Array 1 27142-28430 **** Predicted by CRISPRDetect 2.4 *** >NZ_NLBB01000052.1 Pseudomonas aeruginosa strain Env_32 contig-2000046, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 27142 28 100.0 33 ............................ TCTAGGACCGCCTCGGTCACGCCGGCCGTACGA 27203 28 100.0 32 ............................ AGGCGCTGGACTCGCCCCCTGGGCGGCTGCGC 27263 28 100.0 32 ............................ GATCGACCTGGTGCATACGCTCCGCCTCGATG 27323 28 100.0 32 ............................ TGATATCCAGCTGCTCCAGGAACCGCTGGCGG 27383 28 100.0 32 ............................ TCTGCGGACGCCAGGCGCCCGGCCAACACGCC 27443 28 100.0 32 ............................ ATCACGAAAACGCGGCGGCCGTACCGGTTGCC 27503 28 100.0 32 ............................ ACATGCCGATCCTGCTTAAGCGACGGGATAAT 27563 28 100.0 32 ............................ AGCACCAGGACCGAACCAGGCGGCGCAAAGTC 27623 28 100.0 32 ............................ CGTCCTGGACTACGAGCACCAGACCCTAAAGA 27683 28 100.0 32 ............................ TCGACAAATATCCTGCAAAGCGAATCAGCCGT 27743 28 100.0 32 ............................ ACAACAGCCGTTCGTCGGAGTTGACCATGCGT 27803 28 100.0 32 ............................ TCGGATTGGAGCGAGTTGGAGAAGCTACAGAC 27863 28 100.0 32 ............................ TCTCCGCCCCAGCTATTGCCGGGGAGGGCATG 27923 28 100.0 32 ............................ ATAAAGCACTTCCACGCCGCGCTTGATGCTCT 27983 28 100.0 32 ............................ ACCGCCGGCCAGCACACCCCTTGGTCGTTCGC 28043 28 100.0 32 ............................ TCTTTGCAATCTACAACAACCCTGATCGACGA 28103 28 100.0 32 ............................ AATATGAACATTAGGTACATATCAGGCGGGAA 28163 28 100.0 32 ............................ TTCACGTTGGGCGTAGGACAGCGCGTCCTGCC 28223 28 100.0 32 ............................ AACAGCATGGCGTCCACCCGTACCGCCCTCAT 28283 28 100.0 32 ............................ TACCGTGGCGACGTTGCAACCCGCTGGTCCGA 28343 28 100.0 32 ............................ TCCAGTAAGGCCAGCTCGGTCACGCGCATGCC 28403 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 22 28 100.0 32 GTTCACTGCCGTGTAGGCAGCTAAGAAA # Left flank : ACATGTGTCCGCGTAGCGCCACCTTGTACGTGGACACCCATGCACTCCCCACGCACTTGTTCGACAACGCGAAAGTGCGCTTGAGGTCGGCGATCAACATCCTGGCCATGACCCGTTTGCTCGATGAGAAAGAAGAGCCCGGCGGCACCCTGGCCTACATCAACGGTGCGTTGCTGTCGCTGCTCAGCGATGCCTTGTCCGAAATCGAGGCGGGCCACCCGAGCCTGTAGCGCCGCTCCCCGGCGCGACGCCCCCGGCCTGGCCGGGGGCTTTGTGGCATCGCCCATCACAGGACCTTTCGCGCCCGAACGGCACGCTTGATCGCCGTCCCGGTCCTCGCGAAACGGCCGCCAATTGCCCGAAGCTTCCGACCCTTTTTTCGGACGATTTCTTACGCCCTTATAAATCAGTAAGTTACGAGACCTCGAAAAAAGAGGGTTTCTGGCGGAAAAAACTCGGTATTTCTTTTTCCTTCAAATGGTTATAGGTTTTCGGAGCTA # Right flank : ACTCGAACCCACCTCGGCCACAACAGCCGCCGGGTTCGCTGCCGTCTAGGCAGAACCACCCTCCCCATCCCACTACCAAACATCCGAATATAAAGTTCCTACCCCGCCCGCCAGCCTCGCCCGTCCACGACAATGTGCCTCGCTTGGAAGCTCACGCTCCTCATACAGACGAAAACGGGGTAGCGGCAATCGGCCATATCCGCTAAACAGTTGCCTTGGCGCAGAATTCGATAGATCCGATAGGGACAGGCCACGGTCAACATGGACGACATTTCTCCCAGCGAACTGAAGACGATCCTTCACTCCAAGCGTGCCAACCTGTACTACCTGCAACACTGCCGGGTACTGGTCAACGGCGGGCGGGTCGAGTACGTCACCGACGAAGGCCGGCATTCGCACTACTGGAACATCCCCATCGCCAACACCACCAGCCTGTTGCTGGGCACCGGTACCTCCATTACCCAGGCAGCCATGCGCGAACTGGCCAGGGCCGGGGTATT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTGTAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTGTAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [61.7-31.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 38244-36955 **** Predicted by CRISPRDetect 2.4 *** >NZ_NLBB01000052.1 Pseudomonas aeruginosa strain Env_32 contig-2000046, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 38243 28 100.0 32 ............................ TTTGGCATACGCAGGTTCTTGCAGGGATTCGT 38183 28 100.0 33 ............................ GAGGAATGTCAGCAGCTCGCCGCCGAACGAGAT 38122 28 100.0 32 ............................ TTCCGGTCGACGGCGGCATGCTGTTCGGCGCC 38062 28 100.0 32 ............................ ATCATCAGTTCGTCGGTGGATATTCCTAGCGC 38002 28 100.0 32 ............................ GGCTTCCTTCACGCCAGCGTCGCTCTCGATCC 37942 28 100.0 32 ............................ ACGACCGCAAGACGCGGACCGATGGGGGTGCA 37882 28 100.0 32 ............................ ATAGGGCCGAATGAAGTTGATGTGCTTGCCGA 37822 28 100.0 32 ............................ GCGAGGGCGTCGACGCACGCGACCGCGGCGAA 37762 28 100.0 32 ............................ AAGAACGGCTTCAGGCTGAAGCTAGATGCCTG 37702 28 100.0 32 ............................ ACGCTCGGGCCGGCCGCCAGCGGCAGCTCGGC 37642 28 100.0 32 ............................ AGCTTCCGGGCCGATGTTGCCGACCGTGGTAT 37582 28 100.0 32 ............................ TCAACGACAAGGAGCTGCTATCCATTCTCGAC 37522 28 100.0 32 ............................ ATGGATGTCGGAACATCCCAGGTCACGGTCGT 37462 28 100.0 32 ............................ ACTTCTGCGCCTGACGCGTCGGTCATGACGAT 37402 28 100.0 32 ............................ CAGCGCAACAGGCGCATAAGTTCGTTGTAGTG 37342 28 100.0 32 ............................ TCGCTCTGCACCAGCGGCGCATTGGATCTGGT 37282 28 100.0 32 ............................ AAGCTCGCGCGGGCCTACGAGCAACACGCCAA 37222 28 100.0 32 ............................ AAAGAGGCTGCGCAGCACCGACGCACCTTCGT 37162 28 100.0 32 ............................ GACTTGAAGCCACTGCGCAGGCACGCCACCCA 37102 28 100.0 32 ............................ CTGCAGTGGAAGACCTGGGTGCGTCTCGCCCT 37042 28 92.9 32 .....................A..A... TGTCCCGAAGTTCATAAGCGGGCTTAGGGCGA 36982 28 75.0 0 T.........AC.....TC.TC...... | ========== ====== ====== ====== ============================ ================================= ================== 22 28 98.5 32 GTTCACTGCCGTATAGGCAGCTAAGAAA # Left flank : CGAAGTCGTCGAGGACGAACCAGGCCTGGTCGTCGATCAGCAGCGCGCGCAGCAATCGCTGCTGTCGGAAGAAGTAGTGCGGGGCAAGCTGGGTATGGCCGTGCATAGGAGAAATCCTTCTCTGAGCTGTCCGCTGCCTGGCTTCTGCCGGCGCGGCAGGGAGACAGGCCGCTCGTGGGTGTTGGGCCAGCAGGCTGTGGCCTGCCGGGAACCGAAGTCGCCGGCGAAAAAAGCCTACTGACAGCGCCTGTAGGACGGCAATGGCTAAGCCTTGTACGAAGTCTCCGATGGCACAAGCCCGCTGAACAGCTAGGCCGTTCTGAACATTACGCCGGCATGGAGAAAACAGGGGATGGACGCTATGCTTGGGAACCCTTTTTTTGGTGGTTTTTTAAAGCCCTTTTAGATCAGAGGGTTAGAGATCGCTGCAAAAAGAGGGTTTTTCCGGGCTTTGGCGCTGGAGCCCTTGGAGCTTGGAAGGTTGATGGGGTTTTGGTCTA # Right flank : CGGCCAGCAGCCCTGAAGTATCGATTGATGCGGTTCGCTGTCGGCCGGGGGGCACCAGTCGAAACGAAGTCCCTTTCCATGGGACTTCGTTGCGGACATGCCGATAAGGCGCTGACGGGGTTCTTCAGAACCAGGGAACGGAACCTCCTTTGCTCAACCCGTAACAGGTGAATCCTCCTTCCTCTGCCGTCGCCTGCAACGGCCCGTGGCGGATAAAGAGACGGAAGTGCTGTCCGGTGCTCTGGCTGCGTAGCGTGACGAAGGGCAGGTCCAAGGTTCTCGCGACCGTATCGGGAATGCGTTTCCGAGCCTCCTCCTCACTCAGATCGTGCCGGCGCATGAGCCGCCGCCGCAGGCGTTCCGGATTGCTTTTCGCCTGAACCCGACTGACCTGACGGTACGGTGTGGGGTGAGGCACGACTGCCGGTTCTCCGAATTGCAGATGGTCCCGCAACCCTTCCAGCCAGGGCCGGGCGAGCAGGGCACGAAGGTCGTCCGCC # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: R [matched GTTCACTGCCGTATAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [33.3-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //