Array 1 338-4 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADLRA010000074.1 Nocardia farcinica strain N-4 NODE_82_length_343_cov_0.930556, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 337 29 100.0 32 ............................. GCGTTGCGGAACCGGATGAACGACTCCCCGGT 276 29 100.0 32 ............................. GCGGGCGACACGATCGACCCCGTGGTCGCCCT 215 29 100.0 32 ............................. CGTGCACCGCGGGGGCGAACTCGTCGGTCACG 154 29 100.0 32 ............................. GCCGACTGCGTCGGCGTGAGGAAAGATCGACG 93 29 100.0 32 ............................. GGCGCCGACGGGGCGCGCTGGCACCTCACCGA 32 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 6 29 100.0 32 GTGCTCCCCGCGCACGCGGGGATGAGCCC # Left flank : TAGGC # Right flank : CTGC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGCACGCGGGGATGAGCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [3,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGGTCCCCGCGCACGCGGGGATGAGCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [1.7-3.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.87 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 169058-170429 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADLRA010000008.1 Nocardia farcinica strain N-4 NODE_8_length_282618_cov_50.423514, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 169058 29 100.0 32 ............................. ACGATCAGCGGCTGTGTGCGCGAACCGGTGCC 169119 29 100.0 32 ............................. CGCAGTCCATTCCGCGCGATCCCGCGCAGCAA 169180 29 100.0 32 ............................. ACCGCGGGCGCTGCCGGGGATCTCGTCGTCGA 169241 29 100.0 32 ............................. TCAGCCTTGATCTCTTCGCACTGCTCCCTTGC 169302 29 100.0 32 ............................. CGGAAGCGGGTCCGCCACCGCGGGATTCCCGG 169363 29 100.0 32 ............................. GATTGCACGATGCCGTCCCGCCCGATTCCCTC 169424 29 100.0 32 ............................. GCCGCATCGTCCAGGCCCGCGCCGAGGACCTT 169485 29 100.0 32 ............................. GCCTCGCCGAGATCGCCGAGCAGCTGCGCATC 169546 29 100.0 32 ............................. ATCACGCCCGTGCCCTCGGCGGCGGGCAGGAA 169607 29 100.0 32 ............................. TCTCCGGCGCGACGCACCACCGTGGCCACGTC 169668 29 100.0 32 ............................. TGGCCGCGCCAGCACTCGCGGTGGTGGCTGAT 169729 29 100.0 32 ............................. CGGCGACCGAAATCCTCGCTCCGTCCAGCGTT 169790 29 100.0 32 ............................. TTCCGCATTGATAGATTCCAGGAACGCGAACT 169851 29 100.0 33 ............................. CGCCTGCGCAAGCGCGCCGCCGATCTCGTCGGC 169913 29 100.0 32 ............................. ACCGACACCCCGCCGGGCCGAATCCGCACCAG 169974 29 100.0 32 ............................. GCCAGCGCCAGCAGTCCGCCCATCACGCCGCT 170035 29 100.0 32 ............................. CGGGAATCGAGCGGCCGTTGTGGAAGGATCGG 170096 29 100.0 32 ............................. TCACCATCGCCACGCTCACGATGCCGGTGCTG 170157 29 100.0 32 ............................. TCGTGGCTGGCTGCGTAGCGGGCGGTGTGGGT 170218 29 100.0 32 ............................. GCTTCGGCCTCGCAGCTCGCTGCCGCCGAGGA 170279 29 100.0 32 ............................. TGCTCGACCCCGGTGCGCGTGAGGCACCAGAC 170340 29 100.0 32 ............................. CAATGTCAGGTTTTCCAACATTGGACCGCCCA 170401 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 23 29 100.0 32 GTGCTCCCCGCGCACGCGGGGATGAGCCC # Left flank : ACCCGAACACAACCGAGCCACATCCTTGCCCGCGCCATGCGCCCGCACCAGATGCGCGGTGATCTGGTCCAGATCCAGATGCTGGGTGTCGATCAACTCGGTCTCCGGCGCACAGTGCGCCAACACCGCCGGATCGAGATAGGTCCCCGCGTAGAGACAGACAGGACTCGTGCGCAGCAGATTCACCGCACGCACGGTCAGCAGGTCCGCCGCGCCCGGCCCGGCCCCGATGAAATGCACGGTCATGGGGGTGAGTGTAGGGATCTCCGGATGGGCGGTCCGAGCTGCGGTGGTCGTGGGTCGTCGCCGGACCAGGCACGTAGGGCGGGTCGGTCTCTCACGCGACCCTTGGGAAGATCGCCGGCAACTGAAATGGGAATCTCGCAGGATCGGCGACGTACGATGACGGCGGCCTGCCGGTCTTGCCCCTCAGGGAGGTACATCGGTGAAAAGTGAATGAAAAATGGGGTTGGGGGCTGAGAACTCGCAGGTCAGGAAGT # Right flank : CGTCACCAGAGCTAACGGGGCGGTCCGGGTGGTGGTCACCGACGGGAGGGACCGGATTCGGCGCGGTGGGGTCCTCCCGAATCAGGCGGTGGCGTCGAAGTGCGCGATCACCTTGGTCGGGCGCAATCGCACGACCAACTCACCGGGCACCGCGTTGCGCCGACCGAACTCCTCGGCCCGCTCGGCGCCCATGTAGCGCCCGCCCAGCGCGGTGGCGGTGCGCAGCAGCTCGTCCGGATCCTCGGAGAGCGTGACCCGTCCCTGCACCTGGACCGAGGCATACGGCGGCTCCTCCAGGTCGACACACAGCGCCACCCGATCGTCGCGCACGAACGCCTTGCCCTTCGCCGTGTCGCGGCCGGTGTTGAATACGATCTCGTCGCCCTCGACGAGGTACCAGATCGGTGTGACCACAGGTCTGCCGTCCGACGCGACGAAGGCGATCTTGCCCGTCCGCGTCCCGTGATCGAGGAACTCGCGCACCTTGGGATCCGACAATG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGCACGCGGGGATGAGCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [3,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGGTCCCCGCGCACGCGGGGATGAGCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [50.0-30.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 21-293 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADLRA010000110.1 Nocardia farcinica strain N-4 NODE_131_length_293_cov_0.680723, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 21 29 100.0 32 ............................. TGCGCCGGGCAAACGGCGGTCGAGACGTCCCG 82 29 100.0 32 ............................. ATGTGTTCGACAGGTTTGCCCAGAGATCGCGA 143 29 96.6 32 .........................C... CAGCCCGGCAGCACCGAGAGGATCTGCTCTCG 204 29 96.6 32 ........................C.... GGCGTGCCGCCGCCTTTCGCCAGCGTGGCGTG 265 29 96.6 0 ............................G | ========== ====== ====== ====== ============================= ================================ ================== 5 29 98.0 32 GTGCTCCCCGCGCACGCGGGGATGAGCCC # Left flank : CGTGTGAGATTCCAGCGAATG # Right flank : | # Questionable array : NO Score: 5.88 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:0.92, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGCACGCGGGGATGAGCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [3,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGGTCCCCGCGCACGCGGGGATGAGCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [16.7-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 10494-11925 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADLRA010000022.1 Nocardia farcinica strain N-4 NODE_22_length_12730_cov_43.790605, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 10494 29 93.1 32 .......G..............C...... AAGAAATATCGAGTCGCCCTGTACTCGACCAT 10555 29 100.0 32 ............................. CGGTTGCGCGCCATGCAGAAGGGCGACGTGGT 10616 29 96.6 32 ............................A CCACCTGCGCCTGCTTGACCTCGACGCCGTGG 10677 29 100.0 32 ............................. CCCGGACCCGCCGAAGGCCATACCGATACCCG 10738 29 96.6 32 ......A...................... GGGACTTTACTGGTTTCGCTTTCGATCCCCGT 10799 29 100.0 32 ............................. GGTCGATCGGGGGTGGGTGGGGGTGCTGGTGA 10860 29 100.0 32 ............................. GGCAACGGCACCGGCGAGAACTTCACCGGCAT 10921 29 100.0 32 ............................. CGCCGCAGCCTCCATACGGCAAGCCGCCCCAG 10982 29 100.0 32 ............................. CCATCGGCAGGGTCGCAGCCCTCGCAGTCAGG 11043 29 100.0 32 ............................. CCCCACCGGTCGGACTCGAGCGCTTCGGGGTG 11104 29 100.0 32 ............................. CCGAGCGCCCGCAGGACAGCGAGGTAAAACGG 11165 29 100.0 32 ............................. GCACACCCCTCCACCTCGAGGTCCGGGTGCAG 11226 29 100.0 32 ............................. GAATCGGCACGGTCGGGGTGGTCGAAGGTCAG 11287 29 100.0 32 ............................. CAGATCGAGGTCGGGTCGATGGGCAGCGCCGC 11348 29 100.0 32 ............................. GACCGGATGGCCTTGAACGCCGCGTCCTCGCA 11409 29 96.6 32 ............................A CAGGGTCTAGGTACAGCTGGCGTACTGCCTCC 11470 29 100.0 32 ............................. TCGCTGGCCGCGTGGTGCCCGCGCTGGTGGGA 11531 29 96.6 32 ..............A.............. ACCTTCCAGCGCCTGGAGAAGGGAGAGCGCAC 11592 29 96.6 32 ........................A.... GAGCAGGTACTCGACGTGCTCGGGCTGCGGGT 11653 29 100.0 32 ............................. AGTGTGGTCGTGCAGCCTGCCGGACCAGCGGG 11714 29 100.0 32 ............................. CGCGTCGTGCTCGGCGGCTACAGCCAGGGCGC 11775 29 100.0 32 ............................. GGGTAGACGCCGTCGGCGTCGAGATCGATGTC 11836 29 100.0 32 ............................. ACCGAACGCATGTGTGCCGCCGCCGTGATCGC 11897 29 86.2 0 ..............T.......GA....G | ========== ====== ====== ====== ============================= ================================ ================== 24 29 98.4 32 GTCGGCCCCGCACGCGCGGGGATGGTCCC # Left flank : AAATCCCCCACACCGCTGAACCAGAAACCACCACCGCTCACGACATACGCATCATCGCCCGCAACCGAGTCGCCTTCGGCAAGAAGAAGCACAACCGACAGGCCGGGACCGTCACCCTCCACACAGCTACCTATGAAGGCAGACTCGAAGTAACCGACCCCGAACGCCTCACCACAGCCCTGCTCAACGGAATCGGACCAGCCAAAGCCTACGGCTGCGGACTACTCACCCTGGCGCCGCTGCAAAGACAATGACTTCCCGATACCGGAGGCACAGCCTCCACCAGTCCACACGAGCGACAAGCAAGATCATGAGCGTCAATCGTCGACCACCGCCACATCAAACGCGACGAGAACCCGATCACCGCGATCAACCCGATTCGCACAACCAGAACTGGTGGGATGCTGGCCGCCGGTCCCTCTACCGGCCTCCCGCGCCACCCGCAGAGCAAAGTGAATGAAAAACGCGCCCCTCGCGAATATAACAGCAGGTCAGGAAGT # Right flank : GTGGCAAACCGGCGATCTCGGCCCAGCTTCGGGTCAGGCACGAGCATCACTGACTGAGCGGCCGAAGCAGGGCTGATTCCGCCGCGCAGCGGCCAGCCGACCCCCGACGAGGCATTGAGCTGCCCCGCATCGCCCTCGAAGGCAGCAACCAGACCGAGAGCCGAACGGGCGACAGCGATCCGCTAGCCGCCGCCACTGGCCAGCGTGCTCAACTGCGCCCCTAATTGGCCAGTCCGGGGTTCGCATAGCCGACCTCGTACGCGCGATCGAGGAAAATGGCGACTTTGGAGGACAAGCACGCGATCAGCGCGATCGCCTCGCCTCAGTTGGACTGATGCGGGTGGGCCCGAACACTTCTCAGGCCGCACTTCGCCCGGTATGGGAGAGGCCGATCGCCTCTGCCAACGGCACGGTGGCCGCCATCGGGCACGACCTGGAGCGTATCGACAGCGACCTCCAGGTCATCAGGAGCGATACCCCAGCCTTGCGACGACAGCTGT # Questionable array : NO Score: 6.18 # Score Detail : 1:0, 2:3, 3:0, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGGCCCCGCACGCGCGGGGATGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGGCCCCGCACTCGCGGGGATGCTCCC with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [4-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [48.3-35.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 172-2226 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADLRA010000002.1 Nocardia farcinica strain N-4 NODE_2_length_1037998_cov_46.358163, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= =============================================== ================== 172 29 100.0 32 ............................. TCCGGCACGCTGACGAGGGTCGCGGCGACGAC 233 29 100.0 32 ............................. CGCCACCAGCGCGAGCCGCACCTGCGGCGGCA 294 29 100.0 32 ............................. GGCCCGATGTCGTCGACGCGCCACCGCAGCAA 355 29 100.0 32 ............................. TGTTCCGGCGCAATGGCGCTACGACTGGCTGC 416 29 100.0 32 ............................. GTGCAGGTGGCCTCGCAGCTGGTCACCAACGG 477 29 100.0 32 ............................. TTCGCCTCGATCCGCGCGAGCGCCTGCGCCGA 538 29 100.0 32 ............................. TCTTCGGCTTTCGCGCGGTCGAGGAATAGGCG 599 29 100.0 32 ............................. GCGTTGCGGAACCGGATGAACGACTCCCCGGT 660 29 100.0 32 ............................. GCGGGCGACAAGATCGACCCCGTGGTCGCCCT 721 29 100.0 32 ............................. CGTGCACCGCGGGGGCGAACTCGTCGGTCACG 782 29 100.0 32 ............................. GCCGACTGCGTCGGCGTGAGGAAAGATCGACT 843 29 100.0 32 ............................. GGCGCCGACGGGTCGCGCTGGAACCTCACCGA 904 29 100.0 32 ............................. TGCTCGATTGCGGCGTACCGCAGATGGGCGGT 965 29 100.0 32 ............................. ATCGCCGCCTCGCTGCGCTACACGGTGAGCCG 1026 29 96.6 32 ............................G CTCCAGGCCCTCGATCCCCATCTCGCCGAGAA 1087 29 100.0 32 ............................. GTGACAAACGTCCGGGCTGAATCGGCAGACGG 1148 29 100.0 32 ............................. GACGCACTGGACCGTGTGAGATTCCAGCGAAT 1209 29 100.0 32 ............................. TGCGCCGGGCAAACGGCGGTCGATACGTCCCG 1270 29 100.0 32 ............................. ATGTGTTCGACAGGTTTGCCCAGAGATCGCGA 1331 29 100.0 32 ............................. AACGGCAGGGCCCGCTGGGGCGATCAGGAATA 1392 29 100.0 32 ............................. CAGCTCGGCAGCACCGCGAGGATCTGCTCTCG 1453 29 100.0 32 ............................. GGCTTGCCGCCGCCTTTCTCCAGCGTGGCGTC 1514 29 96.6 32 ............................G CCTTCGGCAGTCGTACGTATTGCTCGGCGCAT 1575 29 100.0 32 ............................. GTGCGCACGGCGGCCAGTTTCTTGCTCAGCGA 1636 29 100.0 32 ............................. CAGCCCTTCACGGTGTCGATCGCGCTGCCGAG 1697 29 100.0 32 ............................. TGCCCGTAGTAGTGCCGTGCCATGCCGCGAGG 1758 29 100.0 32 ............................. GGGTCGAACCACCGAAAATCCAAGCAGGGGTT 1819 29 100.0 32 ............................. TGTCATGTCGGGTCGTCTTCATCCTGGTGGCC 1880 29 100.0 32 ............................. CCGCCCAGTCGCGCTGAGTCGCTGAGGCGGCT 1941 29 100.0 32 ............................. GCATCGGCGGTCGCCCTCGAAGCGCTGTCCAC 2002 28 96.6 32 ....................-........ CAGCCGTCGTTGAGCTCGTTGCCGATCCGGCC 2062 29 100.0 32 ............................. GGATGCGCTTGGAGACGGTCACAGCGGTACCA 2123 29 96.6 47 .........................A... CCCATCTGCTTGTAGGAGGACCGTCGTTTCGGTGCGCCGAGCTTGAC 2199 28 72.4 0 A..T....G..A..T..-C........A. | ========== ====== ====== ====== ============================= =============================================== ================== 34 29 98.8 32 GTGCTCCCCGCGCACGCGGGGATGAGCCC # Left flank : CCTACCACCGGCGGCGCCGGCAGACCGGCCTCGGGCGTTTGACGCCCGTCGAATACGAAGTAATCATGACCCCACCGGCCAGTCAGGCCGCGTGACCGAACCTGTCACCGAATCCTGCATCAGTCCCGGGGATGAGCCCGCTTGCTTCCATTGTTCACTACCTCCAATGGTG # Right flank : CGGTCCGCCGATCCCGTTACCGCCCGATCCGCGTGCTCCCCCCGCACGAGGGCGACCCCTCGGCTGGCAACACCACCGCGCCGCGTGTTGCCCGCGCCTGCGGGCGGTAGGACACACGACGACCGAGCGGCCGAGCGTTCCAAATTTTCTGGTTTAACTCCTGCAAAATCGGGTATCACTTGCTATCCTCGCTCATGTCCCGCCGCCCAGTTCGCTCGCTCAATCAAGGTTGTCGGTGGGGTTCGTTACCGTGATCCGTGACAGGGGTGGAACGATTCGAGGGGGAATTCGGTGCTCGGTACCGCGACCTTGTCTGCGTGGGCGAAGAGTGATCGCGAGGGTGGAAGCCTCTCTCTCGTAAGACATCTCGCTGATTCCGGTGAGGTCGCGAAGTTGGTCTGGGACCGTTGGCTGCCGGCCCATACACGGCAGCGGATCTCGGTCGGCCTCCCTGGCGGCGAAGCGGATGGACGGACGCTGCTCGTCTGGCTGGCGGCTAC # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGCACGCGGGGATGAGCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [3,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGGTCCCCGCGCACGCGGGGATGAGCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-16] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [45.0-23.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 11411-14594 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADLRA010000002.1 Nocardia farcinica strain N-4 NODE_2_length_1037998_cov_46.358163, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ====================================================================================================================================================================================================== ================== 11411 28 100.0 33 ............................ CTGCCGGTGCGCGAGCGCGTGAAGTCCCTCGGC 11472 28 100.0 33 ............................ CGCCGATCATTCTCGACGCCGGGCAGTGCTGGG 11533 28 100.0 33 ............................ CGCCCAGCTGCCTTCGGGCTTGTAGCCGCCGTT 11594 28 100.0 33 ............................ CCCCTGTGAGCCAGCTAACTTTTCGCGATTACC 11655 28 100.0 33 ............................ CTGCTCCTCGCTCATGCCGGCCGCGATCGCCTT 11716 28 100.0 33 ............................ CTTCAAGGACATCGCCCTGTCCTACAAGGACGT 11777 28 100.0 33 ............................ CATGTGCACTCGCGCCGCCCTGTAAGCGGCCAA 11838 28 100.0 34 ............................ CCGGTTCGGCACCTACCTACGTGAGTGCTCGGTG 11900 28 100.0 33 ............................ CGAGAGACGGCAGCGAGCGAGACGAGACATGTA 11961 28 100.0 33 ............................ CAATGTTTCCTTATCGTCTGATCCTCACCGGAA 12022 28 100.0 33 ............................ TTGGGCAAGGGCGACTACACGGTGTTCGTCGAC 12083 28 100.0 33 ............................ CGGCAGTTCCACCTCCGCCGCCGCGCATGCAGC 12144 28 100.0 33 ............................ CAGCACGATGCCAACGGGAAGTTCCTATATTTG 12205 28 100.0 33 ............................ CGGTCGAGTTAAGCCCCGTGTCTACAGTCCTCC 12266 28 100.0 33 ............................ CGAAGTGCAATGCGAGATTGGCAAAACGTGTCA 12327 28 100.0 33 ............................ CTGAACAATCTTCTGCGCCAACGAATCAAAGGA 12388 28 100.0 33 ............................ CAATTCCTGGTCCTTGTCGGCGGTCGCGGCCCT 12449 28 100.0 33 ............................ CTACGGCAGCATCCACCGGTACATCCTCGGGGC 12510 28 100.0 33 ............................ CATCTACCTGGCCACCGCGATCGGCGCGAACAC 12571 28 100.0 33 ............................ CGGCCAGAACAAGACCAAGGTCGGTGGCGCCGT 12632 28 100.0 33 ............................ CGGGGGCTCGATGACCTGGTTGCGGCAGGTGTG 12693 28 100.0 33 ............................ CACCGTGATCAACAGATCCCGCACCTCGGCATC 12754 28 100.0 33 ............................ CCGGCGCACCGCCTAGGCGTGTGTCGGCTGGAC 12815 28 100.0 33 ............................ ATCGCGGCGTTCGCCGACCAGATGCGGCCGGTG 12876 28 100.0 33 ............................ CCGGCCGACGGCCGGGGTGTCGAGCAGTGCGGG 12937 28 100.0 33 ............................ CCGTTGACCGATTACACGATCAAGCGCGACTAC 12998 28 100.0 33 ............................ CCCGGAGGAGCCGGACATGAACGACCAGTGGAC 13059 28 100.0 33 ............................ CGATGCAGCCCTGGAACGGGACCGTCCAACCGT 13120 28 100.0 33 ............................ CGTTGGAGGGGTGGAGTCGAATCCATCTGAGAT 13181 28 100.0 32 ............................ CCCCCGCCATAGACCATTGGTACTCGCTCCAC 13241 28 100.0 33 ............................ CGGTTTTCGAGGCGATTTCACGGAGACGGACAA 13302 28 100.0 33 ............................ CCGGGCACGGTCAGGGTGCTCGAAAGTAAGCGA 13363 28 100.0 33 ............................ CACCTACCCGCAGTCGGCGGAGCTGATCCACTG 13424 28 100.0 33 ............................ TGGCTCGCGTCGTCGTACGGCCAGGCCACCGCA 13485 28 100.0 33 ............................ CGTGAGCGTCTGGTCGGCCACGTTGTCGGCCGG 13546 28 100.0 33 ............................ CTTCTCCACGCGGGAGAGAGCGGCGATGGTGTC 13607 28 100.0 33 ............................ GGCCCTGCTCGACCGCATCGAGCACCTGGCCGT 13668 28 100.0 33 ............................ CCGGAGGACATCATGGCCCAGTACAACGTCGAC 13729 28 100.0 33 ............................ TGTTTCCGGTACTTCCGCAGGACCGGGGGTATT 13790 28 100.0 33 ............................ CGAGATGGCCGAGGATCGCTCCACCGAAACCGA 13851 28 100.0 34 ............................ CGATGTCGACGCCGTGCTCGCCGCGATCGGTCAG 13913 28 100.0 33 ............................ CGCCCACGACTACCAGCGCACCTCGGTCGACGG 13974 28 100.0 33 ............................ GTCGGGGTCGGCGGTGTTGTGGCCCCACAGCAG 14035 28 100.0 33 ............................ CCGGACGGCGGCCGGGGTGTCGAGCAGTGCGGG 14096 28 100.0 34 ............................ CCGTCAGGAGACCGCAGCATGACCGACCTGACCC 14158 28 100.0 33 ............................ CCCGGCAGGGTGACGCCGCTCCAGGTGCTCGAC 14219 27 96.4 33 ....................-....... CCGCCGCCGGTGCCCTACGCCGAGCTGAAGGTG 14279 28 100.0 33 ............................ CGACCGGGCGCAGGGGCGGATTGGTGGGTGTCG 14340 28 100.0 198 ............................ AAAGCTCTGTTCACCACCGACTGGCCGGACTGGCGATGCGGACAGGCGTCAGGACCAACTCGCCCGTGATCCATGATCTCTTGAAGGGCCGCCCGGCGAGACCATCAGGCGCTCAATGGTTGTGAGCGCAGAATCGGTGGATGGAGAAGGGCGGCTGGACCGCGGCGGTACAGCGCCGCCGGCCGCCCGCCATTGCGG 14566 28 71.4 0 ...G..TG.....CG.TC..A....... | G [14593] ========== ====== ====== ====== ============================ ====================================================================================================================================================================================================== ================== 50 28 99.4 36 GTGCTCCCCGCGCGTGCGGGGATGAGCC # Left flank : AGTGGGACACCGACATCGTCGAGCTGTGGGACCGCAAGGGAAACGTCGCGGGCGGAACCTCCTACAGCGACGAGGACGTCCCGTGGTAGTGCTCGTACTCAGCGCATGCCCCGCCGGCCTCCGCGGCCACCTCACCCGGTGGTTCCTCGAAATCAGCCCGGGCGTATTCGTCGGGATCGTCAGCGCGCGCGTGCGCGAACTCGCATGGCAGCGAGTCGTCGAACTCGCCAAGGACGGCCGCGCCATCATGATCCACTCCACGAAAGGAGAACAGCGCCTCGCGTTCACAGTCCACCGACACGACTGGGAACCGGTCGACTTCGACGGCCTCCACTTGATGCGCCGGCCGCACACCAGCGCCGTCAGTTCAGGAGGCGCACGGGCCGGCTGGAGCAAGGCCAGCCGGTACCACCGAGCCGCCCGGAAACGCGCGGCCGGTGGGGGTGCGGAAAGTGAATGAAAAATGGGTGATCGGCTTGGAAACGTGCAGGTCAGGAAGT # Right flank : CCCCGTCGGTGCCCGTGATCTTACGATGAAAGTTACGTTGATCCAACGGCTTTCCCCAGACGATCTCGTACACACGGCGTAGTTCCGCTACCGTGAACTCCGGCCTGCAGAAGCGGGTTGCGAGAGTGGTGTACTCGAGCTTGCTCCGAGCGCGTTCGACCGCGTCGGCGACGATTCGCCCGTGATCGAAGGCCAGTTCGGTCCGCTCGTTCAACACCCGCTCCACGGGCATCCAGGTGGCCGAATGCGCGTCCCCGCCTGCTTCGGGCGCGGGGAGGTCTGGCACCAGTGCCAGGTAGCACACCGTTACGACGCGCCGTCGCGGATCGCGGTTCGGTGAGCCGTAGGTCTTCAGCTGTTCCAAATGCGCGCGATCGAGGTCTAATCCGGTCTCCTCGGCCAGTTCTCGTTCTGCGGCGGCGTCCAGGTCCTCGCGGTCGTTGTCGAGGAAGCCTCCCGGTAGGGCGAGGAAGCCCTGCCATGGTGGGATCCCCCGTTCC # Questionable array : NO Score: 5.92 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:-0.30, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGCGTGCGGGGATGAGCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCTCCCCGCGCGTGCGGGGATGAGCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-20] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [48.3-45.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 128316-129624 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADLRA010000002.1 Nocardia farcinica strain N-4 NODE_2_length_1037998_cov_46.358163, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 128316 28 100.0 33 ............................ CGCCTGGACGAGCGTTTCCATCACTACCTGCTG 128377 28 100.0 33 ............................ CCCGCCACGGCTGACCGCCGAGGAACTGGAGAG 128438 28 100.0 33 ............................ CCCGCCACGGCTGACCGCCGAGGAACTGGAGAG 128499 28 100.0 33 ............................ CTGCTCGATTGCGGCGTACCGCAGATGGGCGGT 128560 28 100.0 33 ............................ CAGCGAGCCGATCCTGACCAGGATGTCGCCAGT 128621 28 100.0 33 ............................ CTCTATGCGGACCGGCCAGTGGCGGAGTGGCAG 128682 28 100.0 33 ............................ CTCGCCGCGCTCGAGCAGGCCGGTCATGACGTA 128743 28 100.0 33 ............................ CACCGCCGACTGGGGCTGCATCGTGTGCGGGTC 128804 28 100.0 33 ............................ CCCGTGTCGGCTCACCCCGCACTTCGCGACCTC 128865 28 100.0 33 ............................ CGACAGCGTTTCCCGCCACGCCAGCAGCCGCTT 128926 28 100.0 33 ............................ TCGGGCGTGGCTCACCGACGCTGTGACCCCCGG 128987 28 100.0 33 ............................ CTTGGAGGCACCCGAGCGGCGGTCGACCTGCTC 129048 28 100.0 33 ............................ CCCGAGCGTGACACTGGTCGAATGCAACGCCGT 129109 28 100.0 33 ............................ CGGCAGCAAGATCGCCGACCACGCCTGCGCCGC 129170 28 100.0 33 ............................ CCGCTGAAGCAGCACTGGCCACCAGCACATCGG 129231 28 100.0 33 ............................ CACGGTGCGCGAGCAGCACGCCCAGGCAGCGAC 129292 28 100.0 33 ............................ CCGCTGAAGCAGCACTGGCCACCAGCACATCGG 129353 28 100.0 33 ............................ TGGGACTTCCAGCAAGAACTCAACTGTGACGCC 129414 28 100.0 33 ............................ GTACAGGAGGTGGTAGCGCTTATCACCAACGCG 129475 28 100.0 33 ............................ CGGGGTGTCGGTCAGCAAGATCGCCGAAGCCGC 129536 28 100.0 33 ............................ CCAGGCTTGGGAGAACAGCGCGCCGCCGAGCGG 129597 28 92.9 0 ..............C...........T. | ========== ====== ====== ====== ============================ ================================= ================== 22 28 99.7 33 GTGCTCCCCGCGCATGCGGGGATGAGCC # Left flank : CGCGGGTGACGATCGAGGTCGACGAGGCAGCGCTGGCAATGGTCGGCGCGCTGCTCGGCACCGCGGGCCGGACGGAGGAGACGGTGAACGCGGCGCTGCACGAGGTGCTCGCGCAGCGCAAGCGCATGGCCGTGCTCGAGCGGATGATGGTTCGGGCGGGGGAGCGGGTGGTGCCGGCCGATCCGTGGCGGAAAACGCCCGCTTGGCCGTAGCGGTCGACTGCAAGCGAGGTGCTGAGTGTGTCCCGGGGGGTGCATGCGGTACACGTCCAGGGTCGCGAGCGGAAACGAGGCTACGAGCTTCAACGGGCTCGTTGTGGGGCTGTTGGAGCTCGCGGGGCCTCCCTTCCGGTGTTGTAGGCGTAGGTTGTGGGAACCTGTGCGGAGGCTCACGCGAGACAACGGAGGTGTGATGTATCAGGAGGTGGATTGCGGCGCGTGAGTTGGGTGAAAGTGAATGAAAACTGGGGTAGTGGGCTGAGAACATGCAGGTCAGGAAGT # Right flank : CCGACGACAACAACCTATGGGTGCTGTGCGACAGGTGCTCCCGCACGGGGATAAGCCCGCGACTTGGTCGCGTGCGGGCTGGGCGAGGTCGTACCCCCGCGCACGCGGAGCCGCCTTCTTCGGTCGGGGCAGCAAGCAACCGCACCAACCGCCCGCTGGGCTCCGGTCGAATCCGCCGGTCCCACCAGCGTCCCGCGTCCTCGACCCTCGGGTGCGCGCGCCTGGTGTCCGAAAACGGCTGGGGTGGCCTGGATCACCTCGCCGGGGTCGTTGTGCGGTCGGTGGGGGCTCGCCGTGAAAGTTCCCGGCGAAAGAGGTATCCTGCCGGAGGACGCGTTCGCGTTCGGTCAGAATTGTGTTCGAACACGTCGTGTTCGGGCATATTGGATTCGAGCACACGCTGTGTTCGAGCAATGTGAAGGTTCCCCGGAACGAAACGCGGGGACGAACGGCGCGCGCGATCGGCAGGATCGCCGCCTAGGACGAGGAGGTGGGTCGCA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGCATGCGGGGATGAGCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCTCCCCGCGCGTGCGGGGATGAGCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [51.7-36.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 183357-184055 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADLRA010000010.1 Nocardia farcinica strain N-4 NODE_10_length_187710_cov_48.038063, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 183357 28 100.0 33 ............................ CGCCGGGATTTGATCGACAGCGAGATCCTCGAC 183418 28 100.0 33 ............................ CTTGCGGATGCTGTGCGCGAAGTCGACGGGGTC 183479 28 100.0 33 ............................ CCCCGACGACCAGGCCGTGCGCTCACAGGTCAA 183540 28 100.0 33 ............................ CATGACGCACCAACTCGGTAGCGCGTGCACGGA 183601 28 100.0 33 ............................ CCTGAGCCGCACACTGAGCAAGGCCTCGATCCC 183662 28 100.0 33 ............................ CGACGGCACCGTGCTGGAATTCGGGGAGTACAC 183723 28 100.0 33 ............................ CGCGCACGCGTCGGGTTGGGCGTGACGCGCCCA 183784 28 100.0 33 ............................ CGAGATGGCCGAGGATCGCTCCACCGAAACCGA 183845 28 100.0 33 ............................ CGGCGAGCTGGCGATCCGGGAAGCGCGCAGTTT 183906 28 100.0 33 ............................ CACCAGGTTGTAGTCCGGATCGGAATCCGGGCC 183967 28 100.0 33 ............................ CACACGCTCGACACGGCGCACGGCCGCGGCGCG 184028 28 96.4 0 ..........................G. | ========== ====== ====== ====== ============================ ================================= ================== 12 28 99.7 33 GTGCTCCCCGCGCATGCGGGGATGAGCC # Left flank : CAGTACGGTAGGTGAATTCGCTCGCGAATTCGGGGAAGAGGGTACCGGGTTTCTGGAAGAGTTCGAGCAGGTTGAGTGGGCAGGTGGAGCCCGGTCGGTCGATATCGCGGCAGCCTTCGGCCAAGAGCGCCTGGTGGACACGTTCGACGGGTATGCCGTCGAGTTCCTCGGGCCGGTATTGCAGGGCCATCCCGTACCGGGAGGGTCGGGCCTCCTGACCAGGGCAATGACGCCCAGGTGCAGCAGAGGCGTGGCGGTGGCGAAGAAGGTGTAGGCGGGCAGGATGACTTCGTCGCCAGGACTCAGGCCGTAGGCGGCGTACATCGAGTACAGTCCGGCGATGCCGGAGCTGGTGAGCACTGCGTATCGGGCGCCGAAGTAGGCGGCGGCGACGACGTCTTCGAGGTCGGCGATGATACGGCGCATGTCAGGGAGGGAGGAGGCGACTGAAAGTGAATAAAAACCATGGACTTGGGCTGAGGAACCGCAGGTCAGGAAGT # Right flank : CTCTTGGCGCTACCGACCGGCAGGGCGGTCGAGATACGCCCGGCGCCCACGGGAGTAACCACAGTTGTTCAATCGTCGTAGTCGCTGGGCCGAAAGGCCATTGCGAACCCGCGACGAGTGGCGGGCCGATCGCGAACGCGGAGCCGTCCTGGGCAACCGTCACCGCTGTAATGCGCCGTTGACGGCTCTACGTGAGACGCACTTGGCGCGGCCAACCAGACATCGTTGATGGACACAAAGCCAGTCGAGCGAGCATGAACACACAGGCGCGCCGGGCCTAGCACGATAGCCGCGCCGGTCCCGGATACTTCTACCGGTTCGACCAACCGTCGCGTGCTCCGCTTACCCCAACTGCGGTCGGAGCATTCGCGCACCCGGCGGTATCCCACCCCGGTAAGCCAATTGCACGCGTCCACCTGTCCCAGCGCGTGCATCCCTGCCGCTGTCTCAATCCGGTTGTGCACCGGCACCTGAGGAAGCCGGCCCGGCCCTGTGGCTGG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGCATGCGGGGATGAGCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCTCCCCGCGCGTGCGGGGATGAGCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [50.0-28.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 186298-187538 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADLRA010000010.1 Nocardia farcinica strain N-4 NODE_10_length_187710_cov_48.038063, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 186298 28 100.0 33 ............................ CACCGCGGTCTTGGCCGACGCCATCTACAACGA 186359 28 100.0 33 ............................ CCCGACGTACGCGGGCCTGCGGACGTATCAGGG 186420 28 100.0 33 ............................ CGACCTCGGAGTCTCGACCTCGACGATCAAGCG 186481 28 100.0 33 ............................ CGGCAGCACCAACCCGTTGACCTCCGGCGGGAT 186542 28 100.0 33 ............................ CGATCGCCGCGACGACCCACCATGACGCCCGAC 186603 28 100.0 33 ............................ CAGCGATGTCGAGGCCTACGTGCGGATCTCGTC 186664 28 100.0 33 ............................ CGCCGCGCCCTGCCCGACTTCACCGACGTCGCG 186725 28 100.0 33 ............................ CCCTTGGTTAACAAGGGGATTTGGTACGGGCCG 186786 28 100.0 33 ............................ CGCGTTGATGATCTGGAACGGGCGCACGTTCGA 186847 28 100.0 33 ............................ CTTCAAGAACATCGCCCTGTCCTACAAGGACGT 186908 28 100.0 33 ............................ CCCTGCGAGCGACGACCGAGTCCCGCAGCAGCA 186969 28 100.0 33 ............................ CTCGGCGTACCCGGAGTGCGACCGGTAGGGGGT 187030 28 100.0 33 ............................ CCAACCCCAGGTGCCCGGCACGCGGGTCGACCA 187091 28 100.0 33 ............................ CCCGAACTCGTGGACATGGACGGTCAGCTTCGA 187152 28 100.0 33 ............................ CCGACATCGAATATGGTGATTTACTGCGACCCA 187213 28 100.0 33 ............................ CGGGGAGTGGATCAGCTCCAGCGACTGCGGGAA 187274 28 100.0 33 ............................ GTGCCCAATCGGCGCAGCGCTGGCAGGCGTGGG 187335 28 100.0 33 ............................ GGTGGCCGCCCCTTACCCGGTCACCAAGCAACG 187396 28 96.4 33 ...........A................ CTGGCTGTCGTTGGACTCTGGGTCGGCATCGGT 187457 28 100.0 26 ............................ CGCACGAAGTCGGCCGTGTCGTCGGC Deletion [187511] 187511 27 85.7 0 ........A.T....A.-.......... | A [187519] ========== ====== ====== ====== ============================ ================================= ================== 21 28 99.1 33 GTGCTCCCCGCGCATGCGGGGATGAGCC # Left flank : CGAAGAGCGCGGCGAGACCTCACGACCGGCGAACTCGGAAGTCTGGCCCGGCGGGTGGGAGTGGTGCCCAACTGATACGCAGGTGGGCTGTGTTTCCACGTTCCGAGAGTGCTATTACATGCAGAAACCGGTGGACAGGGTGTATGCGCCGAACTACAGACCGCCACAGGCTCAAGCGCACTCGACAGAGTGTCTGTCCGGTCGACATCTCCTGCGATTCTGACGGTGTGGGTCTGGGCGAGTCCCTCACTGCGTTAACTGCATGCGTGTCCGAACGGGAGGCCTACGTTCATCTGGAAGGACGTGTTCGGTTGTGTCGTCTGCGTGTGCGCCGCCCACTAACGTTTGTGGCAACTTATCGGGCGGGGCCTGGTCCATCCAGTCGATGGTGCAGCTCCTCAACTGTCGGCAGGTGTAATGGTTCGTGTGCCAGGGCAAGAACCCGAGTGAAAGTGAACGAAAACCGTGGATTTCGGCTGAGGAACTGCAGGTCAGGAAGT # Right flank : GCAAAACGCACTGAACGGCCGGTCCAGCAGCGGTCTGAAGCAGTCGGGGCTGCTGCAGGGGTAGGTGACACCTGATGTGGCTTGCCTTCGGGTGGGCTGGAAGGATGTCGCTGTGCCCAAGCCTTATCCCCGCGAGTTCCGTGACGATGTCGTCCGGGTGGCTCGCAACCGT # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:-0.00, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGCATGCGGGGATGAGCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCTCCCCGCGCGTGCGGGGATGAGCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [48.3-33.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //