Array 1 2869511-2870438 **** Predicted by CRISPRDetect 2.4 *** >NZ_KQ759758.1 Enterobacter hormaechei strain ST3 Scaffold1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 2869511 28 100.0 32 ............................ GCAAATGTAGTGGTAACGAACCCGCGCCCAAT 2869571 28 100.0 32 ............................ CGTATCGGCAAAACCTACGGAGCCGCACATGA 2869631 28 100.0 32 ............................ GATCCCCTCTGGTACGGTGGCGCGGGGTAAGT 2869691 28 100.0 32 ............................ TTGTAGCCCATCCTACGCTTCACCTGGTCGCT 2869751 28 100.0 32 ............................ TCAGCCAGCGCGAAGCCAACCGCAGATGATAT 2869811 28 100.0 33 ............................ TGCTGCCGCATCACAGACAACCTCAGGTAAGAA 2869872 28 100.0 32 ............................ GGCTCGGATATCGATTTTTCTGGCATCTACAA 2869932 28 100.0 31 ............................ CATTCAGACTGTCCGCTAATTTTCGCCTTTT 2869991 28 100.0 32 ............................ TGCAAAAGCTCCAGAACGCCATGCGAGAACTG 2870051 28 100.0 32 ............................ ACTGGATTCATCGTTCAACTGCTGGCGTGGGA 2870111 28 100.0 32 ............................ GTTTTAACTTTTCCTGGCGCTTTGTGAGCTGG 2870171 28 96.4 32 ............G............... AGTCTCGTTCCATAAATCATCCACTCTTTTAA 2870231 28 92.9 32 ............G.............T. GTTGGCCACGGCAACCTGACCGAAACCGGCAT 2870291 28 100.0 32 ............................ ACGAACGCTTAACATGTTCCATGCCCGCTGGC 2870351 28 100.0 32 ............................ ATTTGTCTTGCTGGATGTTAGTTACTGAGCAC 2870411 28 75.0 0 ......C...........T..A..CTCC | ========== ====== ====== ====== ============================ ================================= ================== 16 28 97.8 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : TCCCGCAAACGCAGCCCGTTTGCCGTTGTCTCGGTGCTTATCTGGACGTAGTCAAAACCGAACTCGCAGAATCAATGAGTGATTTCCGGGTGGTTGAATTTGACGACGAGACGGAACGGCTGAAGGAAAAAGAGTGGCTTCTGGAGGATACCGAAACCAAATGCGATTACTGCCGGGCATTAAACCACGTGCTGCTGGTGTCGCATTTTGACCGCGAGATGCTGCCCCATCTGACAGGATTGCTGCATGACATTACACATTCGATGGCGGCAGATGTGGCTGCACCTGAATGTGGAAAGCCTGTAGTTCATATCATTAATTAAGTTTAGTCTCGTGCGTCGGGGAAGGGACTCCGGCGCGGTATGGCGAAACCCTTTTTTCGAGTAGTTCTTTAAGTTATTGATTTTTATTGTGCGAATAAAGGCCGCAGAAAAAAGGGTTTGAGGTAGATATGTTGATTATTTTCTTTTCGAACAATAAGATGGCGAAGATTTCTTCCA # Right flank : CCCAAACATTCACTCCAACTATTTTAAAATCCACAATCATCACCACAATCCTCGTTGTATTTTTAATAAACTCAATACTCATTCATCCGACAACCATATTCCCTCACATATATTATTCATAAAAATAATACATTAAATATGTCAGAGATTTTTTATCTCGACACTCCGATAATTATTATTCATTTGATACGCGTCACATTTGTCTTCATCTTATCTCCGCTAACATACCCCGCATTCAACACATTGAAATAAAAAGCACTTGCTATGCCAGCGAACAGCATTACCCCATCCGACTTAAAAACCATTCTTCATTCAAAACGTGCCAATATCTATTACCTGGAGAAATGTCGTATTCAGGTAAATGGTGGACGCGTTGAATATGTCACTCAGGAAGGTAAAGAGTCTTTTTACTGGAATATTCCCATCGCTAATACGACGGCGGTAATGTTGGGAATGGGAACATCCGTTACGCAAATGGCGATGCGGGAGTTCGCGCGAGC # Questionable array : NO Score: 6.15 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 2874453-2874961 **** Predicted by CRISPRDetect 2.4 *** >NZ_KQ759758.1 Enterobacter hormaechei strain ST3 Scaffold1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 2874453 28 100.0 33 ............................ ATATTTGGCATTCATTTCTCTGTCCGGCTGGAT 2874514 28 100.0 32 ............................ ATAATGAATGGGATAGTCTGTTGACCTGTAGG 2874574 28 100.0 32 ............................ TTCATGGGATGCTGAAGTCCGTAGTCGTCTTG 2874634 28 100.0 32 ............................ AATTATAACCGACCTTAACGCAACGCTGCGCA 2874694 28 100.0 32 ............................ ATGCTGAGTGACGCATCCTTGCAGCTGCGAAT 2874754 28 100.0 32 ............................ AACAGCGACAGCGACTATGCCGTTAGGGCAAA 2874814 28 100.0 32 ............................ ATCGGCTTTGCTCATAAGCTTGTTGATGAAGC 2874874 28 100.0 32 ............................ GGTTACCGGGCGGCCGCGCGTCTGAATCATCC 2874934 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 9 28 100.0 32 GTGCACTGCCGTACAGGCAGCTTAGAAA # Left flank : ACGCGCCACACGTTCGCTCTCGTCGGGCGTCAGCGTCCGGCCCGTACTTTTGCGGCGGGCAACGTTACGCTCGTTAATTCCCGTGACGCGTAAAATCTCCGCTTTCGACATGTCCGTCCACTCGTGAATATTGTCGAGGACGCTGACGGGTAATCCTTGATTGAGATATTCAATCAGCCGCATGCCTCTGCTTGCAGGTAAACCGGCGTAGCGCCACAGCGTGTTATCAGCCGGCCTTTGCGCAGGAACCCATGTTCTCATGATACCTCCTGAGTGATGTCATTTGTCATGAGTAAGTATAGCCATTTGTCAGGGGGTATGGAACGGGTGTTTTTTGTTCAGGGTGGGGTAAAAGAAGGATGGGAGTTGATCCTAATTTTTGACCAAAATGTAATGCATTGATTTTTCGGTAAAATATCCTGTAGCGCAAAAAAAGGGTTTGAGCAGAGATTTTAGCTTTTTTTGTATGAAAATCATGATGGTGGAGAGATATTATTTCA # Right flank : ATCATCGAGTGTAAGGCTGTGTGATTTTATTGTGTGCACCACCGCACAACCAACACTAAAGCCGAAACAAAACCCAACCAATCGTTCAAATAATCGACTGTACTAACAAAAAATAAGGCCGGGAATATCCCGGCCTTATTTAATATTCATCTGCCATTACAGGCGAAAACAATTAGCGACTACGGAAGACAATGCGGCCTTTGCTCAGGTCGTACGGGGTCAGTTCAACAGTCACTTTGTCGCCCGTCAAAATGCGGATATAGTTTTTGCGCATTTTACCGGAGATGTGCGCAGTTACCACGTGACCGTTTTCCAGTTCTACGCGAAACATGGTATTAGGCAACGTATCAAGTACGGTACCCTGCATTTCAATATTGTCTTCTTTGGCCATCTAATCCTCTGGGGTATCACTACCAAGTTTTGAACCGGCAAGATAATGCCGAAATTCCTCAATTAAGTAAAGAATTGCGCGTTTAAAACGCAGCAAAACAGTCTCAGCG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [70.0-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //