Array 1 121927-120530 **** Predicted by CRISPRDetect 2.4 *** >NZ_PJKM01000001.1 Akkermansia muciniphila strain BSH01 scaf-1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== =================================== ================== 121926 31 100.0 34 ............................... AATATGTTCGGCGATTAACGAATCAGGCAAAGAG 121861 31 100.0 34 ............................... TAATCCGCTTTTTATGAAAGGAGATTCCGAAATT 121796 31 100.0 34 ............................... CGGGTCGGTGTACGGCTCCTCTGTCACGCTGGTA 121731 31 100.0 34 ............................... CGGCTTGCCGGGGAAGTATATTCTGATTCTATTG 121666 31 100.0 35 ............................... CCCACAATTGACCAAACAAGCCTTTTTGCAGGCGG 121600 31 100.0 35 ............................... CGGAAAGTGAAATTCAAGACTCCGGAGGTTAAGGA 121534 31 100.0 33 ............................... TGGCTGGGGGGAGATTGTCTGGAAGAGACTGGA 121470 31 100.0 34 ............................... TGGCGGAACGGCTGGGGCTGGATACGGATGAAGC 121405 31 100.0 34 ............................... GCACCAATTGCAAACAACATAATCGCCCCTTTCA 121340 31 100.0 34 ............................... TTTGTTTATGATGGTGTTGATTATCGGTTTCAAC 121275 31 100.0 34 ............................... TTTGTAAAAGAATAGTCAAAATAAGCCCTATGAA 121210 31 100.0 34 ............................... TATTTCCCAACCCGTTTTTGTCTGCTTGGCAGCG 121145 31 100.0 34 ............................... TCCCTTTTTCCGTCCATGGCATTATTTCCAAGAC 121080 31 100.0 34 ............................... GAATTTATCCTCCGTGATTTGCTTGGCATATACG 121015 31 100.0 34 ............................... CGGGGGGAATCATGGGGAGGCTGCGCCTCCGCAA 120950 31 100.0 34 ............................... ATCCAGCAGCACAAGCTGATCATCCGTGAATTCA 120885 31 100.0 34 ............................... AATATTCACGCCACGGCGCACGTGCCGGGGGATC 120820 31 100.0 34 ............................... CGAAGAATGCCAGCCGTATCTGGCAATTCTTCTT 120755 31 96.8 33 ..............G................ GGGCAAATGGGGCTCAAAACGGTCATCAAGCGT 120691 31 96.8 34 ..............G................ AGGATAGTATTGCGATACCAGAGGTTATTGAAAA 120626 31 96.8 34 ..............G................ CCGGGAGCCAAGACAAAGCGGCTTGTCCATGTCA 120561 31 83.9 0 ..............G......A..A....TA | G [120543] ========== ====== ====== ====== =============================== =================================== ================== 22 31 98.8 34 GTCGCACCCTCACGAGTGCGTGGATTGAAAC # Left flank : GCCCTGTAAGGAATATTCCGTCATTCATTCGTTAACGGGAGCCGTCCGCAAGGGCGGCTCCTTTTTAATGGCAGCGGAAACCGGAGGGGAATTCGGCTTCCGGCAATGGGGAAAACGGCGTGCCGCCCGGGAGGCCTGTTGTTTATGTGTCTCCATGTTGGCGGCTCCGGGGATGCACGGTTCTGTTTGAAGGAACATGGAAGATGTTGCTGGACGCGGCAGAGGGGAACGGCTAGCATCAATGAACCAAGTTGAATGCAAGCCGGACCGGACGCGGCGAAGATGGAATATTACGGAATAACGCCGCGTCTGATGCCGCCTTGCGCCAACCCCAAGCTCACAGAAAATTCCCGGGAGACCGGCGCTTGCTGCAAGTGATTGGGAAATGGATATTGACAAAAGAATCACCTCTTATCGGGCCTGACCGTATCCGGCTTCCGCATCAGGTTGGCGCAAACCCCTTGCTGCGCCCTTGATGCTCAACCCGTATCCTCCAGGCC # Right flank : GTGCAGTTGTTTTTAATGATGTCTGCATGGTAAGAGAGGTGATTATTTTGATAAATGGTTTTAAATGGTTATTTATTGAATATTCTTTTAAGGAGGATTTTTATATTGGGGAGGACGCCGGATGAACAACTTTCCGGATGGTTTATTATGGTTTCCGGACAGCCTGTCCGGAAAAGGGAAGCAGGCAAGCGGTGCATTTCCTGCGGCATGGGATTTTTTTCCGCGTTCACAGTTTGTGATGGATGAAGCTGGAGCAATCCAATATAAAGATAAGATGCATATAGACTGGTTGAATGATTTTTTGGAATGGACGCCTATTTTGCTGATGGTGCTGGTAGCGGTCGTTTTTCTGGTGGCGCTGAAATGGAGAAGCGGCAGGATGAAGAAGTTTCTGGAGGAGTGGAAACGTAAGATCGTCCGGCAGGCGGAAGCCGGGAATCCCTCCGCCCAGTTCCGTCTGGGGCGCATTTACCAGGAGGGGGACGGCGTGGAGAAGGACC # Questionable array : NO Score: 9.20 # Score Detail : 1:0, 2:3, 3:3, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCCTCACGAGTGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: R [6,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCACCCTCACGGGTGCGTGGATTGAAAC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-5.30,-4.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [66.7-38.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,9.78 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 437521-438852 **** Predicted by CRISPRDetect 2.4 *** >NZ_PJKM01000002.1 Akkermansia muciniphila strain BSH01 scaf-2, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ==================================== ================== 437521 31 100.0 36 ............................... AGCAATTAATGAATCGGGTAAAGCATCATATGGTAT 437588 31 100.0 34 ............................... CCTGACGAGCTGTTCCGTTCTTGGCGCGGCGATG 437653 31 100.0 34 ............................... TGATACGTCTGCTTGCTGGTAGCGGCAGCATAAT 437718 31 100.0 34 ............................... AGTTCACAAGCAAAGAGATTCAATGCGCATCTTC 437783 31 100.0 34 ............................... CGGCGGGGCAGGAGTTGTGGACGTTGAGCGGTGA 437848 31 100.0 34 ............................... ATCAGGGAAATGTTGCTGTCTGCTTACGATGTGG 437913 31 100.0 33 ............................... TGTCAGGGCACTTAGAGCACTTGACCGGGAGTA 437977 31 100.0 34 ............................... CGTCAACAAGTACACTCTCGGCTTCAGCGCACTC 438042 31 100.0 34 ............................... CTCTCATACAACCCGCCAAACGCATCCAGCGCAC 438107 31 100.0 34 ............................... CCCGATGGCATCACGGCACCGGCGTTCACGTCCT 438172 31 100.0 34 ............................... CAGAAGGTGGGCGGGGAAACCCGCATCATCGGCG 438237 31 100.0 33 ............................... TTACCTTCTTCTGCGAATCCCCCCGTCCTCCGG 438301 31 100.0 34 ............................... CAGTTCTTCAATGCCTCTTCCGTCATCCGTGGCA 438366 31 100.0 34 ............................... CGCTGATGCCATAGCGCACGCCCTGAAAAAGCAC 438431 31 100.0 33 ............................... TGTCAGAGCCGGCAGATTTACTACGTGCAGGGA 438495 31 100.0 33 ............................... CAATGCTGTCAATCCTAATACAGCAGAATACGC 438559 31 96.8 36 ........T...................... GGCGAAAAAGAATGGAAGTTACTTTACTTTGATTCC 438626 31 96.8 33 ........T...................... CTCGTGGAAACAGCGGTAGAACTGGCCGGATGG 438690 31 96.8 34 ........T...................... ACCCCCTCGTCATAGTCCACGGTTGCGGTCATCC 438755 31 93.5 34 ........T..........A........... AACGGATGCTGATCATTGCTCCCCCGCTGGCTCA 438820 31 87.1 0 .............G........G....C..G | G,C [438845,438848] ========== ====== ====== ====== =============================== ==================================== ================== 21 31 98.6 34 GTCGCACCCTCACAGGTGCGTGAATTGAAAC # Left flank : CCTCGGAGAAAACGATGCCTCCCTCAAGGACACGGTGACCATCCGCCACCGCGACTCCATGGAACAGGAACGCGTCGCCATCAAGGACCTGCTGCACTGGCTCATTGCCCGTGTGCGCTAACGGCGCCTTTGGCGGTTGCTGATGCCGCAAAACACTTCAAGGCCGCTCCATATTGAATGGAGCGGCTTTTTGTTTTCGGAATGGCAGAGAAAAAAAGTTGCTGGACGATAGGCCGCTGACCATCTAGCATCAAAAACAGGTTGGTGAACCAGATGGGAATCAGCAATTCCAAAATGAATTGCTGAACCGATAAACTGTTTGCGCCAACCCCAAGCTCACAGGAATTTCCCGGTAGATCGGCGATTCCTGTAAGTCCTTGAAATCAGTAAATTGACATTCTCTTCAATAAAATATAAGGCGTAAGGAATATGCATCCTGAAAGAGGTTGGCGCAAAAAGCGATTTGTACCACTAACTTTCAACGCATATCCCCTTCCGCC # Right flank : GGGACACGTTTTGGAAGGTTGTCACACCTGTATGGAAATGTAGATGTGAACATTAAACGCCAGCCTTACTGAATGGCATTTCATTAAGTATAGGTTGCTGAGAGGAGAATGGACTTGGTGCCGAATTTCTTGGAGTAATAAAGAAAAATAATAGTAGAGCTTGTATCTTTAAAAAGGGGAATTTGTGATATAAATAAACCTTCTCTCCAAGAAGAATTTGTTGTTGAAGTATGGCAATAGGATGTTAGGTTTCCATAGCATTTTGCATCAAGAGAGGGTTAGACGAAATGATTAGAAAGTGTTTGGAGTCGGAACTGGAAACAATTTATGAAATTATCAATGATTCAGCCGTGGCTTATAAAGACAGGATTCCTGCCGACAGATGGAAGGAACCTTACATGCCCATGGATGAATTAAAAGAGCAGATCAGGGATGGCGTGGTGTTCTATTGTTTTGAAGATAAGGGACGCCTTCTTGGCGTCATGGGGATTCAGGACCGG # Questionable array : NO Score: 9.19 # Score Detail : 1:0, 2:3, 3:3, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCCTCACAGGTGCGTGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCACCCTCACGGGTGCGTGGATTGAAAC with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-3.30,-3.50] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [51.7-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.78,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 447856-448891 **** Predicted by CRISPRDetect 2.4 *** >NZ_PJKM01000002.1 Akkermansia muciniphila strain BSH01 scaf-2, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ================================== ================== 447856 33 100.0 34 ................................. GTGTTGAATGGTTGGGAAATTAGCGGGAAAGTAG 447923 33 100.0 34 ................................. CAGAAGAATTTTCCGGAGGATGCCGAAGAGGGGA 447990 33 100.0 34 ................................. TTCATCCGTTCCGCAAGTAAAACCTACGTCATTT 448057 33 100.0 34 ................................. TGGATTGCTCAATTTGCCCGTAAACTCCCTAACG 448124 33 100.0 34 ................................. AGGAGGTGGATTTCAAGGAGACGGATAACCGGGT 448191 33 100.0 34 ................................. AGGTTGTACGAAAGCGCACCCTGAGCCATCGCCC 448258 33 100.0 34 ................................. CGTACACTAATTGTCATACGGTAGCAGTCCTTAT 448325 33 100.0 34 ................................. CGGCGTCATCATGCCCTCTACAAGCTGGGCAATG 448392 33 100.0 33 ................................. TGAGCGCATGAAGGCGATTGATCTGGATAACAA 448458 33 100.0 34 ................................. GTAAACTCCCTGATGGAAAGGAATGGGTACTCTG 448525 33 100.0 34 ................................. AATCCAAACATCCCGCCCGCTTGGAAAAAATGAA 448592 33 100.0 34 ................................. AAGGAACAGGAAACCCTGGATGATTCAGTAAAGA 448659 33 100.0 33 ................................. GGGAAAGTCCTGCACGACGGCACCCTGGACCCG 448725 33 100.0 34 ................................. CGTGATTTCCGGTACGGATGCCCGCAAGTAATCA 448792 33 100.0 34 ................................. ATCCCGCAGTGGCAGCAAAAGAAGGCCCAGGACG 448859 33 100.0 0 ................................. | ========== ====== ====== ====== ================================= ================================== ================== 16 33 100.0 34 GTCGCACTCCGCAAGGAGTGCGTGGATTGAAAC # Left flank : CTTAGCCATGTATATTCTCATTACTTATGATGTAGCTACGGATGACAAGGCCGGGGAGCGGCGGTTGCGTCAAGTTGCCCGCGCCTGTGAAAATATCGGTCAGAGAGTGCAGAATTCCGTGTTTGAATGTGAGCTGGCTCCGGCCCAATTGGTTGACATCAGGAACAAGCTGCTTAAGATTATCGATAACGAGAGCGACAGCCTGAGAATTTATCACATGGGGTCCAATTGGCATCATAAAATAGAGCAATTGGGCAAGGAGAAGAGTTTCGACATTTCCGGCCCTTTGATCATTTAAAAGCTGTCTGAGCACGGCCTTTGCGCCAACCCCAAGCTCACACCAATTTCCCGGGAGATCGGCGATTGGCGTAATACATTGGGAATGGAAGATTGACAGATGAATACTTATAAGAGAAGGCTAGGTGATGATGGCCTTCTCCGGGAGGTTGGCGCAAAGTATCGTTTGCGCTGTTGAATAACAATGTATATGGTCAGGCGCA # Right flank : CTGATTCTGCCGGGCTCCGGATTCCATTTTTTCATAATGTCACACTCCGCAAGGAGTGCATAACTCTTCCTAAAAATGAAAAGCTCTCCAGGCTTGTTTGGTCTGGAGAGCTTTTTTTCGGGTTTCGTTGTTTATTTTTCAGCCGGGGGCTGCCGGTTCAGATCGAGTTCTGCGGGAGGGAGGGACTGGAGCAGGGTCAGAATGGGGTCCTGCGGTGCGGCGTCCGCTTCCCGCTGGCGTTTGAATTCCTCCTCTTCCTGCTGGAGGGCCGCCAGTTTGGTATCTTCCACCAGCGCCTTGAATTTGTCCGCCTGGGAGTATTCTCCATCCGTATCCCGGAAGACGCGGGCCAGCCAGCGGCGTTTTTCTTCCGTGCTGAGCAGGGGCTCTTTCATGGGCTGGGGAGGGTGTTTTTATCCAGCAGGTTTCCTGCAAGCTGTTCCCCATCCGCGGTGGGGCGGTAGACGTAAGGGCGGCTGTCCCCGAAGCGGTTGATGTAT # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCCGCAAGGAGTGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCTCTCCGCAAGGAGGGCGTGGATTGAAAC with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-7.00,-5.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [51.7-51.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.74,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //