Array 1 2475-302 **** Predicted by CRISPRDetect 2.4 *** >NZ_LILD02000021.1 Alkalihalobacillus halodurans strain DSM 13666 Scaffold20_1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ===================================== ================== 2474 32 100.0 35 ................................ TCAAATTTCGTTAGTTATGTATCAGGAATCGTTAA 2407 32 100.0 34 ................................ CGTTTTAATTAGATCGGTCTTTTGGAGCGCTATT 2341 32 100.0 35 ................................ GCCGGCAGTTACGACAATGGGTAGCGGTCATCGCG 2274 32 96.9 35 .G.............................. GCCGGCAGTTACGACAATGGGTAGCGGTCATCGCG 2207 32 96.9 35 .G.............................. GTTGTGGCCGTCCGATCATAACGGTAAGGAGCCGT 2140 32 100.0 35 ................................ GCCGACTGTTACGACAATGGGTGGCGGTCATCGCG 2073 32 100.0 36 ................................ TCCTCTACCTTTGGAGGAGGTGTCTGAGCTGGTTGA 2005 32 100.0 35 ................................ GTTGTGGCCGTCCGCTCAAAACGGTAAGGAGCCGT 1938 32 100.0 34 ................................ GCAGGTTATCTCCGAATCTGATTGGTTTTTCAGA 1872 32 100.0 36 ................................ TTTCGTCGCCCGTTTTTGTTCCAAGCCAAATAACTT 1804 32 96.9 35 ...........C.................... GTAACTATGGGGGGAGAATGCACTGCGTGCGACAG 1737 32 96.9 34 ...........C.................... TTTTCCTTAGCTGCTACACCAGATTGAAGAGCAC 1671 32 96.9 34 ...........C.................... CGTTAGCTTTCTTCGAGAAAGTCGAATGTTGGGG 1605 32 96.9 34 ...........C.................... ACTTTGATTTTTCGCGGTGACGCTGTTTTATACT 1539 32 96.9 34 ...........C.................... TTAGTGTACGGATTATAATCGAGCCATTCATCGA 1473 32 96.9 37 ...........C.................... TTCTAACTTTTCTTGCACCCAAGGTACGATGTACCCT 1404 32 90.6 31 ..........TC...G................ TGGATCATCGACAAAGCTAGCAAGCGCTAAC 1341 32 90.6 31 ..........TC...G................ TGGATCATCGACAAAGCTAGCAAGCGCTAAC 1278 32 90.6 36 ..........TC...G................ TTCAAAAATTACAACCTCATGAGGTGTTAAATTCAC 1210 32 100.0 35 ................................ TACACCTGCTGCTTCGCATGCTCGGTATGCTTCTA 1143 32 100.0 33 ................................ TATTCTTAACTACTACTTCGTAAGTGATGTCGT 1078 32 100.0 35 ................................ TAGCATCTCTTGGGTTTCCCATCCTGCAAGAGCCA 1011 32 100.0 36 ................................ GCCAAATGTTTTGATGTCCACGGATTCGTTTGTGAT 943 32 100.0 36 ................................ GCCAAATGTTATGATGTCCACGGATTTGTTTGTTAT 875 32 96.9 36 .......G........................ GCCAAATGTTATGATGTCCACGGATTTGTTTGTTAT 807 32 96.9 36 .......G........................ GCCAAATGTTTTGATGTCCACGGATTCGTTTGTGAT 739 32 100.0 36 ................................ CTCGCGAATTACGGAGAGCAATTGACGCCCGAACAC 671 32 100.0 36 ................................ ACCTTCCTCTACACCCGCAAAGCTGCGCACAGCTTT 603 32 100.0 36 ................................ GCCAAATGTTTTGATGTCCACGGATTTGTTTGTTAT 535 32 96.9 36 .......G........................ CTCGCGCACTACGGAGAGCAATTGACGCCCGAACCC 467 32 100.0 36 ................................ ACCTTCCTCTACACCCGCAAAGCTGCGCACAGCTTT 399 32 93.8 34 ...............G...............C AACCCCCTCTGGAACAATAGTTTTTCGTTGCTGC 333 32 90.6 0 ..........TC...G................ | ========== ====== ====== ====== ================================ ===================================== ================== 33 32 97.6 35 GTCGCACTCTATATGAGTGCGTGGATTGAAAT # Left flank : AAGACGTGGCCGCAGCATGCTCATTCACTTACCCAGAAACGGATGATCGAAACATGACCGATTATTTGCATCGCGTAAAAAATTTGTCAGCCGATGCAACGGATATGTAGGAACAACCGCACCCTGCGGATAAGCGGGGTGCCTCTTATGACAAATGGAAGGAATGGAGACGGAGAAATGAGCCTCTTCCTACTCGCCCTAAGTCGCTGGGATGAGCCAAGGACGTTGTGATGAGGAATAAAAGAAAAGGGAGGGTGCTCTAGCAAACGGTTAACAAACCGTTAGTCTTTCGTGGTATCCTTATGTTAGGTTGGGAAGCAGCGCGTATTTTGGTGCGAACCCTAAGCGCACATAAAATCCCTAGGGGGCCCGCACCAAAAAACGAGGATATTATGTGTAAATGTGTGCCGATATGTAATAAAATGAAATAAGGAACAATTGTAATGAGAGAATCCCTTAATGACAGGTAAATATTTTCCATTCATTAGGTGATTTTCGCT # Right flank : TATGCCTCTCAATCATGCTTGATTCGAGTTAACACTTACGAACGTGTAATCGAATAAAATCAAGTCAGTGGTTAAAAGGACCTTACAGACTAGGAACGAAAATTGCTGATGGTCCTTTACGATTAATGCAGGCTAGCCACTTGCCCTGCTCGTCATCAGTCTGCGTACAGGGAGGAGTGAGTGAATGGCTAGCCCTTGAAAATGGTTGCTTAAAGGTGATGAGGGGTGTAATAAAGGTTCTTAGTCAAATGTTGGGGTGGCATAGGAGGGCGAGCCCCTCTTATCCTACCCCGAATGTTTGA # Questionable array : NO Score: 8.93 # Score Detail : 1:0, 2:3, 3:3, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.79, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCTATATGAGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:56.25%AT] # Reference repeat match prediction: R [matched GTCGCACTCTACATGAGTGCGTGGATTGAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-2.60,-3.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,9.78 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //