Array 1 67010-65518 **** Predicted by CRISPRDetect 2.4 *** >NZ_HG313790.1 Lactobacillus acidophilus CIRM-BIA 445, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =========================== =================================== ================== 67009 27 100.0 34 ........................... TAAGAGAAAACGGTGGTTTCCTCTTATTTTTATG 66948 27 100.0 34 ........................... TCATTGAGACACACATTGCGACGACTAAACTCTG 66887 27 100.0 34 ........................... TTTTAATGAAAGGTGCTAGTTTTGTGACACTTTG 66826 27 100.0 34 ........................... TGATTTTCCAGATTCGGCTACTATTTTGGCAGAG 66765 27 100.0 34 ........................... CGTCATAAATTAGCTTTCTGCCCTTTTGCGTCCG 66704 27 100.0 34 ........................... TGCTGCTACGAGCGCTTTTGGTCACATTAAAGAG 66643 27 100.0 34 ........................... TCATTGATGCACCGGTACTTAACTCAAATCAAAG 66582 27 100.0 34 ........................... TGACTACGATATTTTCTTTTAATTATATCTTGGG 66521 27 100.0 34 ........................... CAATATCATCAGCATTTTTCACACCAGAAAATAA 66460 27 100.0 34 ........................... CGATTTGCGTGGCAAATGAATGGTTGATCTTGAA 66399 27 100.0 35 ........................... CCTTAACTAGTGCAAATTTAATATTTGGATAGCTA 66337 27 100.0 34 ........................... TGTTTACAACATCATGGTTAGAGCAAAACTTGTA 66276 27 100.0 34 ........................... TATATACATAGTTGTTTGTTTCAAAAATTGCCGA 66215 27 100.0 34 ........................... CTTTGGCCATCTTCGGTCTTAAACTTAGCTAAAA 66154 27 100.0 34 ........................... CGGGTAAACAAGTCAGAGTTACTCGCAGCAAATA 66093 27 100.0 34 ........................... TTAGGCGAAACCCCGAGAGCAATTTCAAGCACGA 66032 27 100.0 34 ........................... TAAAACGTTGAAGCTTATTGTCCGCTTTAACGTA 65971 27 100.0 34 ........................... TATATACATAGTTGTTTGTTTCAAAAATTGCCGA 65910 27 100.0 34 ........................... CGGAATGTATGATAAAAATTGGCTATTTGCCTAA 65849 27 100.0 34 ........................... TATTGATGCAACACCTAGCGCAAGTCAACCTGGA 65788 27 100.0 34 ........................... CAGGGTGGTTTTAAGTACGAGATTGACTACGATA 65727 27 100.0 34 ........................... TGGCGAGAAGCTTATGAAGATCCTAGGAAAAGGA 65666 27 100.0 34 ........................... TATATGCGACTTATTTCTTACGATGAGATTCCAA 65605 27 92.6 34 ...........A.A............. TCGATGGTAACTCTGTAGCTTTTAGAGCCTTTTA 65544 27 74.1 0 ....T..T.T.A.A........A.C.. | ========== ====== ====== ====== =========================== =================================== ================== 25 27 98.7 34 TTTTCTCCACGTATGTGGAGGTGATCC # Left flank : CGTGGTTGTCTGCAGCAAAGGCTATCCAACGCACCCAGCACCTAATGTTAAGATCGGCAAGCTGCCTGAAGGTGCTAATACCTATATCGATTACGCCAATGTTAAAGGTGATTTGGAAAACTTGACGGGTGATGGTGGCCGCTTGTTCATGGTGATTTCGGAAGCTGACAATTTAGTTCAGGCACAAGACAATGTTTATTCTTATTTAAGTAAGCTTGATCTGCTGGATTGCTTCTACCGGCATGATATTGGTAATCGTGCTTTGGGAGATTTTAATATTATATAATGTCTTAACTTAATGACATTGATAAGGCTACCCATATTTTGTTTATTTGTAATCCTGTGAATATAATAGCAATTTAAAATTATTATATGAGCTAGATATATGTAGAAGAATATTTGATATAATTGTGTCGATGATTTGGTTGGGGAAATGCAAACTAAAGAAATTTTGCTTTTTAGTAAATTTAAAATAGCTTAACGATGGGATTCCTTTAGTG # Right flank : TGAAGCACAATATTTTTAAAATAATTGGGCAAGATTTTCTCCAAAAAAGTGGAGCTACATTAACGCAGTGAAGGAAAGATCACAAGAAAAAGTCCCTAATCAGGGCTTTTTTCTTTTCCAAAAACAACATGCTGAAATAGTGTACCGTAAACTGGTAAAATAGATAAGTAAACATAGATCAATTAATAAATAAGGGGGAATAAAATGGCAGATAAAAAATTACTTCTAATAGATGGAAATTCAGTTGCTTTTCGTGCCTTTTATGCTTTGTATCGGCAACTTGATCGCTTTACTAGTCCAGATGGGTTGCACACTAATGCGATTTTTACCTTTAAAAACATGTTGGATGCCATTCTTAAACAAGTAGATCCAACTAATATCTTAGTTGCTTTTGATGCGGGCAAAGTTACTTTCAGAACTGCCATGTATAAAGACTACAAGGGCGGCAGACAGAAGACACCTAGTGAATTGCTTGAACAAATGCCTGTTATTCGTGAAAT # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TTTTCTCCACGTATGTGGAGGTGATCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.85%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-6.10,-6.20] Score: 0/0.37 # Array degeneracy analysis prediction: R [9-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.41 Confidence: MEDIUM] # Array family : NA //