Array 1 186662-183701 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAIQEA010000003.1 Salmonella enterica strain F2-24 contig00003, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 186661 29 100.0 32 ............................. CCCCACAAATCACTGGTCGATTTCGTCGCACG 186600 29 100.0 32 ............................. GTTGCGACTAAACCGGACCAGCGCCCGCCCAC 186539 29 100.0 32 ............................. CCAGTGCTCGCTTGCTTCTACCCGTCCCGATC 186478 29 100.0 32 ............................. GCGGTTTTATTCGGCAGGGCATTGAATTTAAT 186417 29 100.0 32 ............................. AATTATCTATTTTTCTGGCCCGTTTTCAATGC 186356 29 100.0 32 ............................. CCCGCGTTTTGCGTCAGCATATAGCCAATATG 186295 29 100.0 32 ............................. GCTTTGCATACGTCACTCATAGACAAATCACG 186234 29 100.0 32 ............................. CGATTCTGGTAACGTCGCTGTACTGCCTGACA 186173 29 100.0 32 ............................. GGCGCATGAAACAACCGGCGGGGATCTCTATT 186112 29 100.0 32 ............................. ACAGCGTTAAAATGACGCCCGACGTTGTGGTG 186051 29 100.0 32 ............................. AGGGCTAACACATCACCATTATTACCAAATTC 185990 29 100.0 32 ............................. GACATTGCCCGCTGGGATGCGCGGCAACTGGA 185929 29 100.0 32 ............................. AATTGCCTTTGCTGCCCGGCTCTTCTACGGTC 185868 29 100.0 32 ............................. AGATGAATAACGCGATTTACGAGGTTACGTAT 185807 29 100.0 32 ............................. ATTAAATACCTGGAAAAATACCCCAAAGGGGC 185746 29 100.0 32 ............................. AAAAATAGCGATAACGCGCCAGATCGTGAGGT 185685 29 100.0 32 ............................. TCATTTTTTATTTTCACGTTCGGCTTTCTCAC 185624 29 100.0 32 ............................. TTAAATCGACCTACCTGTTAAACGCGTCAATG 185563 29 100.0 32 ............................. TTCGCAGTAACAGTGTCGTTTTTATAACCGAC 185502 29 100.0 32 ............................. GCGGCATTAATGCGGGATTGTGTTTTCTGAGC 185441 29 100.0 32 ............................. ACGGCAGAAACAATGGCGTCAGTAGCTCAGGA 185380 29 100.0 33 ............................. CAGTCAATGAGACTTTTCACACTGATAATGTTG 185318 29 100.0 32 ............................. CCCCTATTCCTGATCATCGCGCATTTGGCGGC 185257 29 100.0 32 ............................. ACCACCACGTAGCCGTAGGCTGTCGCCAGTTG 185196 29 100.0 32 ............................. GAATTACGTTGCGAACAGCGCGGCGAGAGACG 185135 29 100.0 32 ............................. CGGATTGCATTCAATAAACATGTAAATAGGAA 185074 29 100.0 32 ............................. TTACCGACACCTGCGTGGCTAGCGTTTTTTCG 185013 29 100.0 32 ............................. CCAAAAACATTGAGTGCTTCTTGTACGTTCAT 184952 29 100.0 32 ............................. CCTGCGTGCGTGCAACGGGTAACTAAGGGGAA 184891 29 100.0 32 ............................. CATTGGGTAATTATATTCGCAATTTAAGCGAT 184830 29 100.0 32 ............................. ATATTTTAAACCAGACTGACGCGATGATCGTT 184769 29 100.0 32 ............................. CCATCAAAGCTGCTGCGCTGGTGGCATAACCC 184708 29 100.0 32 ............................. ACTACGCGGCATGGCTGAACCCCGGATTCAAG 184647 29 100.0 32 ............................. CCCCAGGCGGTGCCTACGTCGGATGAAGAGCC 184586 29 100.0 32 ............................. CCGTGGAAAGAACCAGAGCGTTGGTTATTGGT 184525 29 100.0 32 ............................. CTCCCAAACCTCTACAGCGCTACCAACAGGAA 184464 29 100.0 33 ............................. GATCGCCCACCGGCATAAACGCGATAGCCGCGT 184402 29 100.0 32 ............................. CTGTTCCCGATCGCTTTATATCGGGGGCCATC 184341 29 100.0 32 ............................. TACCAGACGGACAGCTACGATACCGCTGACGA 184280 29 100.0 32 ............................. GCAGTACTGGCTCTAAATTTAAAACTGGTCAG 184219 29 100.0 32 ............................. TGGCCCACGTGCGCGGAGACGGCAACCGGTTC 184158 29 100.0 32 ............................. TCTCGACGCCAGATTTAATATTAATTCCCGCA 184097 29 100.0 32 ............................. CAGACGTAGAGATTGAGAACACAAATGACTCA 184036 29 100.0 32 ............................. GATTGCTCAGATTGGGAATTTGACCAGCGACC 183975 29 96.6 32 ........................G.... ACTATTTTTCAGGTGAATTACAGCGCCGCAAC 183914 29 100.0 33 ............................. GCGAAAAATTGACGCTATCAGGGAGAGCGCCGG 183852 29 100.0 32 ............................. CCGGAAAACTATCTCTATCGCAGGCTGGATAT 183791 29 100.0 32 ............................. GCCGTGAACGCGTCGCCCGCTTTTTTGTAGCA 183730 29 96.6 0 ............T................ | A [183703] ========== ====== ====== ====== ============================= ================================= ================== 49 29 99.9 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCCCTGGGGGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTAGTCACGGAAAACGTACCGCCGCGCCTGCGGGGTCGCCTTGCCGTCTGGTTACTGGAGATTCGTGCCGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTTAGATTAGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATTTTACCGTTGGTAGTTTGTTAGGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTTTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 204294-202921 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAIQEA010000003.1 Salmonella enterica strain F2-24 contig00003, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 204293 29 100.0 32 ............................. ATTAAATTTTCGGGAACGGCGACGGAATCCGG 204232 29 100.0 32 ............................. AAAATCATCATGGCCAGCGCTGGCGCGCTCGC 204171 29 100.0 32 ............................. AATGATTATATCGATCGACCAATCGATGAGCA 204110 29 100.0 32 ............................. TCGGTGAGACAAATCATTCCAGATTGATCAAC 204049 29 100.0 32 ............................. AATTTAAACAGTAATTTAAAATTGTTAGCGTC 203988 29 100.0 33 ............................. GCAACGGCGGCGCGGCATTCTGCGGTGCAAATA 203926 29 100.0 32 ............................. GATTCCAGCGCGCCAAAATCAGGAGATTCCGT 203865 29 100.0 32 ............................. CCCCCGGCATTCGGCTATGCCTATTCATATGT 203804 29 100.0 32 ............................. TGGTCACTACCGTCTATCTCTTCCGGATACAC 203743 29 100.0 32 ............................. AACCCGGCAGCAGGGGTAATTCATACAGCATA 203682 29 100.0 32 ............................. ATTTGGTGAAGGGCGCATTTGAGGACCCGTTA 203621 29 96.6 32 ............T................ CTTGCAGCCGAATACGGTATAGAGTGGGACGG 203560 29 100.0 33 ............................. GCCTGTCCTGCGTCAGCGTTACCAGCTTCATGC 203498 29 100.0 32 ............................. AAATTCAATTACGACTCGCTGCCTGACGGGGT 203437 29 100.0 32 ............................. ATTTTGAGCGGACGGGAGCTGGCCGAATGACC 203376 29 100.0 33 ............................. CGGTTTTTACTTTTGCTGCATTCCGCCTCCCGG 203314 29 100.0 32 ............................. TCCTGGCAGGAATACAAACTTGTGATGCTGCG 203253 29 96.6 32 .............T............... ACCGCAGGCGCAGCGGCAATATTCTGGTTCAA 203192 29 96.6 32 .............T............... TCGTTTCTGGGAGCGGGTCTTTCCAGTATTGC 203131 29 96.6 32 ...........C................. CAGGGGAAGAGGTTCCGGCCCAGCAGTTCTAT 203070 29 100.0 32 ............................. CTGCTGGGTCGTGTTTGACTCAACGCTCCCCA 203009 29 100.0 32 ............................. ATTTTAGAATTACGCATTGAGCCGATGATGTA 202948 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================= ================== 23 29 98.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGATAAAAAGTAGTTTATAAACAATGATATCCGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGATTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTCGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCATGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCACTGCCGATTGGC # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //