Array 1 171799-172375 		**** Predicted by CRISPRDetect 2.4 *** 
>NZ_MLBL02000004.1 Corynebacterium diphtheriae strain c488 contig000004, whole genome shotgun sequence		Array_Orientation: Forward

  Position	Repeat	   %id	Spacer	Repeat_Sequence              	Spacer_Sequence                 	Insertion/Deletion
==========	======	======	======	=============================	================================	==================
    171799	    29	 100.0	    32	.............................	TCACCGACGACCCTATGAGCGACACCGACAAG	
    171860	    29	 100.0	    32	.............................	CCGCCGAGGTCTCAGAGCTGAATGTTGACGTT	
    171921	    29	  96.6	    32	............................G	GGTTTGGGTTCCGCTTCACATTCACCTTGCGA	
    171982	    29	  96.6	    32	............................G	ATTTGCCCCCTACTGACGTAACCGCTGGTAGG	
    172043	    28	  96.6	    32	.....-.......................	GACGAAAAACACATCAAGGGAATGGACAAATA	
    172103	    29	 100.0	    32	.............................	ACACAGAATGGCTCCACATGATCGCGGGAGAC	
    172164	    29	  96.6	    32	............................G	CTGCCAGGGCGACAAGGGGCATATCTGTTTCA	
    172225	    29	 100.0	    32	.............................	TCAACATCAACTGCACAGAAACCGGCATCAAC	
    172286	    29	  96.6	    32	............................G	TGCGCTGCTTCGACGCCTCGAGCCATTCGGAG	
    172347	    29	  93.1	     0	...........GT................	|                               	
==========	======	======	======	=============================	================================	==================
        10	    29	  97.6	    32	GTTTTCCCCGCACCAGCGGGGATGAGCCC	                                	       

# Left flank :   CTTACTTGGAAAGAAGCTGAGGCATTGGCTGGAAACACAGTGCGCCTGCCAGCCCGAATGACACGTAGAGATTCGGATTTTAATGCCGTTATTGATTCGCTCGAAGCACAAACACCACCAGAATGGCAACGATCCGGTTTGCTTAAAGGCCAAGTTGCGTTGCTTTTCGACGAAAGAGGAGAGGCTCGTGTAGGTCGATTCCTAGTGCGTTATACCAATGAACGTGGATTAGAGGTGGAAGTCTGCCCAAAGGAAGACGCATAAAAGGAAACCCCGCTGGTGCGGGGAAGTATGCCTATACAAATCTTGTAGAGATATTAAAAAGGCTCATCCCTGATCGCAGGGAACAATGCCAGCCTATGGCTAGAAGAAAGGACTAAGCAAATTTGGGTGAATGGCTGATCCTAAAACAGTAGAAATAAAGATGAAGCAGAAAAATTGCTGAAACAAAGTTATATGTAATAAGCTCTAACTGGCTCTAAACGTGCAGCTTGATAAGT
# Right flank :  CAGGGACTTTGAGAACTGGACCGCCGTGATTCCCTGCACTAGCAGGGTGGATGAATCTTTGTTGAAGAACGGGTTTTGGAATCTGTGTTTTTCATTCAGAGAAATCAGTAAATGATGGCTCTACTAAAAAATTTTGAAAAAACTAACTTTTAATATCTATAGAGTGTATTCTGTGGAAAAGTGCTTCCTAAGTTGGGAGTTTTAAAACAATCAGGAAGGAGTTGGTGATGGCTTCGTTACTGGAGATCCGCTGGATTCTGGCTCTTGATACTCAAGGTAACCAGATTTCAGTTGGAATACGAGATATTTTCGCGGGGGAGGTGCAGGTTGTCTATATTCAGGGGGAGTCCCCGGCTCAAGACTATGCTGTGATGCGGCTTTTGCTGGCTATTTTCTGGCGTGCCCATTCCATGGATATCGACATGGACGTGGAACCTTTTGATTTTCTTGAATGGTTCAACAAGATGAGACGTCGTCTTGCTCGAAAAGGGAAAGATCAG

# Questionable array : NO	 Score: 5.83
# 	Score Detail : 1:0, 2:3, 3:0, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.69,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     GTTTTCCCCGCACCAGCGGGGATGAGCCC
# Alternate repeat :   NA

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         NA Score: 0/4.5
# 	A,T distribution in repeat prediction:     R [4,5] Score: 0.37/0.37
# 	Reference repeat match prediction:         F [matched GTGCTCCCCGCGCCAGCGGGGATGAGCCG with 96% identity] Score: 4.5/4.5
# 	Secondary Structural analysis prediction:  NA [-12.70,-12.70] Score: 0/0.37
# 	Array degeneracy analysis prediction:      F [0-2] Score: 0.41/0.41
# 	AT richness analysis in flanks prediction: F [63.3-46.7]%AT Score: 0.27/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         F [5.18,0.37   Confidence: HIGH] 

# Array family : I-E [Matched known repeat from this family],   
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