Array 1 1507934-1503214 **** Predicted by CRISPRDetect 2.4 *** >NZ_CABHMM010000001.1 Bifidobacterium longum subsp. infantis isolate B.longum_ssp_infantis_5, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 1507933 29 100.0 32 ............................. CCGCCACGTTCTCCTACCCTGCTCGTCCACGG 1507872 29 100.0 32 ............................. GCTTTGGGATTTTGAGCATAGTTTTCGACCAG 1507811 29 100.0 32 ............................. CTGATGCGTTCGATGGTCTTGGATACGAGGCC 1507750 29 100.0 32 ............................. CAAATCACCGAAACGTTTTTGGGAAAGCTCAG 1507689 29 100.0 32 ............................. TTCCTCCAGCAGATGATAATACATCCCGTCAA 1507628 29 100.0 32 ............................. GATGGCGTGTGGGGCACGTTCAACATCCGCGG 1507567 29 100.0 32 ............................. AAGTGGGACACGGCGTTAGCGCCGTTCGCGGA 1507506 29 100.0 32 ............................. TATCAGCCAACGCCATCGCGTCAACCAGCATA 1507445 29 100.0 32 ............................. CGCGACCGACTACCAGCATGATTCCAGTAATT 1507384 29 100.0 32 ............................. AGCGCGCACCCGTATTCGCACAGGCACATCTC 1507323 29 100.0 32 ............................. GAGACACAATCATGGCACTCACTGACGACGAC 1507262 29 100.0 32 ............................. AAGACCCGATTGCATGGGGACAGCACGGCGAA 1507201 29 100.0 32 ............................. CCCTCTTGCCCTTGTTGTCGCCGTCGGCGATG 1507140 29 100.0 32 ............................. TACAGCGAATAATTACGTGGAAAAAGCGTCTC 1507079 29 100.0 32 ............................. TACATGCTGGATGGGGCGACCAGCCAGTTTAC 1507018 29 100.0 32 ............................. GGCCTGCCCATCGACACAGGTGAGATGCTGAA 1506957 29 96.6 32 ............................T GCTTCCACATTCAGTGCGGCGATGACCTGCGG 1506896 29 100.0 32 ............................. GCAACGGGAATCAGGCCGTCACCGATGACGAC 1506835 29 100.0 32 ............................. TGGCCCGCGCGGCCTCGGTCAACCGCATGACC 1506774 29 100.0 32 ............................. GCTTCCATCGACAATATCAAGAAGACCGCCGA 1506713 29 100.0 32 ............................. TGCCCTCAACGCCATCCGATGGTCTGGTCAAC 1506652 29 100.0 32 ............................. ACCTTCCAGCCTTCGGCAGGTTTTGGCACGTG 1506591 29 100.0 32 ............................. GCCCCAATACGGGCGTCGGAGCCTCGCCCTTC 1506530 29 100.0 32 ............................. GCACACCAAATGACTGCGAATGACACGTCAAC 1506469 29 100.0 32 ............................. GTGTTCGAATTCCATATCGAACCCGCGTCCAG 1506408 29 100.0 32 ............................. TTCCGTGCCGTCTGCGAGCTGCTGGCGTTCAA 1506347 29 100.0 32 ............................. GTGCGCACGATGGGCGCGTCCTTGTCGTAGTC 1506286 29 100.0 32 ............................. GCCTTGACGTTCGCGCCCGCGTGCACGGCCAG 1506225 29 100.0 32 ............................. GGCGCGACTTGCTATGAGATGTGCAAGACGTG 1506164 29 100.0 32 ............................. ACGTAAGGTCGTGAGGCGTCGCGCTGGCCACC 1506103 29 100.0 32 ............................. CTTATGTATCTGACTTACGACGAAGCTATCAG 1506042 29 100.0 32 ............................. GAAGCGGTCGACCAATCTCAGGCCGCGTCGAA 1505981 29 100.0 32 ............................. AGCGGAACCGTTGTTGACGGCCATGAATGTCG 1505920 29 100.0 33 ............................. AGCGGCATGTCCGATATCACCGCGACCCTGTTC 1505858 29 100.0 32 ............................. TCGGCACTCGATGTTCAGGGACTGGCGACCGT 1505797 29 100.0 32 ............................. ACGTGGGAGGGTGATGAGTTCGCTCAGGCTGT 1505736 29 100.0 32 ............................. ACGGCGCGCCCCCGCGATGGAATACGCAGACA 1505675 29 100.0 32 ............................. TACGGTTTGCAGGAGAGTTCCCGGAACCGTCC 1505614 29 100.0 32 ............................. AACGCGGACGAGATTTCCAAGGCTAAGTCGGA 1505553 29 100.0 32 ............................. ACGTTCATGGGGATGGTCGGCTGCGTGTCGGG 1505492 29 100.0 32 ............................. GCGATGGCGTTGGCTTCCGCATTCTTGCTCAG 1505431 29 100.0 32 ............................. AGCTTGCCCACACGAAACCCATCGACATCGTG 1505370 29 100.0 32 ............................. ACCTGTTTATGGGCATGTGGGGAAGCGGCGAC 1505309 29 100.0 32 ............................. GACAATCCCACCGTCAACTCCGCCCTCGGCAG 1505248 29 100.0 32 ............................. GAACCAGAGAGGAAGAATAGTGGTACAGGATT 1505187 29 100.0 32 ............................. AAGTACGGCCAGCCTGCCGTCACCCCGCAGAA 