Array 1 628-50 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAEWU010000028.1 Erwinia amylovora strain 3446-1 Ea_3446-1_contig_28, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 627 29 100.0 32 ............................. GTTCACTTAGATTCTCAATCGTTGCAATCATG 566 29 100.0 32 ............................. GTTCTTTAATAATGTTTATGGCCTTTAGCGTA 505 29 100.0 32 ............................. CGTACCCTGCAGACGGCAAATAACTACACGAA 444 29 100.0 32 ............................. GATTTCTCCACGCATGCGGCCTGCACTCAGAA 383 29 100.0 32 ............................. GTCATATTCAAGGCGAAGTGATGTCGGCCAGT 322 29 100.0 32 ............................. CCACACGTGCATTGTGGTCCAGGATTAGCCGG 261 29 100.0 32 ............................. CACGATCACACTGTCAGCTAGATTTTATGATG 200 29 100.0 32 ............................. AATATCTAGTGTTTATGCGTGCCTTTTCTGGC 139 29 100.0 32 ............................. CAACTGAGCAACTCCGCTTTGCCCCATACCAA 78 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 10 29 100.0 32 GTGTTCCCCGCGTATGCGGGGATAAACCG # Left flank : ATTCCTCTGATCGAAACGGTGCTGGCTGCCGGAGAGATCTCCCCACCCCCACCCCCGCCGGATGCCCAGCCGGTTGCCATCCCTGAACCACAGTCTTTTGGCGATGTCGGGCACCGGAGTGCGTAATATGAGTATGCTGGTGGTGATCACTGAAAATGTTCCTCCCCGTCTGCGCGGACGTCTTGCCATATGGCTGCTGGAAGTGCGTGCGGGCGTGTACGTGGGTGATGTTTCGCGCCGCGTGCGGGAAATGATTTGGCAGCAGCTTAATCAGCTTTACGAGAATGGCAATGTGGCGATGGTATGGGCCACTAACAGCGAGTCGGGTTTTGAATTTCAGACGCTGGGTGAGAATCGCCGCCTGCCGGTGGATTTGGACGGTCTGCGGCTGGTGTCATTTTATCCCGTCTGACATGCAAACCGCGGCTTTTGACAGCAAAAAATCCGGTAGATTTTGACGGGTAAAAAAAGCCGTTATGGTTCAATGGTTTGTATCTAGA # Right flank : GCCATTCCCGAGCCATCGTCGCGACATCCAGGCGTGTTCCCCGCGTATGC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGTATGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGTATGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [28.3-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.14 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 12662-11535 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAEWU010000028.1 Erwinia amylovora strain 3446-1 Ea_3446-1_contig_28, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 12661 29 100.0 32 ............................. GATTTGCGTGAACTGCATATCCGCCGGGCAGC 12600 29 100.0 32 ............................. ATGGACAAAGGGCGAATGCTCCACATGATGGA 12539 29 100.0 32 ............................. CCGCTTTCGGATGAGACGGTACGTGAGTTAAC 12478 29 100.0 32 ............................. CAGGTATTTCGGATAGCCGGTTGTCTCGGCGG 12417 29 100.0 32 ............................. ATTCGGCATTTTTATCCCTCACAACATGCGTT 12356 29 100.0 32 ............................. ACCCTGCTGCTCTGAATGATGTGTGTCAGTGA 12295 29 100.0 32 ............................. GTCGTGGGGCGAAAGGCACAGACCGGATGCTT 12234 29 100.0 32 ............................. TGAACGAGCGCGAGGCACCTGACGGTGCAGAC 12173 29 100.0 32 ............................. GTGGTGACCTCTTTGTGGGCGGCGTTTCTGGG 12112 29 100.0 32 ............................. AAAAGCCAACCGCCCGCCCGTAATAAACCTGA 12051 29 100.0 32 ............................. ACGATTTGCCTGAAACCTCAACGAAGTTCGAC 11990 29 100.0 32 ............................. CTGATGGCGTCACGAGCCATACGGAATGTGAC 11929 29 100.0 32 ............................. CAAAAATTTGCGCATGTCATCTATCTTTTTTT 11868 29 100.0 32 ............................. CCCAAAGGAACAACGAGAGCTATCCAAACCAA 11807 29 100.0 32 ............................. GCTGTCTATCTGGGCTGCCTCTATCCAGCAAT 11746 29 100.0 32 ............................. AGATTGAGATCTTATCAACGGACTCTGACGCC 11685 29 96.6 32 .................A........... TTTCTCCACACACAACGGTGAGGGCACTGTCT 11624 29 96.6 32 ..................T.......... TGATAAAGTAACGTTCCGAATGGCGCGTGATG 11563 29 96.6 0 ...........A................. | ========== ====== ====== ====== ============================= ================================ ================== 19 29 99.5 32 GTGTTCCCCGCGTGAGCGGGGATAAACCG # Left flank : TTCCGCTAAGCATTGGCAGAGAGCGTTGCAGTGTATCACGCCGCGCGCTTCAACCCGGAAAAGCGTCCACGAAAAAGGCAGGGGCGGTTAACTCCCTGTCTTATTCGAGTGACTTCAACCCTTAAGGCGTCCGGTCGGTTGCTTAATAGCAACGATAATCAGCAAACTGACGTGCCGTATCTGCAACATCAGCAGGATTGCTCCCGGCGTTATCACTAGTATTGCCTTGATATAAGAGCGTGCGCGCAGCCTGTAAGTGCGAGCGCGTAATGGTCGACAAAAATCAATCCGGTTTACAGGCCGGTTTTTTTCCGCCGCCACGCTGCCATTTCCGCTATATTCAAGAAGTTCACTTAGTCGATTACCCTTGTATTTGGCCGAGTATCAAGCCGACTTTTCCCGTTTTGAGTAGCAAATCCGTGCGTGCTTTAAAGTGGAAAAAAGTTGGTAGAATTGTAGGGGGGTAAAAAAATCACTAAGATCAGTCAGATAGTTTTAGA # Right flank : CCATGCCGGACAGTATTGAGCAACTGGCCGACGCCGCTTTACAGGCGCTGGATACCATATGTGACAAACAGATCGCGTTTTTTGGTCACAGCATGGGGGGACTGATTGCTGTTGAACTGGCGCGCAAGATGGAAATCTGTTGGCGCAAACCCGCGCGCGCGCTGTTTGTTTCCGGTTGCCGTGCGCCTGGCGAACCGCTAACGCGCTGCCTTAGCGGATTGGATGATGAGCTGTTTATCAGACAGTTGGCCGGTTTAGGAGGCACAGAATCCGTATTGCTGGAACAGCCGGCACTATTGCGGCTGTTTCTATCCACGTTACGTCAGGATATTGCGCTGTGTGAACGTTATGCCGGGCCACCCCCTGCACCTTTGCAAACGCCAATCCATGTTATATGGGGAACGGAGGACGACTTAATTACGGATGTGATGATCGATTCCTGGCGTAAATTTTCTACTGAGGGGAACGTCTTTTTTTATCCTCTTCAAGGTGACCATTTC # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGTGAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGTGAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [43.3-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 47-2395 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAEWU010000049.1 Erwinia amylovora strain 3446-1 Ea_3446-1_contig_49, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 47 29 100.0 32 ............................. CGACTATTCGGCGAACTGAAAGAGCCAACCGT 108 29 100.0 32 ............................. ACGCCGCCATTCGGATCCGGGGAGGATTCGGA 169 29 100.0 32 ............................. AATGCCTCATACCTGGCGGCCAGCCTTCAGCG 230 29 100.0 32 ............................. TACCGCCAGTGGGCCATTGCATCCGGCATGGC 291 29 100.0 32 ............................. TACACTGCAGGCAGTACGGGAATGGTTAACCC 352 29 100.0 32 ............................. GTTTCGGCGAGCGCGTATATGGTCACGTTCAC 413 29 100.0 32 ............................. ACTTGACTGTTTATGCAGTGGTTGTATTTCTT 474 29 100.0 33 ............................. ATCGGAACGACTTAGATTAGCGTCCTTGCACAT 536 29 100.0 32 ............................. TAACCGCAACCATCGCCGCGATAAATCCACTG 597 29 100.0 32 ............................. GTTGATACGGCTGATTACAATAAAATGTCACT 658 29 100.0 32 ............................. TAAAAAATGCCGCCATCGAATCAGCAAAATCG 719 29 100.0 32 ............................. CTGCGGAGCGTCAAACGGGCGTTAACTCTCGA 780 29 100.0 32 ............................. CCCTTCTGGTGTTTTGATCCTCCTAGGTGATT 841 29 100.0 32 ............................. ATGGCCCGCTAAATGTTGACATGTCTGGTCGG 902 29 96.6 32 ............................T AATGGACGAGATTTCACAGAAAATATCTGTTC 963 29 100.0 32 ............................. TCTTTATGACGCAAAGCAAGCCTCAGCCGAAC 1024 29 100.0 32 ............................. GCTACTACGTGTACGCACAGCCGCTGGCCAGT 1085 29 100.0 32 ............................. CAGATGAGGCTGCAAATTCCAGGCACTTTTTA 1146 29 100.0 32 ............................. GATGGTCGTACCGATGTTTGCGAAAGATTCGC 1207 29 100.0 32 ............................. ACGGTCAGATGGTGGCGCTGGTTGCGCTGGCA 1268 29 100.0 32 ............................. CTGTTTATGAAAAATGCCAACAAACAGGAAGC 1329 29 100.0 32 ............................. ATATTTACTAGCATTTCCCCATGCTGTATCAC 1390 29 100.0 32 ............................. CTGGAGCATGAGACGAAATCGGGGGTAGTGCT 1451 29 100.0 32 ............................. CCGGTTCAGGTTTGATAGGTTCTGCCTAACTC 1512 29 100.0 32 ............................. TTCGCATACGACAATCTCCCGGCACTGATTAA 1573 29 100.0 32 ............................. CGCGAGTACCCATCCATCCCCGCAGAGGCATT 1634 29 100.0 32 ............................. GCAGGGCCGGTTTACGTTGCGCAATCGGAGAT 1695 29 100.0 32 ............................. AGGGTGACGCAACGATTGTTGCAATTCCTAAC 1756 29 100.0 33 ............................. CACCAGTGTGTACATTCCAGACTCAGAAACCAC 1818 29 100.0 32 ............................. CCTCGAGGTGTTCTAAGCACTCCGGGGCTTTT 1879 29 100.0 32 ............................. GACGCTCAAATCAGTGGCGGCGAAACCCGACA 1940 29 100.0 32 ............................. CCAGAGGGGATTTAGCAAACGTCATTTCTGAC 2001 29 100.0 32 ............................. TCATCTGCGGGTCGGGTAGGCTGCTTACGGGT 2062 29 100.0 32 ............................. CAGCTATTCCCCGCATCGGTCAGTACTGCGCT 2123 29 100.0 32 ............................. TGGCCCACAATGGTAAAACCGGCGGCTTTCCA 2184 29 100.0 32 ............................. GCCAATGGATTCAGGATTGGAGCCAGAATTTA 2245 29 100.0 32 ............................. AAAAAAAGCCTAAAGCTCGAAAGAATAAAAAT 2306 29 96.6 32 .........A................... ATGATGGAGCTGATAGTTTTATTAGATGTCGA 2367 29 79.3 0 ...........AC..A.....C...T..A | ========== ====== ====== ====== ============================= ================================= ================== 39 29 99.3 32 GTGTTCCCCGCGTATGCGGGGATAAACCG # Left flank : GCGGGGATAAACCGAAAGAAACTACCCCCAACCCCCTAACGGGTGTG # Right flank : AATAATATGTTTAATGCCAGCCCGGCTTCGGTATTGCCTCGCCGGACTGAGCCTGGCTACATTACCGGTAAAAGAGGGTAACGCTAAGCAATTCACGGCGTGCCGTTCAGATTGCTGCCTGGTCGAATATCGCCCTGGGTTCGATTGTTAAAACCATGCAATACGTATTATTGGCAGATGCTAAGTGGGCCTCCTTTGAAACCAGCAACGAGACAGCTATTTTTGTAACGAAAAAGGTGTATTTGTCCGGTAAACCCCTCTTTGGCTTGCGGATCGATATATTTCCCGGTGCGTGGGTCACTGGTTAATGGCCCTGCTATTCTGAATGATTTAACGGTATTGACATTAATTGAGTCGTAATTGAAGTGGCGTTCAGTTTCGATAGTCCTTTCTGAAGAAAACTCATCTATTTTTCCCTGTGGACCATCAATTGATACTTGTGCGGAATACCTGTGTTCCTGTCCACCCCGATAGGTAAACCAGGTGCTGCGGCTGATCAC # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGTATGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGTATGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [33.3-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.64 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 11861-12189 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAEWU010000049.1 Erwinia amylovora strain 3446-1 Ea_3446-1_contig_49, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 11861 28 100.0 32 ............................ TTTACGTTTGCGTTAACAGTAAGCTCTGCAAC 11921 28 100.0 32 ............................ ATCGCACCCCACTGATTGAAGAGCAGCACACT 11981 28 89.3 32 ......C..T..........T....... TAGCAATAAATTCGATAGACGCTGATTTGCGT 12041 28 96.4 32 ...................T........ TGGCTTCAATTGCGGTCGGGTGTGATGCATCA 12101 28 96.4 33 ..........................G. GCCAACGTTCACTGTCATTTAGCCACGCTTCCG 12162 28 78.6 0 .....A........G.....T...TTG. | ========== ====== ====== ====== ============================ ================================= ================== 6 28 93.5 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : ATGGCGTTTAATATGGATAAACCGTCGTATGAGGTTAAGCGGGGCGTTTATGAGAAGTGGACGATCTCAGGCGAAGGCGATGAGATGCTGCATCCGTTCCATATTCACGGTACCCAGTTCCGCATCCTGTCGGAGAACGGCAAACCTCCTGCCGCGCATCGTAGCGGCTGGAAGGATACGGTACGTGTTGAAGGCTGGCGCAGCGAGGTGCTGGTGCGCTTTAACCACCAGGCAGACAGGGCACATGCCTATATGGCGCACTGCCATCTGCTGGAACATGAAGATAGCGGTATGATGCTTGGTTTTACCGTGGCGTAATAAATACAGACTGGCGTTATAGGATGGTTTTCGCCGGGTAACAGGCCTGTCTGGCGAACCCTTTTTTCTAAGATTTAACTTGTTGATTTCTAAAGCGTGATAATTCAACAGAAAAAAGGGTACAGCACGGTTAAGCTGGTAAAAAGTTAATGCGATAAGCCAGTTAGCCCGGTAATGTAACG # Right flank : AGGACTGAATGACTTCTCCCCTTGCCTGAAAGCATACTTTGCTTCACGGGCTTCTCATGCTGTGGACATTACGCTGACAGGCAGAAAACAGGTTATCCGTGGCACATCTCCGCTGGCGCCAGCGGCTTCACCGGTGCGCCTGACCTTACCTGTGCAGTGCGGTCTTACCGCCGTTGTATGCAGATATGATTAAGACGGTTGTTTCACTGCAATTAAATCAGCTAAATGTAAAATAAGAAAAACCCCCGGTTAAAGTTCTTAATTTGAGAGTATTAAGTGGGGGTTTTTCACGGTTTTTTTACAATAAAAAAAGAAAGATCTTATATTTTTTTTATGCTCATAATTTGGCTGTTGAACCTGTTTTTAAGCTATTTGAAATTTTTTTACTCAATAATTTCCAGAACTTTCATTTTGAGTTAGCCACTTTTTTTCTCTCCTTTTTCTTCGATAATGGTTCCGCATGCAGTGCAATTGACGTTTTTTGTATTGAATGAAATGCA # Questionable array : NO Score: 5.63 # Score Detail : 1:0, 2:3, 3:0, 4:0.68, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [55.0-50.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //