Array 1 260595-264710 **** Predicted by CRISPRDetect 2.4 *** >NZ_FOBH01000003.1 Nitrosovibrio tenuis strain Nv1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 260595 28 100.0 33 ............................ TCTCGATTTCTACCTTGTCACCCTGGAGCCTGG 260656 28 100.0 33 ............................ TTAGCTCGTTTTTCCGATAAAACCGAGAAGGCC 260717 28 100.0 33 ............................ CCCGATACCTCAGCCGACACCAGAAATGCGAGG 260778 28 100.0 33 ............................ CGATTTGAGCAAGACTACCGGGCTCGTCGTTGA 260839 28 100.0 33 ............................ CATCTTAGAGTCGCTTGCTGATTGCATGGCGGG 260900 28 100.0 33 ............................ TTGAGCTGACGATGAAAGAGGATGCGGCAAGCA 260961 28 100.0 33 ............................ CAGTGCCGCGACAAAGCAGTTCAGGCCGTGATT 261022 28 100.0 33 ............................ TCACCCGCCTGTTCACATCATGATCGCGGCGTA 261083 28 100.0 33 ............................ CCAGGTCAATATCAAATTTTTCAACCGCGCGAA 261144 28 100.0 33 ............................ CGGACAAGGAAGCAATGCCCGCGTATGTGATTG 261205 28 100.0 33 ............................ TACGGAAGCCCTTATCTGGCAGAAAAGGCAGGG 261266 28 100.0 33 ............................ CAAGCTGAATCCAAATAACGACACGCATCACCT 261327 28 100.0 33 ............................ TTCTTTAGAGTTCCACAGCGGCGCCGTCGCGTC 261388 28 100.0 33 ............................ CAGATTGCCCTTCCCTTTCCTGGATTCCGTTGC 261449 28 100.0 33 ............................ TGCTTCAGCCCGGCTCAAAGCTTTTGCTTTGAT 261510 28 100.0 33 ............................ TGTAAGCGTGCGCGTTATGCTTGCCACCTCGGA 261571 28 100.0 33 ............................ CACGAGACCGAAAGATGTGACGTTCTCGACCTG 261632 28 100.0 33 ............................ TCAAGGACGGCTCTAAGCCATTAAGCGCACGGA 261693 28 100.0 33 ............................ CGTCCTTCATGGCCTGCTGAGACAACACGAGGC 261754 28 100.0 33 ............................ CGTACTTATCAGGGGATTAACCATTGATGGGAA 261815 28 100.0 33 ............................ TAAGGAAAAAGACGCTGGAGTTCCGGGCGTGGC 261876 28 100.0 33 ............................ CAGAGAAGTTTGAGAAAAAGTTCCTGCCAGGCA 261937 28 100.0 33 ............................ CTGAGCTTGGATATAGGCCATCTGCAATGGAGA 261998 28 100.0 33 ............................ TTAGAGCAAAAGCAGTTTGAAATCAGGCTCAAG 262059 28 100.0 33 ............................ TGAGACATGAGCGCGATCACCAAGTCAGCGAAA 262120 28 100.0 33 ............................ TCAAGCGCAGCATGTGGTGCGGGCTACTTAAGG 262181 28 100.0 33 ............................ TGCGGAGTATCCGGGACACTGGCTGGTATTGGC 262242 28 100.0 33 ............................ TGGTTTTATTAGTGGTAAGGGCTGCGTAAGCCC 262303 28 100.0 33 ............................ TCATGTACCTGCGATAGTCAATCTTTTCTTTTC 262364 28 100.0 33 ............................ CGACAAAGCGACGACCTGAAAAACATCTGTGCC 262425 28 100.0 33 ............................ CAGTTCTTCGGTACTCGCAGCTGGACAAAGATC 262486 28 100.0 33 ............................ TAACCTTTTCGGGATCAAGGCGGATAAGTCGTG 262547 28 100.0 33 ............................ CTTCACTATATATATAAGGGCGATCATGAACCA 262608 28 96.4 33 ...............C............ CAGATAAAGGTAATTTTTTCATGACTATTGGGG 262669 28 100.0 33 ............................ CACGAAAAAACCGATGCGCATTCTTCAAGCTGT 262730 28 100.0 33 ............................ TCCATCAACGGCGCCGGATCGTGGGATTTAAAC 262791 28 100.0 33 ............................ TTTGATTGAGGTTAAAAGTGAACCGAGTAACAC 262852 28 100.0 33 ............................ TAGCCCAGGCGCTATCCGCCAAGATCAAAGAGG 262913 28 100.0 33 ............................ CAGGGATGGGCGACAACTCTATCGACTCATCGC 262974 28 100.0 33 ............................ TGACCGCATTTCCCGCTTCCGCATTGACACACA 263035 28 100.0 33 ............................ TTAATCCCGCTCTACACCCGCCCCGACCGGCTC 263096 28 100.0 33 ............................ TGCGCCATTGGCAGTCGCAACCGATACAGGATT 263157 28 100.0 33 ............................ TGACTCTGAGATGCAGGAAAGGCGATATGGCGA G [263179] 263219 28 100.0 33 ............................ CACCTGAGACTGCACGATGAGCGGCACTCTCTT 263280 28 100.0 33 ............................ CTAGTGAGGAAGCAGAGAAAATTATCGCAGTGG 263341 28 100.0 33 ............................ CATTAGAGCTTCTTTGCCAGCCGGTGCGTCCGC 263402 28 100.0 33 ............................ TCTTGATCTGTTCGGCAGAAAGCTAAATGAGTT 263463 28 100.0 33 ............................ TATTCAAGAACGTGCCAGCCTCTGATGACTTTT 263524 28 100.0 33 ............................ CTGGGGTGCCGGACAGATTCGCTTTTTTATGTC 263585 28 100.0 33 ............................ CCTACGAAAGCCGGGTGTTGCACGGTCACGAGC 263646 28 100.0 33 ............................ TCATGGATGATGGGGCGGGGCGCATGTCGGGGC 263707 28 100.0 33 ............................ CTCCGTCGATATTCAGATGGACGTCAACAAGCG 263768 28 100.0 33 ............................ CTTGCTAAGGCGCTAAAACAACTGATCGGCGGC 263829 28 100.0 33 ............................ TTCATGAAGCAGCTCTGGGAACTCAAAAAGTGC 263890 28 100.0 33 ............................ CTTTGTATCTCACGTGCGCTTGCCGCTTACTTC 263951 28 100.0 33 ............................ CGATCACCCGCTGCTGCCAGTCTTCCTGGATTC 264012 28 100.0 33 ............................ CGAACCGTGGCACATGTTCAAAGCCCCGGATGA 264073 28 100.0 33 ............................ TGCAGTCCATGGCAAATTTCCGCTGGGCTGGCC 264134 28 100.0 33 ............................ TTTAAGATAGGCGTCGGCAGAGGCTGCATAAGC 264195 28 100.0 33 ............................ CGAGATCATCTGGCGTGATGACAAGCAGGCGGT 264256 28 100.0 33 ............................ CGATCCACTCCCTGGTATCAAGAATCACGGCGG 264317 28 100.0 33 ............................ TAAACATTTGTTTCGTGCTGATTACTTCACCAG 264378 28 100.0 33 ............................ TAGCCAAACGCCGCCTCGATCTTCTCTAAAGAT 264439 28 100.0 33 ............................ TTCCGCCTGCTCGATTGATCCAACCCTGGCCAG 264500 28 100.0 33 ............................ CAAGGAGCTGTCCGCCCTCAAGGGTAAGCCGGT 264561 28 100.0 33 ............................ TACCGATACCCGTTCCACTTGTCGCGGAAAAAC 264622 28 100.0 33 ............................ CTTTGTCGTATTCCGGCAATCGTCCGGTGATGA 264683 28 78.6 0 .......G...G....A....TAT.... | ========== ====== ====== ====== ============================ ================================= ================== 68 28 99.6 33 GTCTTCCCCACAGGCGTGGGGGTGTTTC # Left flank : CGCTACAACAAACACAAAGTATCTGCTGCTTTTCGCCAACGCGTCATTGAAACCGACTTACTGGGCAAGGTAGGCCAAGACATCGAGATTATGTTAGGTGTGAAAAATGCTCGTCGTGATCGCCAATGATTTACCGCCTGCCGTGCGCGGGCGAATGAAACTCTGGTTTATCGAACCGCGCCCCAATGTATTCGTTTCCGGCGTCAAGGACGCTGTTGCGAAGACCGTAGTGGATTATTTATACGATCATTGCCCTCGCGAAAGCGGTTTAATGGTTTTCCGCCGGATCCCTGCGGCACCAGGTTATGAGATTCGCGGCGTAGGCGATACCAAGCGCGATCTTATCGAGATTTCCGGTTTGCAGTTAGTAATCGAGAAACAAATACTGTCCGGGCCAGCGGCTTGAATCTTGTAGCCTTTGAATCCGGGCTGTTTTAGAGGCTCAATTACTGAAGCACAACCCGTAGTGCTACAGTAACGCTCCTTAACAATTTGTTGGT # Right flank : CGATGAAGTCATGGGATCTGAGGCGTGTTGATGGGTTTCCCCACTTATAACCAGGACTTGGGGTTCTAGCGGGACGGCACTCCTGATAAAACTGACAGGCGACTTTTTGGCGGAGAGAGAGGGATTCGAACCCTCGGTACGGTTTGAGCCGTACGCACGCTTTCCAGGCGTGTACCTTAAACCACTCGGCCATCTCTCCTGTGGAAGAATTCCTGCCGTAACTTGCAGGGGCGCAAAGAATAAACCAGAACGGTTTTTCCGGCAACTTTTCCAGTAGTATAGCTAAATTTCCGCTCATCCGTATCAGTGGCCAAGCGGCCAGCAATCCAGATTAAAATCAGAAACAGGACTCCCATGCAAATCAAATCACGCATTCGTACCATCGCGCATTATCCCCACGAAGGCATCATGTTCCGGGACATTACCACGCTGCTGAAGGATGCTATCGGGCTGCGCGCCACGATTCAGGAAATTGCCAAGCGTCAAAAAGAGGTCCAGAT # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTCCCCACAGGCGTGGGGGTGTTTC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCTTCCCCACACCCGTGGGGGTGTTTC with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.50,-10.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [56.7-50.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 346375-349947 **** Predicted by CRISPRDetect 2.4 *** >NZ_FOBH01000001.1 Nitrosovibrio tenuis strain Nv1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 346375 28 100.0 32 ............................ AGACCCCGACCCCGGCCCCGCCGAGTTGTTGA 346435 28 100.0 32 ............................ CGCTACAGACAAAGCAGCGATACCGCCAAATC 346495 28 100.0 32 ............................ TTTTGGGGGTCCGCTGGCAGTGCCTTTTAACA 346555 28 100.0 32 ............................ TGTTGACATTGGCGTTGATTTGCGCTTGCGAC 346615 28 100.0 32 ............................ CCAAGGCGCGAACCATAACCCCCCGATTTAAG 346675 28 100.0 32 ............................ TTATCGAGAATAGAGTTTGCATAGGAGCTACC 346735 28 100.0 32 ............................ GTTGATGGGCTTTGAACCTCGCCCGTTACCGA 346795 28 100.0 32 ............................ ATTGATCCTCGGGGTCATATGCAATAATCCGG 346855 28 100.0 33 ............................ CGAGTGAAGCGGCTAAGCTAACGGACGGAATGA 346916 28 100.0 33 ............................ CTCAAGCAAACCCTCCTCGCCCTCTTCCATTCT 346977 28 100.0 32 ............................ TTAAAGCGGAGTTCGATTTTTGGTCCGGCTGC 347037 28 100.0 32 ............................ GTCCGGGAGTTGCACATCGCGCACATCATTTG 347097 28 100.0 32 ............................ TTTAAGCCGATACAGAGACTTTCCCGCTTTTC 347157 28 100.0 32 ............................ AACCCAGCCGACCATCTGCCGCATTCTGAGCG 347217 28 100.0 32 ............................ ACCCGGTGACCGTATCCATCCAATTATCAGGC 347277 28 100.0 32 ............................ TATCACTGAGGCGGCTTTATGCCGTTGGGGAA 347337 28 100.0 32 ............................ TCTTTCGGCTTGGTTTTTATCAACGGCATTAC 347397 28 100.0 32 ............................ TTGACGCGATAAAGAAAGCCCGGCACGTTTCC 347457 28 100.0 32 ............................ ATTTTAAAAAGCCGAGTTCACCTTTAAGCGAT 347517 28 100.0 32 ............................ TCTGTGCTTGCTGGGTCAAAGATCACTATTGA 347577 28 100.0 33 ............................ CTACAGCATTGTTATCAAGTGGCTTTATGGAAA 347638 28 100.0 32 ............................ CGGAACTTGTTTAGGTTGTTAATCTCGGTGCC 347698 28 100.0 32 ............................ GTCTCAGCCCGGCTATGCGTGGCGCTATTTCA 347758 28 100.0 32 ............................ TACTGAAACCTTTATTACGAACAATAAAGGGG 347818 28 100.0 32 ............................ GGTCGGAAAGCTCGGTAGCTACAACGTCAGAA 347878 28 100.0 32 ............................ CATGCGCCGCAGTTCCAGCGTGACCGCATAAG 347938 28 100.0 32 ............................ TTTAAAAATGTTTGAGAAGTTTGAGAAAAATT 347998 28 100.0 32 ............................ TAATCCGGGGTAGCTCATTTCTCGTTCGCCAA 348058 28 100.0 32 ............................ ATCCAGGTCCGCATAGATGCAAGATGCGCCAC 348118 28 100.0 32 ............................ AGCTCAAGCGGGACCGAGTATCACTATCTGGC 348178 28 100.0 32 ............................ AATCCAAATTCGTGCCGTAGTGATAGCGGAAA 348238 28 100.0 32 ............................ ATCACGACTACCAGGACACACCAGAGCAACCC 348298 28 100.0 32 ............................ AGCCAGAATAAAATAAGCGCAGCGCCCCATTT 348358 28 100.0 32 ............................ CTGTTGCCGGACGCGGTTTAAACGCACTCACA 348418 28 100.0 32 ............................ TCTGGCATTTTTCCCCCGCTTGCAACCGACAA 348478 28 100.0 32 ............................ GTTTGGAACATGCTGAAAAGTCTGCCGAAGAG 348538 28 100.0 32 ............................ ATTAATAACGGAAATTTCGGATACATACCCGA 348598 28 100.0 32 ............................ TTGCCCATGATCGTCACAGGTCCGTACGGCAG 348658 28 100.0 32 ............................ ATGTTTTGACCGCCGAACATAGGGAAACCAAA 348718 28 100.0 32 ............................ TCGATAACTACAATAGGGCGAATGGCGCGGTC 348778 28 100.0 32 ............................ TGAGGTTAATTTTCAAAAGTTCTTCAGTAATA 348838 28 100.0 32 ............................ CATAGGAATCGCTGAAAGCAGCATGATATAAA 348898 28 100.0 32 ............................ TGAGACCGCGTGCTGTTCCACGTGCGCGACTG 348958 28 100.0 32 ............................ ATTGCGCGTACCTCGACGCGCCGCTTGAAACG 349018 28 100.0 32 ............................ TGGTTGAGTCGGCTGCGCAAAAAGAATCCGCT 349078 28 100.0 32 ............................ TAGTATGAGACTTGAGGTGTACTAATAGTGTA 349138 28 100.0 32 ............................ TCAGATCACCCCCGTGACCATGCGAAGCATTT 349198 28 100.0 32 ............................ GTCAGGCAGTTGCACATCGCGCACATCATTTG 349258 28 100.0 32 ............................ GATTGAAAGGGACCGCAAACCCTTCACGTAGT 349318 28 100.0 32 ............................ AATATAGAAAACCAGCGCACACAAGCGGCGGC 349378 28 100.0 32 ............................ GATAGGCGGCGCTCTGTTGCTGGCGTTCGTGC 349438 28 100.0 33 ............................ ACGTAGTACCGATACAGGAGGGCGGGTCAAATG 349499 28 100.0 32 ............................ TATTCCGGGCGGGTTGAGGCGCTCGCTTGGCA 349559 28 100.0 33 ............................ TTGCCATCATTGGAGAGCCTTTATTCGTATCGA 349620 28 100.0 32 ............................ TTTCCCGCCGCGCCGAATCTTTCAGGGATTTT 349680 28 100.0 32 ............................ CCGATCAGCCCCCGCCAACCTTGCGAAGCATT 349740 28 100.0 32 ............................ AAGACAACGGCAGGAGTTGTAGCCTCGGGATA 349800 28 100.0 32 ............................ AAGTGCTGCGGCTGTGATCAGCGCCATACTTG 349860 28 96.4 32 ...........T................ ATCAGGCCCCAACACAGACCGATTGAGCGATC 349920 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 60 28 99.9 32 GTTCACTGCCGCGTAGGCAGCTCAGAAA # Left flank : GACGCTTTCGGCTTTGATGGCGAGCGACTGGATAACCGGAATGCGTGATCACGTTACACTGATACCGCCAACCCGCGCGCCTGAAAATGCCAAGCATTGCGTCGTGAGACGCGTCCAGGTCAAAAGCAGCCCGGAACGGTTGCGCCGGAGGTTGATGCGACGCCACGACCTGGACGTCGAGGAGGCCCATCGGCGTATTTCGGACGAGGTTGCCCGGCTGGCGGACCTGCCTTACGTGCAATTGCGCAGCACCAGCAGCGGCCAGTCCTTCAGGCTGTTTATCGAGCATGGTCCAGCCCAGTCCCACGCTGTTGCAGGCAACTTCAATGCCTATGGGTTGAGCCAGGTGGCCACAATTCCATGGTTTTGACCATTTTTTAATGGGTCTGAATTTGTTCTTTAAAAATCTATAACTTATGTTCTGCCTGAATTTTTAAGTGGGTACGCTATTTTCTGTTTAATCTTGTTAGGGAATAGGCATTTGCATGATTTTTGATCCA # Right flank : AAAGTAGTGTGGAGGATAGGAAACCCCGATCCGAAGCGCGACCGCCTTTTGCGTTGAGGAAGGTATGTATTCTGCAAATTCGACCGAACGGAGCGAAACATGGGTTACAGAATATGAGTTGCAGCGAGCCTCACATTATCTTCACCCAGCCTAAAGCGAACGATGCTTAGCCTCGACAGTGCGCCTCAGGTTGAACGCCAGAAGTTTTCCTAGCCGCTCGTTCCCCACTGGGCCGCTACCGATCCGCTGAATCATGTCGAAATCCGGTGCTTTGTTAATTGCGATCATGCACGGTCCACTGTCGAGCAGGGCGACGTCCCAGCCGATCACCACCTGGTCGGAGAACGCGCTGCCATGGGCATAGCGGACCAGATCGATCAGCTCAGGCCAGCATGGGAGCTTGCGGTGCAGAATCTGCGCACCGTTTTCGTAATACTGCTCATACCATCCATCCACGGTCGACCCCCAAGCCCCACAGGTGGCCCTCCCTAACTCGCCGG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCGTAGGCAGCTCAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGCGTAGGCAGCTCAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [65.0-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //