Array 1 49528-49800 **** Predicted by CRISPRDetect 2.4 *** >NZ_MUBK01000011.1 Xenorhabdus beddingii strain DSM 4764 Xbed_11, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 49528 29 100.0 32 ............................. GAAAGGATGGGGAGCTATATTTATAGACCAAA 49589 29 100.0 32 ............................. CATCAAATGCTATCGCCCCGTTACAGTACGCC 49650 29 100.0 32 ............................. CCACGCCGGAAGAAATGGATCGCTATTGGGCG 49711 29 100.0 32 ............................. ATACCAGAAAGGGGCATGGACATTGTAAGACG 49772 29 93.1 0 ..............T.............C | ========== ====== ====== ====== ============================= ================================ ================== 5 29 98.6 32 GTGTTCCCCGTAGGCACGGGGATAAACCG # Left flank : CATCAAAATTGTGACAGAAAACGGGGAGGTCTTCTTGTTTGGTATCGTAACTAAACAAGAAGGGGCAGCCGCAGCGAAAATAGCCAGTGAAACCAGCGGCGTCCAACGTGTGACAACGGCATTCACTTACCTCAATTAAGATTCGTCAACTAAGATCTTTCAACCACAGTCTACAAGCGGCACAAATCACTGTGCCGCTTTTTTATTTGTTTCCCGTTTTTATCGTATCCAATGCCGATAGCGATATCACCCTTTATCGGTATTTTTGTTCTTTTTTCGGTTGTTTTTTTCGACAGCATCATTATTTCATAGAATTTAGCTCTGTACTTACGGGGATCTCAGTAGCGTGTCGTTTTTAAAAAAACGATGAAATTTGATCGAATTTACAGAGAGTAAACAGGAAAAAACAGAACAGTGGATTTGACTATTTTATAAGCTAAAAAAATGGTGGAATTATTCCACTCTAAAAAGATATTATAAAACAGACGGATATAATTAGA # Right flank : CAAATAATATCAGGGCAGGAAAAGGCAGTTTATGTAACGTTGAGTGCGTAACAGCGATATGTATTTCGTAGCTTTCACCCTCTTGATCTATACTATTCCCCCTTTTGTTACCTATAAAAGACCATGGAACGCTTTATCGAAAACACTATGTATGCCTCGCGCTGGCTACTTGCACCGGTTTATTTCGGTTTATCATTGGCGCTATTTGCTCTTGCGGTTAAATTCTTTCAGGAAATCATGCATATCCTGCCGCATATTTTTTCCGTTGCAGAATCAGATTTAATCCTGACACTGCTTTCCCTGATTGATATGGCTCTGGTGGGTGGGTTACTGGTGATGGTGATGTTTTCAGGCTATGAAAACTTTGTCTCAAGCCTGGATATCCACGAAAGCAAGGAGAAACTGAGTTGGCTGGGGAAGATGGATGCCACTTCGCTCAAAAATAAAGTTGCAGCCTCAATTGTGGCTATCTCTTCCATTCACCTGCTGCGCATCTTTAT # Questionable array : NO Score: 5.99 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGTAGGCACGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGTATGCACGGGGATAAACCG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-10.30,-9.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [75.0-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 80696-79874 **** Predicted by CRISPRDetect 2.4 *** >NZ_MUBK01000011.1 Xenorhabdus beddingii strain DSM 4764 Xbed_11, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ============================================================================================================================================================ ================== 80695 28 72.4 32 ..TA........GG........-.C..AT ATTGATAACAACTAGCAGAGAAAATAACAACG 80635 28 79.3 156 ..T..........TC.......-.C...T TAGCCATATCTGCCAAAGGCAGTGAGTGATAGTACAGTGTAGCAAATCACTATAAGCACGTCTCCATTATGCCTATGGTTTAGCCTCATAAGCGAAAAAAATGGTAGAATTATTCCCCTCTAAAAAGATTTTATAAAACAGACGGATAAAATTAGA A [80631] 80450 29 100.0 32 ............................. GTCAACCGCTGGCATTCCCCAGACAGGGAATA 80389 29 100.0 32 ............................. ACCCCAGTCATATTTTCCCTGACGTTAAACAT 80328 29 100.0 32 ............................. TGTTATCTGAGGCCGTCAGTGGTGCTGTTTCG 80267 29 100.0 32 ............................. AAAAAATGCTCTTTGTTATGGGACTGGCAGAA 80206 29 100.0 31 ............................. GAAAGGAGGTAGTAAATGGCTAACCTGAACC 80146 29 100.0 32 ............................. TCGTTTTTAGAAAAGTAAAAGGAAATACGTTT 80085 29 100.0 32 ............................. CGTCTGTCACGGCGCAAGATTCACTGCGCTGA 80024 29 100.0 32 ............................. AATTGGTTTAAACGATGCAGAAACAGCCAGAA 79963 29 100.0 32 ............................. CATCGCTTGGTATCCACAGGACAGAGACACAT 79902 29 86.2 0 .........................GTTA | ========== ====== ====== ====== ============================= ============================================================================================================================================================ ================== 12 29 94.8 43 GTGTTCCCCGTACCTACGGGGATAAACCG # Left flank : ATTATGATATGGAACCTCGATCACATTTAGATTTATGTGGGGAAATAATGGTGATAATTCCGTAGTGCCATAATTTAAATTTTGATAGTTACCTTTATGGTGGCCTGTAATAGATCCTGACCGGTTTTTTGTGGCGGTGTTTTTTTCTGATGTTGAGTTTTTCCTGGGGAATGGTTTTTCTTTGCAGCCAACGCATTTTTTCGCCAGTCCGATAGGGTACTTGTGGGGATTCCTAGCGTTTTAGATAGGGAAGAGACGCTGACATTATGTGGAGGCAACATTTTTTCTTGGATGGCACGTTTGAATTCGGCTGGATAGCGTGTCATGAGTGATCCCCATAAAAATTTTTCTGTTTGATTATTGTAATAAACATTAGCAGGCATTTGTGTAAAGTCAAATTTCAACTGAAAAAGAAAATAACAACTTAAGAAAAATAATATATTAAAAATTATCAACTGGTTAAGTTATTGTGGTATACAAATTTCTTGTCTAAGGAAGTA # Right flank : TTATTTTAGTTGGTAATCATTGTGTAAAAAAGCCAATAGAAATAAAGACCATCCAAGATAATGCAATGGTTAATAACTTGGTGGTTTTAATTAATTTGAGTATTTTAACGGTGAAATATGATAACGGAAATGCAATAGCCAGCAGCACGGCTGGGGTATTTTACTAGACGGTTGGTAATATCTTGTCTAATCTTTATTTATCCATCGGTCATTTGATTAATTATGTATTTAATAAGTTATTTAATATTTTTTCTTATTGACCATATTCTCTGACAGGATGGAGTGCCAGCAGGGGCTGTTGCGCTTCAGCTCTGGGTTGAACAAATAACCTTTGCTTTTTGATGCAGAATAAGGTAGAGATCTTGCAAAATTCTATCGATTTAAGAGGAGTAAAAATGATGTTATTTTTTACGGTAGTGATTCCATCTATAATTGCATTTTGGGCATGTCATTATTGTGCTGATGATAATGATCACATGAAGAACAAAAATAAATAAATA # Questionable array : NO Score: 4.92 # Score Detail : 1:0, 2:3, 3:0, 4:0.74, 5:0, 6:0.25, 7:-1.07, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGTACCTACGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [6,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGTACCTACGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-9.70,-10.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [4-15] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [73.3-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,4.87 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 90568-90841 **** Predicted by CRISPRDetect 2.4 *** >NZ_MUBK01000011.1 Xenorhabdus beddingii strain DSM 4764 Xbed_11, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 90568 29 100.0 32 ............................. GTATATTTCTTAGGAACATTCCTCATGGATTA 90629 29 100.0 32 ............................. TTGTCGCCCGAATTGTCTCATTCCACGTTCCC 90690 29 100.0 32 ............................. TCAGGGCTAAAAGCAGCGCCGGCGACAAAGGC 90751 29 100.0 33 ............................. TTACTTGCTGTAGATTGGGAATGATCAGCATCC 90813 29 82.8 0 ....C.......CC...........C..C | ========== ====== ====== ====== ============================= ================================= ================== 5 29 96.6 32 GTGTTCCCCGTAGGTACGGGGATAAACCG # Left flank : CATTAATTGAAGACGTACTCGCAGCAGGCGAAATATCCCCACCGCCGCCACCCGCTGATGCACAACCCCCTGCCATTCCCGAACCCATCTCCATCGGTGATATCGGGCACAGGAGCCAATAAATATGAGTATGACGGTTGTCGTGACAGAAGCCGTTCCCCCTCGTTTACGGGGACGTTTGGCTATTTGGTTGCTGGAGATACGCGCCGGCGTTTATGTCGGGGATATCTCGCATAAAATCAGGGAAATGATTTGGGAGCAAATCACGGAACTCACCGAAGATGGCAATGCAGTTATGGCATGGCAGACCAACACTGAATCTGGATTTGATTTCCAAACCTTTGGTGAAAACAGAAGGGAGCCGATAGATTTTGATGGCCTTCGTTTAGTGAAATTTAAACCACTTTCTGAGGATTAATTTGGGGAATTAAAAGGCGCTAAAAAATGGTAGAATTTTTTCACTCTAAAAATAGGTTATAAAACAGAGGGATAAAATTAGA # Right flank : CTATCTAAACGAACGAATATTTTAAATTTTGCGATATCCCGCCTACCAGCATAATTCGTTAATGATTGTCAAAAATACCTATGATAATCTACGCCGCTCCCGCTATCAATTGTTTGTTTTATAGACAATTAAATATAAAAACAGGAAGCTGTTTACTTATGAACTTAACTAACACCAGCAAATTGTTAGCCGCTACTCTGTGTCTTGCGACCTCGTATAGCCATGCAGAGAGTGAGCGTCCACTTTTCTCATTAACCATGTCAGAATCTGGCGTTCCGCAAACAAATAGTGACGGTAGTTTATCCCGTACTACCACGTCTGAATCTCGTATTCTGCCCATTTGGGGGGATGCCGCACGAGCAAAAGGCTATGACCTGCCTGAACCATTTGGTGCGAGTTATAGTTATATGAATATGCGTCAGAATATTGTCGTGGATAGCATTAAATTCAAATTCACTAATCCAAAGTTTCACCCTTGGGAAAAAGGGACTGTTGTTAAT # Questionable array : NO Score: 5.89 # Score Detail : 1:0, 2:3, 3:0, 4:0.83, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGTAGGTACGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [6,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGTAGGTACGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-10.30,-9.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [76.7-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //