Array 1 187526-186971 **** Predicted by CRISPRDetect 2.4 *** >NZ_BBYA01000009.1 Leptolinea tardivitalis strain YMTK-2, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ========================================= ================== 187525 36 100.0 36 .................................... GATACCAAAAAGTTGATTAAGCGTAAGTTCTCGCTG 187453 36 100.0 35 .................................... GAAACGAATCACATCAATCCGGTTATTCACAATTG 187382 36 100.0 40 .................................... TTACCGCTATGAGCCACAAGGCTCCAAGTAATCCATCTTT 187306 36 100.0 39 .................................... CTAATTCTTCTAAATCATTAGACAACTGCCCCGGGTTGC 187231 36 100.0 41 .................................... CCTCTTTGCTCTGGCCGTAGACCCGGTATGTCTACGGTCGT 187154 36 100.0 41 .................................... GGACAGCGGGGCTTACTAAGAGCAAATTCCGGCAACCGCTC 187077 36 100.0 35 .................................... GACGACCAATTTTGTACAGTGATTCTAAGTCATCA 187006 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ========================================= ================== 8 36 100.0 38 GTTAAAAACAATAAATGCCCGTCAGGGCATTGAGAC # Left flank : GGTACACTCACCTTCCTGGTGCTGCCGGCCGCACTGGGACACACCGTAGCCCGTGATTCGTTTTCCGCTGGGTTTGATTTCACCGGCTGGTGGAAAATCTTCCGCGCTAACACCGGAGGATTTCTCATTGCCCTGCTGGTGATCACCGGCCTGATGGGGTTGGTTTACATTGTCAGCCAGATTTTTTCCATGACCATCGTGCTGATCTGCCTGATCGTCCTCCTGCCGCTGGCCGTCGGTTTCTACGTTATGCTGATTGGCGCCGCGCTGGTGGCCGGGGCGTACCGCGAGGGGGTGGAAAACCTGGAGCTGGCCGAGCTTAAGCTGGCGGAAGCCAGTATAGTTGCGGTACAGGAGGAGAAACCCTCGTGATGACATTCGATGCCAGATATCCCGTAATCTTTTCGCGCACCCCCCCTCCCAAAAATGGAATATCCGGTATAATTTCCATGTGGGGTGCGCGTCCAGAGGAATATATTAAAAGAAAAGAGCGCATCACG # Right flank : ATTGCCTTGAGTGCCGTACCGTTGATAACACAGCACAATTCTTATAGGGTGGGTTGAAGGCACATTTGAAAACCCTGTCCATTTGAAAGAGCTTTGCCAAACATGGAGAGCCTTCAACCCACCTGATTCTGTCCATTCGATCCATGTCAAAATACCGGGTGACCTGTCAAACGGGCTTTTTTCATCCAAAAGACCACCGGAAAGAAATTAATAGGGTGGGATCAAAAGCGATCCCACCCTATGAGACTTCAACCCGTATACCGGGTGACCTTTCAACCAGGCGTCTCGCTCAACCATGTGGTCATCGGATAAAATTAATGTGGTGGGATCAAAAGCGATCCCACCCTATGAGATTTCAAGCCACATACCGGGTGACCTGTCAAACGGGCATCTCGCTCAACCATATGGTCATCGGATAGAAATTACTATGGTGGGAACAAAAGCGATCCCACCCTATGAGACTTCAACCCGTATACCGGGTGACCTGTCAAACCAGGCGT # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTAAAAACAATAAATGCCCGTCAGGGCATTGAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:58.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-9.90,-11.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [53.3-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.37 Confidence: MEDIUM] # Array family : NA // Array 2 277998-279285 **** Predicted by CRISPRDetect 2.4 *** >NZ_BBYA01000009.1 Leptolinea tardivitalis strain YMTK-2, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================================ ================== 277998 36 100.0 37 .................................... AGATATTCCGTGGGATGACATTGCGTCTATGATTTCG 278071 36 100.0 38 .................................... AATTTCTTGTTCTACGCAAATTGATGCAAACCACATTC 278145 36 100.0 36 .................................... TTCACATCCAAAATAGATAATCTTATTGATATCAAA 278217 36 100.0 44 .................................... TCTGCAATGGGAAAGAAATAAGCTCCCCGAAGAATACCACATTC 278297 36 100.0 40 .................................... TTTTTCGCTTGTACGTGCGTCACCTTTCATAGCGAAAAAT 278373 36 100.0 38 .................................... ATAGATGGGAATGAGCACAATGAAGGCATCTGAGAATA 278447 36 100.0 39 .................................... TTCATCAGTTGTCAATTCTGCTGTCATATTCCCGATGGC 278522 36 100.0 36 .................................... AGAAAAACTGTACTTCGTTCCCGCTTTCGTAGCTAA 278594 36 100.0 36 .................................... AAATACAAGCAATGACATCGGATTTTTCCCGTCTGT 278666 36 100.0 40 .................................... CTCATCATTCATTTCGCTGCAATCACCCATTGCAGCGCTT 278742 36 100.0 41 .................................... ACAGTACAATCCATTCCTCTAAGCTCACTTTAACCTCCTAG 278819 36 100.0 33 .................................... GAATACTTTCATCTTGCCATAGACACCATAGAT 278888 35 97.2 33 ........-........................... CCAATAAATTTGACTTCATTGGCCTTCAGTTCA 278956 36 100.0 38 .................................... GCGTGTTCCTTTGTCTAATTCGTCTAAATCGTTAGACA 279030 36 100.0 37 .................................... ATATGCCTCCCTGAATTGCTCAATCGAATCTGTTCTG 279103 36 100.0 35 .................................... CTGTTAAAAAGTCGAATCCATGTTTCCCTATCGCC 279174 36 97.2 40 ...................T................ TGAGTATGAAGAAAAGGAATATCAAACCCAACTCCATTGT 279250 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================================ ================== 18 36 99.7 38 GTTAAAAACAATAAATGCCCGTCAGGGCATTGAGAC # Left flank : GCGGGCGCTCTACCGCAGGAACGGTTTTGAGGTCTGCGGTCCTTTCAACGGATACACCGATGACCCGAACAGCGTCTATATGACGAGGGAGATTTAGGATCAATCTACCGCAGACCGGTCAAGGCGGCCGTCCTCCTGGCAGCTGCTGGTGTTGGGGGAGTTTATGAAGGCTGTGAGGGGAAAATTAGGGGAAATGGAGGCGGATACAGCGAAGGGAGAAAAGGCTGGATGTCTGCCAGAGTGTTTTGTGGATGTAAAATGAAGGTATATGGAAAGGGGATGCGGACAGAGATGTTGGGTGATGAAATGAGGGATTATGACAAAAGAACCGTGGAAGCAAAAACAAGCCTTGCTGGTTTACTGATGATGGATAGTTCTGTCAGGTATGCCGAAGATACCCTGAATTCGCGCACCCCCCTTCAAGAAAATGGATTTTCCGGTATAATTTCAGGGAGGGATGCGCGATCAAAAGAATATATTAAAAGAAAGAGCGCATCACG # Right flank : CATAATCTGCCTGTTGGTGGTTGACTTTGAAGGTATCAGGGGGTAAAACACCCAGTGCCCATCAAAAGTCAGATGTGCGGGTATCCCATCGCCACAAATTCCCCTGCCGGCCAAACATCCGTACAGCGAGCGCCATAAACAGAAATATTCACCCCATTTGCCCCTTATTGATTCGATACGCTAGAATTACCGGATACATCCCCGCCCATCTGGAGGAATCTCATGAAGCGAGCACTTCCGGTAATTGTGTTTCTGGCGCTGGCTCTCATCACACTTACAGCCGCCGCCGCGCCGCATCCTCCCATCACCCCTGAAAACGTGACTCAACTGGTCAGGCAGTCTGAAACCGGCACGCCGTCTCTGCGCCGGGTTGTCTTTTCACCTGACGGTTCTCTGTTTGCCACCGCCGCCGGCAATGACAACGACTACGGCATCAAGATCTGGCAAAGGGATGATCTGTCTCTCAAGAAGGAGATCACGAACCTGACCGGCATTGTGTG # Questionable array : NO Score: 3.25 # Score Detail : 1:0, 2:0, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTAAAAACAATAAATGCCCGTCAGGGCATTGAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:58.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-11.00,-9.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [61.7-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.05,0 Confidence: HIGH] # Array family : NA // Array 1 28620-22304 **** Predicted by CRISPRDetect 2.4 *** >NZ_BBYA01000015.1 Leptolinea tardivitalis strain YMTK-2, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ====================================== ================== 28619 31 100.0 35 ............................... CTCCAGGTCATAATCCGGGTCATCATCCGCCGGAG 28553 31 100.0 36 ............................... GACAAGATCATGGACCGATTCCACCGGACGGATAAG 28486 31 100.0 36 ............................... ATTATCCAAAACCTGCCTATGCTGATAACGGCAGCG 28419 31 100.0 36 ............................... ACTATCACCGACGATGAACGCTCCGCCAGCATCACG 28352 31 100.0 34 ............................... TCCAGTAGCGCCGTTATGATGGTTGGGATTGCCG 28287 31 100.0 35 ............................... AGATTGGAATAAACAATGATCCGCAAATCACACGG 28221 31 100.0 35 ............................... TTCGATGGCTGGCAGAGCGCGGGTATGGCGTTTGG 28155 31 100.0 34 ............................... CAATATGTCGAAGATTACCACCCGCAACATGAAG 28090 31 100.0 35 ............................... GGACAGGGGCGGGTCGGCAACCAATAATCGACATG 28024 31 100.0 36 ............................... ACTTTCCAATGCTTCGGCTTTTTCAATGGCGGCCGG 27957 31 100.0 35 ............................... CCCAGTCTGCATCACAATGGTATATACTCCTGGAG 27891 31 100.0 35 ............................... AAAGGCCGCGAGATTGTTGCCCTGTCTGACGCTCG 27825 31 100.0 35 ............................... CTCAAATTGATTTGTATATCAAGGACGGTACCGGG 27759 31 100.0 35 ............................... CTGGTCGTATCCAATGTAACAGTTGCATCCACAAG 27693 31 100.0 37 ............................... TTATGCCAGCCAGAAAACCATCCAGTTTGATCAATCG 27625 31 100.0 36 ............................... CTGGAGATGCTACGCCACAAACACGGTTGTTCGGGG 27558 31 100.0 36 ............................... GCGCGCCACGCGGCTTTGGTTGGATTACCAATCCCG 27491 31 100.0 36 ............................... ATCCCCATAGCAGGCGCCGCGCCATCTACATCATGG 27424 31 100.0 37 ............................... GCGGCATTGTCGATTGAGGCGTTCGCACGCGGGAACG 27356 31 100.0 34 ............................... ATTGATATCCTAGGTAGCCGTGGTAAATGTCACG 27291 31 100.0 36 ............................... CATCAAAGCCGGCGTCGGCGGGAAATCATGTATTAG 27224 31 100.0 34 ............................... ACGACCGGATGCCCATATGGATGATCCGCTTTTG 27159 31 100.0 35 ............................... GCTGATGGGGAACAGAAGGGCGAAATTTACGGATG 27093 31 100.0 35 ............................... GCCCGCACCATTTTGACAGGTACTGCATAATGGCG 27027 31 100.0 35 ............................... TCCCGTGGAAAACTGGCGTCTGTAAATCAATGCTG 26961 31 100.0 35 ............................... ACCAGCGCCTATGAAGCTCCCTGCAAGCTGTCACG 26895 31 100.0 34 ............................... CCGCCAGAAGCACGGATAGCGCACCTGCATGACG 26830 31 100.0 36 ............................... CTAATATGGCAGTTGTGTATATAGTACAACTTTGCG 26763 31 100.0 34 ............................... CCGTCAGGCAACGGCCACTGTGCGACCCCGCGCG 26698 31 100.0 35 ............................... GTGACCTCGACGTTGTTATGCCCCAGCCAGCGCGG 26632 31 100.0 35 ............................... CAGAAATTGCCGAGGCTCAAACCCTGATACTGCCG 26566 31 100.0 36 ............................... CTGCGCCTGACAAACGGGTACGAGGCGACCATTTAG 26499 31 100.0 35 ............................... ATGTTCTACCTGGGCACTTTTGAACGCCCGTAAAG 26433 31 100.0 34 ............................... ATACGAACCATTTTGACCAAAACAGCACCAAAAG 26368 31 100.0 34 ............................... TGGCCATCCAGCAGCCCGGCGAATATTACAGCCG 26303 31 100.0 35 ............................... CTTGCGTTCGGCGCCGGATCCGCTGCCCGAATATG 26237 31 100.0 35 ............................... CCGTATGCCGAAAACACCACCACATCATAGATGGG 26171 31 100.0 35 ............................... ATCCAGCCTGCCACGTCCAACCATGTAGACGATTG 26105 31 100.0 35 ............................... GCTCATCTCATCCTCCTACCCCACCACCGCCGGAG 26039 31 100.0 35 ............................... TCCCCGAATATTTTGTACCACCACCCGCATTCCTG 25973 31 100.0 35 ............................... AAAAAAGGTTACGCCATATCATCGCCCGCAAGCAG 25907 31 100.0 35 ............................... AGACCGTGACCGCAAAGCCCTTGACGCGCTGGACG 25841 31 100.0 35 ............................... GGGTTTTGTCTCGCTCATTTGATGCCCCCGCAGAG 25775 31 100.0 38 ............................... AATTGGTGAAGATGCCTGGATTTCCGGCATTCGTCACG 25706 31 100.0 36 ............................... AACGACATTTATAATTTGCATGTCGCCTCTCCTCCG 25639 31 100.0 34 ............................... CAGTGAACGAGGGAAATCCACCGTGCCTACCAAG 25574 31 100.0 35 ............................... GACCATGAATGTTTGCTACAATGTCGGGGGTAGCG 25508 31 100.0 35 ............................... GATAATATGATCAAGGAACAGATGCGACTGGCTGG 25442 31 100.0 36 ............................... TCATTAACAATACATACCTTGAATGAGATATCATCG 25375 31 100.0 34 ............................... CCGCCAGAAGCACGGATAGCGCACCTGCATGACG 25310 31 100.0 35 ............................... CATTTCTCCGTCCGGCTGACCCATCCCGCCCGGTG 25244 31 100.0 35 ............................... CAGTCCAGCGCGGCCGAAAGATATAGCCCGGTAGG 25178 31 100.0 36 ............................... TTCACCAAGACAGACTGGGGACAGGTTGGTCTGGAG 25111 31 100.0 36 ............................... CTTGCGTTCGGCGCCGGATCCGCTGCCCGAATATCG 25044 31 100.0 35 ............................... GGGATGCCTGCCCCAGTATGGGGCAAGGTCAACGG 24978 31 100.0 35 ............................... CTGCATGATCCGGAACAGCAGTGCCGGTGTATCCG 24912 31 100.0 37 ............................... ACATAATCCCCGATCGGCCTGACAATATCTCCGGCCG 24844 31 100.0 36 ............................... AAAATCAAACGCGGTGGATTAATCACCTACAAATGG 24777 31 100.0 33 ............................... GAGGTAATACCGGTACTGTCTGCCCATGGATGG 24713 31 100.0 35 ............................... ACTATAATATCGGGGGTAGCGGTAGGGGTAGCGGG 24647 31 96.8 36 ..............................A TGGCGCACAATTACGCATCCGGCAGGGAGTTTTTCG 24580 31 100.0 34 ............................... TCCTGCAGCGGCCATGGATCGAGAATGATATAGG 24515 31 100.0 35 ............................... CACAGGTTGATCAACGCTCCGTCAAATCCATCCTG 24449 31 100.0 36 ............................... GGAGAAAACGATCAAGGATTTTGGCTGTTTGCTGTG 24382 31 100.0 35 ............................... CAGTTTTCCAAACGCCAGGTCAATAGTCTCCGGCG 24316 31 100.0 35 ............................... ATCCTGGCTTCGGCGCACTGTTTTTCCCTATTTAG 24250 31 100.0 36 ............................... TCGCCTGGCTCCAAAATAGCCCATGAGTCAATCTTG 24183 31 100.0 35 ............................... TAATACACCCTCTTTAGTGGCTAATGCTATGGTCG 24117 31 100.0 35 ............................... ATATCACAAAATATGTAGGAAGTAGAGGAAAAAAG 24051 31 100.0 37 ............................... ACTTTTTTTGATTTTTTCGGTATTCGTTGCGTCCTTG 23983 31 100.0 35 ............................... TCTGGAATCATAGGCTTCAACTATGATCCAGTTCG 23917 31 100.0 34 ............................... TCTGATGGCTGCGGTAAATGAACCATCCCAAGGG 23852 31 100.0 34 ............................... GTCAGGGTATTTGCTGTTGCTGTTATTGATATCG 23787 31 100.0 35 ............................... AAAATATAATGCCATCAAATACGCAACGCAAGAAG 23721 31 100.0 35 ............................... AGGGAGATACAGTCCGGGGGCGCCTACCCTGGGCG 23655 31 100.0 36 ............................... ATCCAGCGGGGTGGGCAGGTCACAGCCACAGTCAAG 23588 31 100.0 34 ............................... ACAAATTCAGGGGAGAAACAGATTTGTCCTGGGG 23523 31 100.0 36 ............................... TGACAATTTCCAGGCGGCCGAATATTTTCTTACCAG 23456 31 100.0 35 ............................... GTGTTGTCTCCAGATACGAAGGAGGTGACGGTTTG 23390 31 100.0 35 ............................... AGACAAATTTGCCGATGACATGTCCGAATACGAGG 23324 31 100.0 36 ............................... ATCTAGCAAACATTGTAAAATCTCTTCAATTTTACG 23257 31 100.0 35 ............................... ATACCAGCCTGGGCCACTTCTGCGCCGGCCATAAG 23191 31 100.0 34 ............................... CACCATGTGTCACCGTCAGACCAATCGTAGAACG 23126 31 100.0 34 ............................... TTTTCTATTTGAATATTCTTTATTATTTCCTCCG 23061 31 100.0 34 ............................... ACACTGAAAAAGCTATTAGGTCACACTACCCTGG 22996 31 100.0 35 ............................... GCTACCGCCTAAAATTGCCTCAACCAAGTCACAAG 22930 31 100.0 35 ............................... ATTGTCAATAGGTAGATATGACAAATGTCACTCGG 22864 31 100.0 35 ............................... GCTACCGCCTAAAATTGCCTCAACCAAGTCACAAG 22798 31 100.0 35 ............................... ATTGTCAATAGGTAGATATGACAAATGTCACTCGG 22732 31 100.0 37 ............................... GTTACATTGCTTACAATAAATCCAATGAAAGAACTCG 22664 31 100.0 36 ............................... AGAACGTGTTTTTGCGTCTGTCCGCAGGATTACATG 22597 31 100.0 34 ............................... TTACTAGGTTAATTCTTTCTCGCGCTGTACCTGG 22532 31 100.0 35 ............................... CCAACCTTTCGGTTGGGCCAGCAAGGACGCCCCCG 22466 31 100.0 34 ............................... CTTGCCTCCCCACAGGTTACCCTGTGTATTTGCG 22401 31 96.8 36 C.............................. CCCAGGCAACCCCGGAGGATATCCGGGGCAAAGATG 22334 31 100.0 0 ............................... | ========== ====== ====== ====== =============================== ====================================== ================== 96 31 99.9 35 TCGCTCCCCATGCGGGGGCGTGGATTGAAAT # Left flank : GGGAGATATTGACGCTTATCCACCTTTTTTCTGGAATTAGGAAAATCACCATGATGGTTTTGATTACATACGATGTTAATACAGAGACAGCCGCCGGGAAAAAAAGGCTGGCGAAAATGGCCAAAAAGTGCACGAACTACGGTCAGCGTGTCCAAAACTCTGTTTTTGAATGCCTTATTGAACCGGCCATGTTCAAACAATTGCAGGATCAATTGGAGAAGATAATGGATAAGGAAAAGGACAGCCTCCGGTTTTATTATTTAGGTGATGAATGGAAAACGAGGGTGTATCATGTGGGATCAAAAAAAACCATGGATTTGGAAGGAACGTTAATTATATAATTGCGAAGTGTATGTTCACACGGATTGCTGTTGAGGTTCGCAGGAAAAAAGCAGTCATTTTTGATAGAATTTCGTTTAAAGAAGGGAGATTTATTAGATAAAAGCAATTGATCCCCAGTATATGGGGGATAGTGATAATAATATCGCCAGAAATTGCGG # Right flank : ATCATCTTATGAGCTGAAGTGTCATCTAGTGCTTCGGCGATTATTCTCAACGATAATCAATAGAAAGGAGGTAATTTTGAGAAATTCTTGCAATCGGTCGATGATTAGTCCCCAAAAGTGCGTAAAACAAAACCACAGACCGTATGCCTACTCAAATGAACAGGTATACATGTCTGTGATTGGCCTGAGTCGGGGCGAGAGGATTTGAACCTCCGACCTCTTGCACCCCATGCAAGCGCGCTAGCCGGACTGCGCCACGCCCCGAATGTTTTGTATTATAAGCCTGACTATCAGTTTTTGGCAAGATTTTTCATAAGACTATTTATACCGGAACAAAACCAGGGATAAATGTTGTTATCACCAAAATGCCTGCCAGGATGATCAGAATAATAACTGTTATCCAGGCAAAAATATTAAACACTTTACCGTTGACATAATCTCCCATAATACGCCGATTATTGATCAGTGAAAGCATGGAAATCAGAATAACAGGCAAGAGC # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TCGCTCCCCATGCGGGGGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [7,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched TCGCACCCCATGCGGGTGCGTGGATTGAAAT with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.30,-9.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [61.7-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,9.78 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 56885-57953 **** Predicted by CRISPRDetect 2.4 *** >NZ_BBYA01000015.1 Leptolinea tardivitalis strain YMTK-2, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ========================================== ================== 56885 36 100.0 38 .................................... TCATCCAGCCATGCGGGAAGAGTACTGTCTTCATCCCA 56959 36 100.0 40 .................................... ATAACCCATGATGCGGGTATATCCACCCTTGGTCTGGTAG 57035 36 100.0 42 .................................... TAAATTTTGAGAAATGAATCACATCAATCTGGTTTATCACAA 57113 36 100.0 36 .................................... TCAGCCAGGCTGTTATTTATTAGCTTTTCCAATTGT 57185 36 100.0 32 .................................... CAACTGAACTATTTTCCTATGCTTCAACTGAA 57253 36 100.0 41 .................................... CTCCATCAATTCGGCATTCGAATGACCTCTCTTATTCTTTT 57330 36 100.0 37 .................................... AAGGATTTTCTTGCCTTTGTCATCCGTCATTGTTTTT 57403 36 100.0 39 .................................... TCGGAATCAACTTCCTGACTAGCGAAGCCTGCGCCCTTT 57478 36 100.0 42 .................................... ATCAACTGTTTAGCGGCGGCCTGCAATACGTCTGCTGGTATA 57556 36 100.0 33 .................................... TCATTGGTGGATTTTACCAGTTGCATGAGGATT 57625 36 100.0 36 .................................... CATCAGCTTCACTGTTGTACTTCATAAGTACAGTAA 57697 36 100.0 38 .................................... GGACCTCAACAGCCCGCTTTGAATGGACATAATCGATG 57771 36 100.0 39 .................................... ATCCTGGTTTCTGGCGGATATATCGCGGAGGCGGAGATA 57846 36 100.0 36 .................................... CAAAATCTCCTTTAACTCGCCCTCTAACTCTAAACT 57918 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ========================================== ================== 15 36 100.0 38 GTTTAAAACAATAAATGCCCGTCAGGGCATTGAGAC # Left flank : TGCCAATTCGCCAGTGTGTCATTGAACAGGCGCGCCAACTTGCCCGACGTTTTCAGGAAAACCGCCCCGGTTATCAGGGAATGGGTTTTCATTAGTTTTCATTAGAGGTAATGGTATGGACCGTTTCTTTTACATACTTGCTTATGATATTTCAAATGACAAACGCCGTACAAAAATTGCAAAGCTCATGGAATCGAGCGGTACACGAGTTCAGGGAAGTGTCTTTGAAGCCTGGTTTTCACCGAAAGAACTGGATAAGGTGGTGCAGCGTTCAAAAAGAATACTTGTTGATAAAGAAGATTCTCTACGTGTGTACTTTCTCTGTGAAGATTGCCGCAAAAAAGTCAGTCTGTATGGTAAAGGAAAAGTGACAGAAAAACCTGGATTGGTGATTATTTGATGAATTCGCGCACCCCCTCTTAAAAAATGGTAAAATATACATAATTTGTGAGGGAGGATGCGCGACCAAAGGAATATATTAAAAGAAGAAACAAACTACG # Right flank : CCCGTTGAAAGAAATTCTGGAAAAGATAGCTATATGATGAAAGAAGAAAAATGAACACTATTTCATCTGAGTTAATTTTTATGCTTGTGATATTTGCTGTTCTGTTTGTTACAACAATTGGATCACTGTTACTAATTTATATTGCAATAAAGATACAACAAACTTGTCAACATCCCAAAATTAGTACCACTTTAAAGTAGAAACTCAGGCATGAATTGATGCATATTGGTACGGTGATAAGCCCTTCAATGACTCATGGGGCCTAATGACATTGTATTCTTCCAACCATTGTTCTGAAATTTCTCTCACCTCATTCAGTGAATTGAATAAATAGGCATCCAGAATATCTTCCCGGTAGGTCCGGTTGAATCGTTCAATATATGCGTTCTGAGCCGGTTTGCCAGGCTGTGTGTGAGCCAATTGAACGTTGTGTTCCTGTGCCCATTCCTCCAACCGATGGGAAATAAATTCCGGCCCATTGTCCATCCGTATTTGCTTGG # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTAAAACAATAAATGCCCGTCAGGGCATTGAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:58.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-11.00,-9.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.37,0 Confidence: MEDIUM] # Array family : NA // Array 3 59520-59924 **** Predicted by CRISPRDetect 2.4 *** >NZ_BBYA01000015.1 Leptolinea tardivitalis strain YMTK-2, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ========================================= ================== 59520 36 100.0 41 .................................... CTACATCGACTGCAATTCCTGTCGACCGATTTAAAACTTCG 59597 36 100.0 35 .................................... ATTGATACATGTCCTTGACAGTCCGATTCAAAACA 59668 36 100.0 36 .................................... AAAACTACCGCATATTTTGTGCCTTTTCTGAATTTT 59740 36 100.0 40 .................................... GAAAGTCATAAGTAATTGTGGCGTCGAAAAAATCAAACAT 59816 36 100.0 37 .................................... TTGACGGCCTCGGCGCTTGCCGTGTTCTGTAAACTTG 59889 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ========================================= ================== 6 36 100.0 38 GTTTAAAACAATAAATGCCCGTCAGGGCATTGAGAC # Left flank : CAAATCGGCAAACATCCGTTTGAGGCGCTGGTTTTCTTCTTCCAATTCTTTTAATCTTCTCAGCGAACTGGCATCCATTCCGCTGTACTTTGATTTCCACTTGTAGAAGGCACTTTTGCTAAATCCGTGCTTCCGGCTTAAATCTTCAACCGGTATCCCTGATTCCGCCTCTTTGAGGATCGTCACGATCTGACCTTCTGTGAACTTCATCCGCTTCATGTGGTCTTCTCCTGGTCTGATTTTGCCAGAAGTTTCCACTTCTTGCTGGTACTATTTTAGGGGATGGTTACCGAGGTTGAAAAATTAGGTAAGAAAATTGAACAGATTATTGGCGCATTATTCCTTATTGGGTTCATCTTGCTTTTCGCGTGTTATGGACCAATCATAATTTTTTAGGCCTTTCACTGCCACCATGCCATTGAACTGAGATTCTTCAGTTCTTAATATTGAACTACCTCAAGGTTATCAAACCGCTTCGTTCTAATGAATGTTTGAAATGA # Right flank : CGCTCCGATGGCTGAGCTCGTCGAAGCCGTCGAAGCTGGTTAAAACATATTAATTTAACATTTACAACGATTCCGTACCGCCATGTTATAAACTTGAAATCAGGAAATTTCAATAGCAAGACGAAAAGTATTACTATCAACCACAACGTTACACAATTTTCATAGCATGAGTCAGTATGCCAGAGAATCAGCGAACACTATGCACAACAAAGTTGTTCATCAGGTCTGCAGTCATCGAAAAACTGAACTGTTTTTATTACGGCTTCAGTTGCATCATCTACTTATCCATTAATCATAAAACATCAAACCTTTGACGGATGTATTTTTATTCATCACATTGATGGAAAAACACGCGAGAATTCGGTTCGTAACACAATCCATATAATCTGTTCCTTCGTATACGTCTGGCTTTTCTTGAAAAATAGACAATCCCGTCAGAATTGACAGTTTGAAGATCAAAAATTATTGAATCCACTGTTCAGATCAAATTGTGGGTAATT # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTAAAACAATAAATGCCCGTCAGGGCATTGAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:58.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-11.00,-9.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [68.3-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.64,0 Confidence: HIGH] # Array family : NA //