Array 1 86-2818 **** Predicted by CRISPRDetect 2.4 *** >NZ_SHRS01000023.1 Bifidobacterium longum subsp. longum strain MCC10071 contig0023, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================= ================== 86 36 100.0 28 .................................... AGCGTGAACGCAAGGCCATCGCATATGT 150 36 100.0 28 .................................... CAGTGTTGCCGCTTTTTCGGGGGTGTCG 214 36 100.0 28 .................................... GTAAAGGGTGGCGTTTTGTCGAAGTCAC 278 36 100.0 28 .................................... GGTCAAGTAGGGTCATGCGGGGTCAAGT 342 36 100.0 28 .................................... GGTTGGTTCGATGATGCAACACCTATAC 406 36 100.0 28 .................................... CTTCCTTTCCATTATTGAAAATCTCCAG 470 36 100.0 28 .................................... ACATTTTGCCCACATTATCCAGATAAAA 534 36 100.0 28 .................................... CGCGAACTTAACGGGGAGCCGGCGTTCC 598 36 100.0 29 .................................... TCGTCGTCCATCTCTGTACCTCGGTTTCT 663 36 100.0 28 .................................... CGTCTCGTGTTCTGGGCCCTCGTGTTCG 727 36 100.0 28 .................................... TCCATGACCGCGTCCATCACCTCATGCC 791 36 100.0 28 .................................... CGTTCCCCAGTGGGGTGAGTGTGATGCC 855 36 100.0 29 .................................... ACCGATTGCAACGCGAATATCCCGGGTAT 920 36 100.0 28 .................................... TCCTGCAACTCCTCCTTGCGGGCCTTCA 984 36 100.0 28 .................................... GTTGTTCCGGGAACAACTGGGAACAACT 1048 36 100.0 28 .................................... CTTGCCTCCGTTCTGCATCCAGCTGTCG 1112 36 100.0 29 .................................... ACGCGGCGAAGAATCTTGTTATCGCGGCT 1177 36 100.0 29 .................................... GTCGCACGTGGCATGGCATGTTGGCGAAC 1242 36 100.0 28 .................................... GCCAACGGCGCGTACACCGGCAACTTCA 1306 36 100.0 28 .................................... AAGAAGACCGCGACTATCGGCTACCAGG 1370 36 100.0 29 .................................... GTGGGAATCCTGTTGAAGTGGGGTGAGGA 1435 36 100.0 28 .................................... AGGAGGTTCAACGCAAGTATTTCACGGC 1499 36 100.0 28 .................................... AGTCATTTGGTGTGCCTTTCACGATGAT 1563 36 100.0 28 .................................... TTGCATACGATGTCGAATATCCCCTCTC 1627 36 100.0 28 .................................... TGTCCTGCATTTCGTGCAAGACCGCTTC 1691 36 100.0 28 .................................... TGTACGCTGACGAGTTTCCTGTTGCTCA 1755 36 100.0 28 .................................... CGGCCCAACGGAGGTAGGTGCTGCGATG 1819 36 100.0 28 .................................... CCAGTTCGACGCGTAGGCGCGAGTGTCC 1883 36 100.0 29 .................................... CCCTTGCGCGTACTGTGCTTGTAGGTGGC 1948 36 100.0 28 .................................... CGTAAACCTTGTTAAACAAGTTGTCAAA 2012 36 100.0 28 .................................... CTGTGGCTTCTTCACCTTCGGCACCTTC 2076 36 100.0 29 .................................... CGCCTCGCCGCCGCACGAGAACGAGTCAA 2141 36 100.0 28 .................................... TATGGTGTAGCCAACAACAAAAACAAAC 2205 36 100.0 29 .................................... CCCTTGCGCGTACTGTGCTTGTAGGTGGC 2270 36 100.0 28 .................................... TATGGTGTAGCCAACAACAAAAACAAAC 2334 36 100.0 28 .................................... CGGGTAACAAGGTGGACATGCTCATTGA 2398 36 100.0 29 .................................... TGTTGAGGGGAACCGTATCAAACCTGATT 2463 36 100.0 28 .................................... TGGTTTCCGTGCCGCATTGGTCGCAGTA 2527 36 100.0 28 .................................... TAGAAGTGCAGATTCCGTTCCTGCAAAC 2591 36 100.0 28 .................................... AGGACGTGCAACGCAAGTATTTCAAGAT 2655 36 100.0 28 .................................... TCGTCGATGTGTTCCAAGAGGTTTGGTG 2719 36 100.0 28 .................................... TATTGTTCGGGTGCGATGGTGATGATCA 2783 36 86.1 0 ..............................TTG.AT | ========== ====== ====== ====== ==================================== ============================= ================== 43 36 99.7 28 CAAGCTTATCAAGAAGGGTGAATGCTAATTCCCAGC # Left flank : TACATGACTAAACACGAAACACCGACTTGACGAAATACATGAATGCTAATTCCCAGCCTTCGAGGTTCCGGTAATGGCTGGGCTTC # Right flank : TGCTGGAATGCTTGGGTTGATTTGGCTGATTTAGCTGTGATGGCCGCTGCGGGAATGGCCCTTGCGCGGTTGGCGGCAGAGGTTGCGGCGCGGATTGCGGCACTGATTGTTGTGCCAATTGCGTCTGCGGTGAAAAATATGGCGACGGCTGTGTCTGACTGTTTATCGGCGGATGTTCCGGCTCAGGTTGTGGCTGGAATGGAGAATATTGCGGTTGCGCCATTGTATGCCCCTGCCCCTTCATTGCCATTTCATTGGCGCATGGCGAGGGCTGAAAACCAAGATGATGAATCCTGCATGAGTTATCCGTGATTCCTGTACGTTGGTACAGCGCGGAAGGTTGAGCAGCCGACATATGCAGGCTTGTCGGTTCAACTGAATATCTTTAAACTATGACTTCCAATACCCTTCGTATGTCAACCATGTTCCTGCGCACCCTGCGCGAGGACCCCGCTGATGCCGATGTCGATTCAGCCAAGCTGCTGCAGCGCGCCGGCTAT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CAAGCTTATCAAGAAGGGTGAATGCTAATTCCCAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.50,-0.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [51.7-43.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0 Confidence: HIGH] # Array family : NA // Array 1 24641-25254 **** Predicted by CRISPRDetect 2.4 *** >NZ_SHRS01000024.1 Bifidobacterium longum subsp. longum strain MCC10071 contig0024, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================= ================== 24641 36 100.0 28 .................................... ACGCAGAAACCATAGACGTCGTGCCAAC 24705 36 100.0 28 .................................... CTGAGGAAGAACCTGACCAACAGGCAGC 24769 36 100.0 29 .................................... ACTGGAACCGGGCGCCCCACATCAAATAA 24834 36 100.0 28 .................................... CTATGGGGGACTCAAATTAAGTTAGTCC 24898 36 100.0 28 .................................... TTACTGATAATGGTTTGTGTTCAACTCC 24962 36 100.0 28 .................................... AGGCGCTCGGCTTCGTGTACGCGCTGGC 25026 36 100.0 28 .................................... ATAATGTCCTCGATACAGTCTTCAATGG 25090 36 100.0 29 .................................... TATCTGTTCGACCCCATGAACCGTCAATA 25155 36 100.0 28 .................................... ACTATGGATATCGACATGAAAATCCTCC 25219 36 77.8 0 ..........................TG..TGTGTT | ========== ====== ====== ====== ==================================== ============================= ================== 10 36 97.8 28 CAAGCTTATCAAGAAGGGTGAATGCTAATTCCCAGC # Left flank : ATTCAACGGTTCCGGTTTGACTATACCGAGCTCATTGAATGATTTTGCGCAGCAATTTGGTTTATATTGCGAAGGCAAAATCGACAGGTTGCAGGTTCCCGAATATGTAGGCGAGTCATGAAACGCGATGAGGACAGTGGCGGCATGTGGTGCTTGGTGATGTTTGATTTGCCGGTCAAGACAAAACGGCAACGGCATGCTGCAACTGTCTTTAGAAATATGTTGCTCGACATGGGATATGGAATGGTGCAGTATTCCGTATATGTGCGGTATACGCCTACGCAATCGGGTAATAGGGCGACGGTCAAAATGATTAAAGACAATCTGCCAGCTAATGGCTTAGTTAGAATTTTGCATATTAGCGATCATCAGTGGTCCACGGCGGCCCGATTTTCTTCTGGAAAACGTGAGATTGAGGAAGAAACGCCTGACTTTCTCACGCTTTTTTGAACGTAGGAGAGTCTGAAAAGATTGAAAAATAGCCCTTCTTGATAGGCTAT # Right flank : CAATTAGTTGTTGCGGGTTGGGGGCGGTGACGTTTTGTTGGACTTCGTTGTCTGAATG # Questionable array : NO Score: 6.15 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CAAGCTTATCAAGAAGGGTGAATGCTAATTCCCAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.50,-0.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [63.3-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.05,0 Confidence: HIGH] # Array family : NA //