................ TGCTGTTCACTGGCACAATAGTAATGGTTCAT 92722 28 100.0 32 ............................ TAAATAAACCACTAAAACTAAGAATTTTTTGA 92662 28 100.0 32 ............................ GTTTGGGAGTGGAATTGTTTGATGAAAACAAA 92602 28 100.0 32 ............................ GTTTCTGACACTTCAACTGTTAGACTGAACGT 92542 28 100.0 32 ............................ TTCTGCGATTTTAGTCGGTGGGTATCATCGTG 92482 28 100.0 32 ............................ AAGCCCTTGTTACACCAACCACCTCTGTTGCC 92422 28 100.0 32 ............................ CAGCTCGCAATGATTCTGTTTGAAAAGGCGTT 92362 28 100.0 32 ............................ TTCGTCCGTAGTTACAAACAGCATAGCTCTGA 92302 28 100.0 32 ............................ TCTATATATTGTTTTTCATTGGGCTTGGTCGG 92242 28 100.0 32 ............................ TCCAAGCGCGAGGAGGGATAACCATAGGCATA 92182 28 100.0 33 ............................ CAGGAAAAAAACCGAAGTATTTAAGAGATTTCA 92121 28 100.0 32 ............................ ATTTACCCCTTCAATATCGGTTGTGTATTTCA 92061 28 100.0 32 ............................ CGTTGAAGAAACCTCCACGCCTTTAAAATCAA 92001 28 100.0 32 ............................ TTTGAAAACCCGGTATTTTGATTTTTCTCAAC 91941 28 100.0 32 ............................ ATTTATCCCAAAGCGACATGTCATCAGGCATC 91881 28 100.0 32 ............................ CATTTGGGGCAACGAATGACGAAAAGCGCACA 91821 28 100.0 32 ............................ TCTTTCCGTTTATCTTTGAAAAAATATCATAT 91761 28 100.0 32 ............................ GTTTAGTAACGGGTCAAGCGGAAGATGAAATC 91701 28 100.0 32 ............................ GCAATTTTGGGTATTCGTTTTGATTCTGAATA 91641 28 100.0 32 ............................ AAAAGCATTCTGTTTACGCGTAAAAGGATCAA 91581 28 96.4 32 ............G............... AGCTTTAAGCTCTGCAAATGCCGAACTCATAC 91521 28 96.4 32 ............G............... GATTATTTTAAGCAACGGAGCGGAATTACACT 91461 28 92.9 32 ............G....T.......... GTCATCTTCCAATTCTTCTGTTTTCTGCTCTT 91401 28 96.4 32 ............G............... TAAAGCGATCTTGGCTCGATTATCAGATTGGT 91341 27 85.7 0 ....................T..C-..T | ========== ====== ====== ====== ============================ ================================= ================== 76 28 99.6 32 GTTAACTGCCGTATAGGCAGCTTAGAAA # Left flank : CATACAGCGCAGATACCTATTTGCACCGTATTGGACGTACTGCACGCGCAGGTAAAAAAGGCGTAGCGGTGTCTTTTGTGGAAGCCCATGATTATAAATTGTTGGGTAAAATCAAACGTTACACCCAAGAATTACTGAAAGCACGTATTATCGAAGGTTTAGCTCCTCGCACCAAAGCACCGAAAGAGGGAGAAGTTAAAACGGTCAGTAAAAAACAAAAAGCCCGCATTAAAGCAAAACGTGAAGAGAAGCAAAAACAAGAGCAAAAGAAAAAAGTGAAACTACGTCATAAAGATACGAAAAATATTGGTAAACGTCGCAAATCCAATACACCTCCTGCTAACGCAGAATAATCACATCTAAATTGCTAACCCTTTTTTCTGGCTAGATTATTTATCTAATAAGATCAAAGGGTTATTTCTATGTCTAGAAAAAGGGTTTTTAACAGTTTGATAGGCGCCATACTTGCTGAATAAAGGGATGTCGATTAGACTGTTTTA # Right flank : TGACTGTTGGTATATTACTAAAACAGTTGGATATGGGGATCGGTCTGTTAGCTTATATCGTGTTTAACGATAAAAGTGCGGTCAATTTTTGGAAAATTTCATCAGCTTCAATCTTATCCATACTCTCAGCAACGAGATAATGCTGGTTTTTGCCGTAGGAGCCGATCAGTTTGGGATCCGTAGCACCATAGAGAGTCAAGTTGGTTTTATCGAGTGCGGCACTTAAATGTGCCAATCCGGTGTCAACAGAAACAACAGCGCTGGCATTCACAATCTGCTGTGCTAACTCGGATAATGTGGATTTTGGCAAAATCGTCACAAGATCAAGCCCTTGGGCGATCCTCTCTGCACGCTGTTTTTCTTGAGGATTTGACCAAGGTACGTGAATTTGGATACCCTGTGCGGTCAGTTTTTCTGCTAATGTCCGCCATTGTTTGTCCGGTAGAAATTTATCTTGGCGTGTGGTGCCATGGAAAAAGAGGACATAAGGCATCGTTTGT # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTAACTGCCGTATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:57.14%AT] # Reference repeat match prediction: R [matched GTTAACTGCCGTATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [61.7-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //