Array 1 40927-39432 **** Predicted by CRISPRDetect 2.4 *** >NZ_NKDD01000017.1 Escherichia coli strain MOD1-EC912 MOD1-EC912_17_length_101202_cov_39.4061, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 40926 29 100.0 32 ............................. CCCGTCGATGACCTTGCCGAACGGGCTGAACG 40865 29 100.0 32 ............................. GTCTGTTATGCGAATATTTTTATTCTACTTTA 40804 29 100.0 32 ............................. GTTTTTACTCTCTGCCGCTGAGCGTCACACGG 40743 29 100.0 32 ............................. GACTGCATATGAGCACGAGACACCCGGTAATT 40682 29 100.0 32 ............................. AACGTCAGGTTGTCGCCGCTCTGCGTGGTCGC 40621 29 100.0 32 ............................. TTCCAGCATTTACGCGGGGGTGTGCGAATGAT 40560 29 100.0 32 ............................. ACCATAAACATTATCCCCCGGCAAATTACCGC 40499 29 100.0 32 ............................. TCGATGCCGAACACGCTAAATATCTCGCAAGT 40438 29 100.0 32 ............................. GTGCGTTGTTGACGGTCTGACCTTCCCGCTCC 40377 29 100.0 33 ............................. GCCTGATTCCCGTATTTGTGAGAGTAATAACGC 40315 29 100.0 32 ............................. CTATTCCCCTGACCGGACATACCCTGGACAAT 40254 29 100.0 32 ............................. GGCGTCAAACTCTTTGTCACTCATACCAAAGA 40193 29 100.0 32 ............................. CAAAATTTAAAATCATTTAAGCTTGTAAAACC 40132 29 100.0 32 ............................. GGTACACGGATATTCTGTCTAAAAGTTAACTA 40071 29 100.0 32 ............................. ACTGATAACGCCGGAGCCTTCTTTTTCAGCAA 40010 29 100.0 32 ............................. AGGTTGACGTTGATTTTGTTCGTTATGTTGCC 39949 29 100.0 32 ............................. GCGTCTCGAGCGCGGGACGATTCAAAACCAGC 39888 29 100.0 32 ............................. CTCCGCTCTGTGTTCGATAAACTCATCCAGCA 39827 29 100.0 32 ............................. AATTAAAATCCCCGTTTCTGTTACATGGGCGA 39766 29 100.0 32 ............................. ACGACGTTTTTTTTGAAGACATTTTGATTTCT 39705 29 100.0 32 ............................. GACTCAACCGCGCTTCCCGGCCTCACCACTGC 39644 29 100.0 32 ............................. GCGAAAAAATACGGCTGGATGCGACAAAAAAA 39583 29 100.0 33 ............................. GAGAAGAAGCTCCTGAGCTAACCGTTGAAGAGC 39521 29 100.0 32 ............................. CGGCTATGGAATTTATGGAGAAGTTTGGTTTT 39460 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 25 29 100.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTCCTTGCCGCAGGTGAAATTGAACCGCCACAACCTGCGCCGGATATGTTACCGCCAGCCATCCCCGAACCTGAAACGTTGGGCGATAGCGGTCATCGAGGACGCGGCTGATGAGCATGGTCGTGGTTGTTACAGAAAATGTCCCGCCGCGCTTACGTGGACGGCTCGCAATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTTGGTGATACATCAAAACGTATTCGGGAGATGATCTGGCAGCAAATTACCCAACTGGCAGGTTGTGGAAATGTGGTCATGGCCTGGGCGACAAATACTGAGTCTGGTTTTGAGTTTCAGACCTGGGGCAAAAACAGACGTATTCCGGTGGATTTGGATGGGTTACGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAAGTTAGACGTTCTTTAAAAATAAGGAAATGTTTGAATTTAGTTGGTAGATTGTTGATGTGGAATAAATTTGTTTAAAAACAGATATGTATGCTTAGT # Right flank : GGCGCACTGGATGCGATGATGGATATCACTTAGAATTCCCCGCCCCTGCGGTAGAACTCCCAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAGCGGTAGCATTATCCGCATAACATCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGTTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCCGGGAAGGCAGGTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGGTTGGTCGTTGCGGCTATTCCGTGACTGCGCGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGAGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACAA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [43.3-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 57388-56444 **** Predicted by CRISPRDetect 2.4 *** >NZ_NKDD01000017.1 Escherichia coli strain MOD1-EC912 MOD1-EC912_17_length_101202_cov_39.4061, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 57387 29 100.0 32 ............................. CGTTATTTACTGCTTTTTCATCCGCTCTGCTG 57326 29 100.0 32 ............................. ACTCCGATAGCCTGCTCAGAATTAAGGCGCAG 57265 29 100.0 32 ............................. CCGCCGATTTCCCTGGCGTCAAAAGCGGTGAG 57204 29 96.6 32 ............T................ ATACAAACGCGGTGTTTATCAATATGAATTTT 57143 29 100.0 32 ............................. GCACCACGCGTACCCCGATGTTTGTTTTGCCA 57082 29 100.0 32 ............................. ATCCGGCTATATCTTTGAGCATTACAGAAATA 57021 29 100.0 32 ............................. CTATTGCTTTCGTACAGATTTTCAGTGGTGCT 56960 29 100.0 32 ............................. ATTCTTGATCACGCTTTTACCGAAGTAATGGT 56899 29 100.0 32 ............................. GGGGTAGAATTATTCTTCGTGAGCGATTTATC 56838 29 100.0 32 ............................. CGGCGTTCCGTGCGGCAATTGGAATCACACCA 56777 29 100.0 32 ............................. CGTTCTGAATCCGATATTCTTCAGCACCTTCA 56716 29 100.0 32 ............................. AGCGTCAATCAGCGCGTCTATCGCGTCACTTT 56655 29 100.0 32 ............................. ATTTGGGGGTATGAGAGCGCCGAGCCGTTCGG 56594 29 100.0 32 ............................. GCTCCCTGTCAGTTGTAATCGATAACGTTGAT 56533 29 100.0 32 ............................. TATTACGCGCCAGCAATGCTGACAGCGGCAAA 56472 29 96.6 0 ............................A | ========== ====== ====== ====== ============================= ================================ ================== 16 29 99.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTATTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTACTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : CCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACCCCTCATGTTCAAAATAGTTCTCCATGCCAGAGAAGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATGTTGAATTAATATCTATTAATTTTTTCTTTAGGTTAATAGTTTGTTTTTTAAGCTTGTTATTCATTGATTAAGTAATAAATCTGAAAATTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATTACCGTTTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTTT # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //