Array 1 196543-192971 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP043557.1 Vibrio cholerae strain RFB05 chromosome 1, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 196542 28 100.0 32 ............................ GATGAGCAGCTTGCACAGTTAACAGCCACCGC 196482 28 100.0 32 ............................ AATGGGCGGCAGAAGGTAACTTCTCACCCATG 196422 28 100.0 32 ............................ ATCAATCATGTAATGAGAAGTAGGAACGCCAT 196362 28 100.0 32 ............................ AATCATAGGTAATCCGGGTGACGGTGCTTCGC 196302 28 100.0 32 ............................ AGTTTGAAGGTCTTTTATGAGTAAATACCCCG 196242 28 100.0 32 ............................ ATCACGAAAAAACGGGTGAATTCATTCAGAAA 196182 28 100.0 32 ............................ ACCCTATCTACAGACAAAGGCATGGTGAAATG 196122 28 100.0 32 ............................ AATCCAATATCTTTGGCGTAGTCATGCTCCAT 196062 28 100.0 32 ............................ AAACTCAGCCGATTGCGTCAAGGAAACATTCC 196002 28 100.0 32 ............................ CAACGGGACCTAGCAAGAACGTTAATAAAAAC 195942 28 100.0 32 ............................ GAATACCGCAATGCCATCGTGCGCCGTAATGG 195882 28 100.0 32 ............................ ATAATGTGGAATCACCTGCTTCAACCGCATCC 195822 28 100.0 32 ............................ ATTTGGGTTACTCCGTATCGCTTACGTCGATC 195762 28 100.0 32 ............................ AAGACTTGACGCAAATTGCGCGCACCGTTTGT 195702 28 100.0 32 ............................ AGTAAGAGAAGCAATCACTTCCACCTGATCAA 195642 28 100.0 32 ............................ TGTAAGCCTGTTATCTGCGTCATAATGACGAT 195582 28 100.0 32 ............................ ACCGGTACATTCGACCAAATCACAACTATAAG 195522 28 100.0 32 ............................ TTAACCATCACGATCACAAAGCCAGACGAAAC 195462 28 100.0 32 ............................ AACTTGAAAACCCGTGGCCAGTGAATCCTGAA 195402 28 100.0 33 ............................ CTCGCTTCGGTGTTGTGATGTAGTGGTCAATTG 195341 28 100.0 32 ............................ TGCCTCATACCACGAATCTACGTTTTCAGGAG 195281 28 100.0 32 ............................ GCTAAGTGGTTCGGGTTCCTGTTACACCCGAA 195221 28 100.0 32 ............................ GCTATGTCGGTCGTAGATCCAAATGTACCAAG 195161 28 100.0 33 ............................ CAATAGACGGCGCGTTTATTCTATCTTCTATTT 195100 28 100.0 32 ............................ TTTTACGTATCTTTAGCCGTGATTTAAAAGGT 195040 28 100.0 32 ............................ TATTAGGGGGAGGGCACGCCAGTTATGGGAAG 194980 28 100.0 32 ............................ GCTTGGTCACTCAAGCCAGTACAAAGCCCTTC 194920 28 100.0 32 ............................ TATTAGCGGCTCGAATTCTATCCCATGCTCTT 194860 28 100.0 33 ............................ AATGTACGGGGCTGGTGCGTTATGAGTGATTTT 194799 28 100.0 32 ............................ TGACCATCATTGTTGTAAGTCACAGTGTAGTC 194739 28 100.0 32 ............................ TTTTTGTAAAAACTCGATTCAACGCTTGAAGA 194679 28 100.0 32 ............................ TGGTCAAAGATGGTAACGCCTATGTAATCAAG 194619 28 100.0 32 ............................ ACGTTACTCAAGTCCGCGCGTCAGTTACTCCT 194559 28 100.0 32 ............................ ATCAATCCACAGCTTCAGGTAGGTAACTTCAA 194499 28 96.4 32 ...........T................ GTAATGGCCGTGCATTGAATAGAATTCAAGTA 194439 28 96.4 32 ...........T................ GTTAAATGGCGCTAAGATTGAGATGCTAAATA 194379 28 96.4 32 ...........T................ GCTTAGTGGTCACGATTGACTCACCAGCCAGT 194319 28 96.4 32 ...........T................ GAAGCTTTGAAGCTTATGGGCTGGCAGTCCTC 194259 28 96.4 32 ...........T................ TAGTCGGCAGGGATGCCCCCACTGGCAGAAAT 194199 28 96.4 32 ...........T................ TCGCACGGCTCGTCATGGCTGATTCACACGGA 194139 28 96.4 32 ...........T................ GCAGGCAACATCAGCTATCTAGGTCATAAACA 194079 28 96.4 32 ...........T................ TGTCTCTGGCACTCGCCAACCCACCACGGTGT 194019 28 96.4 32 ...........T................ TGACCCATGGCGATGGCGAGGTGTTCACGCAT 193959 28 96.4 32 ...........T................ CCAAGAACTCACGATTACAGCAATAAACACCA 193899 28 96.4 32 ...........T................ GTTACTAGGGCGCGGCCTACCATAGAATAAAT 193839 28 96.4 32 ...........T................ TCTTGAACGGTAGACGCTACCACGCGGCGTTT 193779 28 96.4 33 ...........T................ ACATAAGCGTAAGATCCTGCTGGGATGTTGAAT 193718 28 96.4 32 ...........T................ TTGCGTTTCAAGTCATCCAATTGGAATTGAAC 193658 28 96.4 32 ...........T................ ATTGTAAGCATCGTCAGCCGTAAGCTTTACAA 193598 28 96.4 32 ...........T................ ATTTTTGCGGTGAGCAACACGGTGAAGATTTT 193538 28 96.4 32 ...........T................ AAGAGTGCGCTTAATAAGAGCAAGTCGAGCTC 193478 28 96.4 32 ...........T................ TTTCCATCCAGTTGCAAGCTCAAACTGCTTTT 193418 28 96.4 32 ...........T................ AGTATAGCCAGTAGGGAACTCTGAGACTGCAA 193358 28 96.4 32 ...........T................ AATCTCTAACAGCGTTCAGGTAAGTCGGGGCT 193298 28 96.4 32 ...........T................ GTCCGGGGTTCGGTAGTAAGTCGACCCGATGT 193238 28 96.4 32 ...........T................ ATCAAATCTTTTATCATTTGCTAGTACGAACA 193178 28 92.9 32 ...........T.....T.......... AATTGGGGGTAATGGGCTAGTAGGGTCATTGG 193118 28 96.4 32 ...........T................ TTTTTCTCATAAGTGCGGATGTAGCGTTCAGC 193058 28 100.0 32 ............................ GCACTGGTTGCAGTGGAATTGCAGCTCGTGCT 192998 28 89.3 0 ...........T.............TT. | ========== ====== ====== ====== ============================ ================================= ================== 60 28 98.3 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : GATGTGACTTACGTAAGCTTTGTACGCAAGCAGGTGAAATCGCCCGAACGAATAGAGCGGGATATGCAGCAAAAAGCCGCACTATGGGCTGCAAAATCCGGCAAACCGCTGGTGGAATGTTTAGTGGATTTACAACAAAGCAAGCCGACAGCGTTGTGCACCTTGCCCTTTATTTACTTGCATAGCCAGCAAACCAAGCTGCGAACCCCAGAAAAAAACAGCAAGTTCCCGCTGTTTATTCAGATGCAGCAGCAAAGCACATCACAAGATGGGAGCTTTGATTGCTATGGCTTGAGTAGCAAAGCGAATGGACAGTCAATATCGGCGACCGTACCGCACTTTTAAATTGAACGAAAAAGGGTAATTTTTACCCTTTATTTTTGCTCTTTAAAAATGTGCTGTTAAAACAAATAGTTGCAACGGGTTGTTTTTAACAAGGTAAAAAGAAGATTTTTATCCTAACATCCTGTTGCAGCTTATTTTTATCGGTTTATTCTATT # Right flank : GAAAGTAAATCAAACGAGGCAGTTCACTTTCTAGATTACGTTAAGGTTCTTACGTTCTGCTACGCATGTTTATTAGGGTTTTCTTAAATGGTCTTTTCACAAGCATTAGTGACAAATTTCCGAGGTGTAATGATTAAGATAGCCCAGCTGATGAGTATCAGTTGAGGGGTAGTCACCATGAGCATTGTTGGTTGTGTTAATATCAGATCCAAGCATATCGATCGAACATGTCAGATGGTCTCGTAAGTCAAATTTTACTCAGAGCGAGTTTTGCGTCAATAAAAATCCTTTTAAAATCATAAAGTAATGAGCTATTGGATTACATCAGTTTCCATGTCTTAAGTGGAGGTTATATTCTAGATTATTTTCAATTGCCGAGTACCAGTCACAGATAGGCTACCTTTGGCGGCCTCTTCTATATGCTCGCTCCACCAGCACATCATTGGTTTTCTGCGCTCAAGGTAGTCAGTGCGGTTATAGGCACTGCGGACCTGATTATC # Questionable array : NO Score: 6.09 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.92, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [61.7-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 145535-146747 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP043558.1 Vibrio cholerae strain RFB05 chromosome 2, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ================================== ================== 145535 32 100.0 34 ................................ TTTAAAGAAAAGGGGATCGCCGCTGAACTCGGCA 145601 32 100.0 34 ................................ CACTTTGCCAACGCTGCTTTCGGCTGGCGCTTCA 145667 32 100.0 34 ................................ CTACTCGATACATCACAAGTCCTAAAGCCTGTGA 145733 32 100.0 33 ................................ GTTAACCTCTCGCTCGGTGAGTTATGGGAAGGT 145798 32 100.0 34 ................................ TGATTGCTTATCTTATTAATCTAGTACGAGTGCC 145864 32 100.0 33 ................................ TCTAAGTCTTTCTCTTTGAAGTAGCGAGCATAA 145929 32 100.0 33 ................................ CCTAATAACCAGACGGGTGCAGCGGCGACGGCA 145994 32 100.0 33 ................................ TCTTTAAACGGACGTGTGATCAGCGATTGGGGC 146059 32 100.0 33 ................................ CACTATCGTGGATATTATCAGGCAATGCGCTAC 146124 32 100.0 34 ................................ ACTAGATGTAGCTCAAGAGCTAGTTGAAAAGCTA 146190 32 100.0 34 ................................ ACCAAACACAGCGCATCAGTGCCATCGGCCAAGC 146256 32 100.0 34 ................................ AATTACTTCATGGCGGGAATGTCATAGAAGGAAA 146322 32 100.0 34 ................................ ATGACTGCAATGGTTCCGTCTGAGTTTAGGCAGT 146388 32 100.0 33 ................................ CGAACCTCTCCAATTAAGCAAGTCAGTAGGCAT 146453 32 100.0 34 ................................ TCCGAAAAGGCAAGGACGGTTATTGGTTCGGCTG 146519 32 100.0 33 ................................ ACAATCACCCAGAACACGATTGGTCGTCGCACT 146584 32 100.0 34 ................................ AGTGAAGATGACGGTGGCCGAGCGGCAGTGATTG 146650 32 100.0 34 ................................ ATCATAGATTGAGCTATTACTGGCGATATCGTTG 146716 32 96.9 0 ...............................T | ========== ====== ====== ====== ================================ ================================== ================== 19 32 99.8 34 GTCGCGCCTCCCGCAGGCGCGTGGATTGAAAC # Left flank : CCATTTGTGATCAAAAAATAAGGAGCGAGCCATGATGGTATTGGTCACCTACGATGTATCCTTTGCCAGTGAAGATGGTCAAAATCGCCTCAGACAATTAGCTAAGGTGTGTTTAGATAATGGAGTAAGGGTGCAGTATTCTGTATTTGAATGCGAAATAGATGCCGCGCAATGGCTGCGCTTTAAAAATAAGCTGCTGTCAATTTACGACCCTGAAGTAGACAGTTTGCGTTTTTATAAGCTTGGTAAAAACTGGCAAAACAAAGTAGAGCACCATGGTGCGAAAGAAGCCATAGATATATTCAGAGATACCCTAATTTTATAGTCGCTAGGCTTGAGTTCTCAGTAAAACACTGGGGATCTAGCGATTGCATAAGCTCTTTAAAAATATAGGAAATAATTATCTGTATAGATTCACACAAAGTAGTTTTGTGCTACCGCGCAAAGTTAGCGGTAACCAATAGAGTGTGTTAGTTTGTACGTTCCTCTAAGAAGAGGCA # Right flank : TAAGTATTGTCACATTATTGCAGGCAATTTGTTGCCCGTGAGCAAGTTTTTGCCTCGCCAATTTTCGCGTTATCATGCGCTTAAAGCAGAATAAGCGAGGATGTCAAAGCCATGACAAAAGATATTAGTCGGTACAATATGCGTTGGGTTGAGGGGGACACTTTACCTGAAGCTCCAAAGCCTAAACTTTCTCCGAAAGAAAGGTATTTAAAGCAACTCCAAGAGAATCATCGACAATCTGAAGAAACGTGGTCTTATGTCCAAGCAAACGAAGACCGTTATGCATTACAAAGAGCGGATGTCCTTACTCGCCGAAATGCCTCACAAATGCTTGATGACTCTCTTCGTGACTCACTAAGTTCGCAGTGTTCACTTGAAGAAGAAATGGCAAAGAATCATCAACATGTTCTTATTGCAGACTTAGAAGATGCCCATAAAATCTTGCACAACATTTGGTTGGAGTCTGGTCGTGATGTTGCTGCCATTGCTGCGAATATCAA # Questionable array : NO Score: 9.25 # Score Detail : 1:0, 2:3, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCGCCTCCCGCAGGCGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-7.20,-7.20] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [56.7-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0 Confidence: HIGH] # Array family : NA //