1505126 29 100.0 32 ............................. GTATCGGCCGTGTAAACAGACTGCCCGCCATG 1505065 29 100.0 32 ............................. GATGTGCTCGACAGTCTTGATAAGGAGCATGA 1505004 29 100.0 32 ............................. GACTAGTGCTAGACACGCGCACGCCCCGCCGG 1504943 29 100.0 32 ............................. AGGAAACTGGCACGGAGAACAAGTACCTCCTG 1504882 29 100.0 32 ............................. TCCGACGCGGCTTCGGCCAAATCGGACGCTTC 1504821 29 96.6 32 .................T........... ACGGCTTTGCAGGACAATACGGCCAAGCTCGA 1504760 29 100.0 32 ............................. GTATGGTTCTTCGAGTGGGCTTCGGCATACGC 1504699 29 100.0 32 ............................. GTTTTGGAATCCGATATTCCCGGCACCACCTG 1504638 29 100.0 32 ............................. TTCACGTCGAACGGGATCACGACGCTGATCTG 1504577 29 100.0 32 ............................. TACATGCTCATCGGGTTGTCGGGAAGCGCGTT 1504516 29 100.0 32 ............................. GGCAGAGTGACGGTGACGGCGGACGCGCTGGA 1504455 29 100.0 32 ............................. TCCACCGCGTTGGCCAGCTGCCAGCCCACGAG 1504394 29 100.0 32 ............................. ATGGCGATGAAGACGATCAGGGCTGTCAGGTA 1504333 29 100.0 32 ............................. GACGAGAAAGCCAATCCGTATGCGGTGGACGT 1504272 29 100.0 32 ............................. TACAGGCCGTCGGCGACGGCGCGCGTATGCCA 1504211 29 100.0 32 ............................. GACAGCGGGAACATACAGGTCTTCGACAGCGA 1504150 29 100.0 32 ............................. ACAACCGACGCGAAGAAGGCTGCCGAGAATGC 1504089 29 100.0 32 ............................. GCAACAGAAGGCACCAAATACGTCAACCCAGA 1504028 29 100.0 32 ............................. CTTTGCCACACATCCAATTGGATGTTGAGTTG 1503967 27 93.1 32 ..........--................. GTCGAGCAATCGGCCACGCACCTCGAACTGCT 1503908 29 100.0 27 ............................. AAGCGAGGATACCCCCCCAATGGCGGC 1503852 29 100.0 32 ............................. GCCGCTCAGGCGCAGCTCGGCACCTTCGCGCT 1503791 29 100.0 32 ............................. CGCAGGCAGCCTCCCCGGTACCCGTACGACGC 1503730 29 100.0 32 ............................. AATCCCAGCACATGCGAAGAAAGGAAGAAAGA 1503669 29 100.0 32 ............................. GTGCGGGCTGGCGGGCTTGGGTTGGCCGCGTA 1503608 29 100.0 32 ............................. TACTTGCGCTGCTGTCTCTCCAGATGCTCGAT 1503547 29 100.0 32 ............................. ATGGGCATGTGGTCTGTATTCGGGGCGACACC 1503486 29 93.1 32 ............T...........C.... GACGAAAACCGGGGGGCGGGTCCCGGGAACTC 1503425 29 100.0 32 ............................. GGAACAGGTGAAAACGCCGAGCTTGTATATTT 1503364 29 96.6 32 ............................A ACACGACACCAGGTCTCCATCAACCCGGAAAC 1503303 29 100.0 32 ............................. GCCTACCCATCGACACCGGCGAAATGCTCAAC 1503242 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 78 29 99.7 32 GTTTGCCCCGCACGCGCGGGGATGATCCG # Left flank : ATAGGGCAATCGAGCAAACAAGCAGAAGCATAGGGGCTCATAATGATTGTTATCGTACTTACAGTGTCCCCTCCGAAGCTGCGTGGACACTTAACGCGTTGGCTGTTTGAGATATCCCCTGGTGTCTATGTAGGCAAAGCTTCTGCTCGTGTTCGGGAGCTGCTGTGGCAGCAGATATTGGAGAATATCAGCGAAGGGCGTGCCGTCATGGTGTACTCTTCCAATAACGAACAAGGTTTGGATTTCAGAACACATGGGCAAGAATGGGAGCCAGTGGATTATGATGGATTAAAGTTGATTATGCGACCAAACTCAAGTCAAAAGCAGAAGCGTAATGGAGTTTTGAAAACCAAGAAAAAGACTGGTTGGAGTAGTGCCTCTCGATATAGGCGTTTTGGCCGATGACTGGAAGCAGGAACAATAGCACGAAGATTGGAGCCACTGTGCGAATCCAATTATTGAGGGTCCAGCGCTCAAGAGTTTTCGCATAAAATCGGACT # Right flank : TCGTTGATGGCCCCCCAGCGGCGACTCGTAGGGCGCGTTCCAGTGATCGTTGCAACATCTGATCGACCGGTAGGAGGATCGGATGGGCAGGTGGGCGTTCGAGGGTGTGGAGTACGCGACGCGTGGTGAGATGTGCGCGGCGAGGCGGCGCCGCTACGCCGAGCTGCTGGAGGCGGGCATGAACTTCACGCAGGCCGCCCGCGCGGTGGGCGTGTCCAAACGCACCGGCAAGGTGTGGCTGTTTTTAGTCAAGTCGGTGTTTCGTGTTTCGTCACTAATTTTTTTCGGTTTGGGGCTGGTGCCGTTTTGTTGGACTCATCGTTGATTCCATCACCACCAATCATGCCACAAGACCGAGCTCGCGTCGACGATCCATGATGCTCATGCCGAACTCCGTCTTGATCCGCCTGTCCCGGTACCAGACCATGTAGTCGTTGAGCATGTTGATGAACCCGTCCATCGAGACGCCCGCGAAGCTGCGCTTGTGGAAGAACTCCTGC # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGCCCCGCACGCGCGGGGATGATCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTTGCCCCGCACGCGCGGGGATGATCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [11-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [38.3-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //