Array 1 1477920-1477225 **** Predicted by CRISPRDetect 2.4 *** >NC_017576.1 Streptococcus gallolyticus subsp. gallolyticus ATCC 43143, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 1477919 36 100.0 29 .................................... ACCACCGCTTTGGAATGAAATGCGGTCTG 1477854 36 100.0 30 .................................... ACGACGTAATGAAGATGTACGTTTTTATAA 1477788 36 100.0 30 .................................... AATTTGGCTAGGAATAGCCCCACCCATTTT 1477722 36 100.0 30 .................................... ATGATAATGCTTTTGAAACCATTTATTCAA 1477656 36 100.0 30 .................................... ATATTTGCTCGTTTGCGTTTTCAATTGTCA 1477590 36 100.0 30 .................................... TTCAGCAGGCGTTAATATGTGGCGACTTAA 1477524 36 100.0 30 .................................... AACTTCCTTAGCTGTTAAACTATAGTTTGT 1477458 36 100.0 30 .................................... AGTCTAGCTGTTTCATCTAAAAAGTTTAGA 1477392 36 100.0 30 .................................... CTTTCCAGACCCCAATGATTCGGACGTTAC 1477326 36 100.0 30 .................................... TGGTCAAGGTTGTACAATTGCTGTTCTACC 1477260 36 91.7 0 .................................CTA | ========== ====== ====== ====== ==================================== ============================== ================== 11 36 99.2 30 GTTTTTGTACTCTCAAGATTTAAGTAACCGTAAAAC # Left flank : GGATGATTATCTTGATTATTCTTCTTTCATAACTATTTGTAAGACTATTACGCAAATGACTGAGAAATTTCCTAATTTTTATTGTACAATTTTCCCGTCAAATGAAAGTTATTTATATGTTACTAAAGAAACAATTGAACATGTTACCATTGTTTCAGATTTTATTGAATCATTGTTTGACTTAGATTTTATGTATGAAAGATTTATTGGTAGATACCCATCAAATAATATTCCAAGTAAAAGTGAGTTTTTGATATTACTTCAGAAAAATGCAAGTTATCTGTTTAGTGATCAGATTTCATATATTAGTTTAGGAATTTCAGATATGGTAGCCATTAAGATTTTAAATAGTTTATACCAGTATGATAAGTCTGTTGTATATCCAATACCTAAGATAGACCCGCTAGAAATAAGCTTTTTAAAGGACAGAGATTGACTTTTTTGCCTAATCAAACTATAATCGATTTGTAGGATACAAAAACTAAAAATGACGATTTGAG # Right flank : ATATGCTTTTAGACGAAATCATTTTATAATATTTAACCTTTTACCATCTTATGATGCTTTTTTCTTTTCTTGAAATGACTTCTAAAACTTTTTATAGCAACGTTTCTGTTTATCTGTTATAATAGAAATAATGATTAATTGTATAGGATTGTAAGATGGATATTCAAGAATTAAAAAAACGACAAGAGAAGATTCGTAATTTCTCTATCATTGCACATATTGACCACGGGAAGTCAACTTTGGCTGACCGTATTTTGGAAAAAACAGAGACGGTTTCTAGTCGTGAAATGCAAGCTCAACTCTTGGATAGCATGGATTTGGAGCGTGAGCGTGGTATCACGATTAAGCTTAATGCGATTGAGTTGAACTACACGGCTAAAGACGGTGAAACCTACATTTTCCACTTGATTGACACCCCAGGACACGTTGACTTTTCATATGAAGTGTCACGTTCTTTGGCGGCTTGTGAGGGGGCAATTTTGGTTGTCGATGCGGCACAA # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTGTACTCTCAAGATTTAAGTAACCGTAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: R [matched GTTTTTGTACTCTCAAGATTTAAGTAACCGTAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.20,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [76.7-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.91 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], // Array 2 1486445-1484496 **** Predicted by CRISPRDetect 2.4 *** >NC_017576.1 Streptococcus gallolyticus subsp. gallolyticus ATCC 43143, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 1486444 36 100.0 30 .................................... TGAAACAGTTACTCAAAAGGTATCTTTTAC 1486378 36 100.0 30 .................................... ACTGCTAGCACGGATCCGACTAAATACACT 1486312 36 100.0 30 .................................... AGGTCAATTGACAGAAATCAAAGGTCGTTA 1486246 36 100.0 30 .................................... TTGATTGTTTCAATATTATCAACCTCACCT 1486180 36 100.0 30 .................................... GCTGATTTTCAGGTTAAAAACATGAATTGT 1486114 36 100.0 30 .................................... ATCAAATGACCGTACTTTGGCTATTAGAGT 1486048 36 100.0 30 .................................... AAACCACTAGGCACATTGATTGGCGGAGGT 1485982 36 100.0 30 .................................... AGCTGTACGTGTCGAAGTTCAGAAAGCGGC 1485916 36 100.0 30 .................................... GCTGTAGGTTTTTACTGTGAAAATTAATTT 1485850 36 100.0 30 .................................... AAATAATAACAAAAAAGGAGCTACTGACTA 1485784 36 100.0 30 .................................... AGCACAATCATCAGAGGTGTGGTAACCATA 1485718 36 100.0 30 .................................... ATCAACAAACGCAATTTATCAACGATGCAC 1485652 36 100.0 30 .................................... TTAACTTGGGCGGTTGGCGATGCATCTATC 1485586 36 100.0 30 .................................... CAGAAGATTATATGCAAGAGCTTAAAACGC 1485520 36 100.0 30 .................................... CGGAAAATCATTTAACTACATTTCAGCTCT 1485454 36 100.0 30 .................................... AGCTAAAACTTTTAACTCTGGTGGCGACTT 1485388 36 94.4 29 ..................................CA AACAACGTTAGTGTTAAAGCTTTTATACA 1485323 36 100.0 30 .................................... ACCATTCTTCAAATGTCTGTTTGAGTTCAA 1485257 36 100.0 30 .................................... ACCATTCTTCAAATGTCTGTTTGAGTTCAA 1485191 36 100.0 30 .................................... ACCATTCTTCAAATGTCTGTTTGAGTTCAA 1485125 36 100.0 30 .................................... CACTTGGCAACATTCAACTTCAAATTGAGT 1485059 36 100.0 30 .................................... TTAAGTGGTGGTAAAGGGAAATCTTCATCT 1484993 36 100.0 30 .................................... AGCTAACATTGACAGCGACATAAAAAATAA 1484927 36 100.0 30 .................................... ACAAGCAGGTGTTAACCTCTTGCAAACATT 1484861 36 100.0 30 .................................... ACCAAAATTTAGAGTATGGGATAAACTTAC 1484795 36 100.0 30 .................................... AGTAATGAGGGATATAATTCGTCATGGGGT 1484729 36 100.0 30 .................................... CACAAAACAGGATAAACTAACTGCTGGTCA 1484663 36 100.0 30 .................................... AACACCTCAACACCAATCTTATGGCACACG 1484597 36 100.0 30 .................................... TAATATTGTTAATAATAAACTAACTGTTAA 1484531 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 30 36 99.8 30 GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC # Left flank : TATCCAGCAATTTTTCACAAAGAAGGCGATGGAAGTTTTTGGGTAGAATTTCCAGGATTTGGTGGTGGTACCGAAGGTGATGATGTCGAAGAAGCGATGAAAAATGCTCGAGAAATGTTAGAAAGCTCATTGGCTGCTTATCTAGATGAAGGTTTAGAGCTTCCAAAGGTTGTTAATATGAGTGAATTATCAGTTGAAGATGGTTTTATCACTTTAATTCAAGCAGACCCTTCCCCATATTTAAAAAGTACCAAAGCCATTCGAAAAAATGTTACTGTTCCAGAATGGTTAGTCAGATTAGCAGACCGTGAGAATGTGAATTACTCGGAGGTTTTGACACAAGCTTTAGAGAAAAAATTACAGCTTTAAATTGCTATAAACGTTGTAAAATCAAGGTTTTTGAGGTATAATATAGTTAAAATAATGAACCATTCGAGGCTGAAGTCTAGCTGAGACGAATGGCGCGATTACGAAATTTCGTGAGAAAAATGGTCCACGAG # Right flank : TTCTGGTATTTAGGATTTAGCAGAAGTAGAATGCCATGAAACTTACTAAAGTTTTAGTGAAAACGCCTTTCAATATTTTTCAAAAGTTTTCTTTTATGGTAAAATAAAAACTGAATTTATTTAGATAGGTTGGATTGTTTACATGGAAAAAACTTTCTTTATGATTAAACCAGATGGCGTGAAACGCGGGCTTGTTGGTGAGGTGCTTCACCGTATTGAACGACGTGGTTTTACAATTGAAAAATTGGAAATGCGTATGGCAACTCCAGAATTATTAGAAAAACATTATGTTGATTTGGTTGACCGACCATTTTTCCCACTAATCGTTGATTTTATGACAAGTGGTCCAGTAATTACTGGTGTTATGTCTGGAAATGAAGTCATCACTTCATGGCGTACGATGATGGGAGCGACAAATCCTAAAGAAGCTCTTCCAGGAACAATCCGCGGAGATTATGCTCAAGCACCAGACGAAGGTGGCGCAACATTTAATATTGTTC # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:58.33%AT] # Reference repeat match prediction: R [matched GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-0.20,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [68.3-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,4.87 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //