Array 1 2142-38 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADQTY010000017.1 Corynebacterium diphtheriae bv. gravis strain 02-18 NODE_17_length_19906_cov_61.852824, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 2141 29 100.0 32 ............................. TCCGACTTCTTCCGCTCTTCCTCACGCCGATT 2080 29 100.0 32 ............................. CGTTTTTTCTTTAACGAAGGAAAGAAAATTGC 2019 29 100.0 32 ............................. CATGTTCTATGTCAAAGACCTTTACGAGCAAA 1958 29 100.0 32 ............................. GTCTGCATGCTCACCAACACCGATAGCTCGAA 1897 29 100.0 32 ............................. GGCGCGCCGGGTGTTTCTGGCTTCGGCTCGTC 1836 29 100.0 32 ............................. GATCCCAAATTCCTAGACTCAATCTTTTGATT 1775 29 96.6 32 ............................G CATGGGGGGGTAGGCGGGCGCAAAAGCTGGTG 1714 29 96.6 32 ............................G AGGATGACCCCGCCGGTTGGATCTGGGGGAGG 1653 29 100.0 32 ............................. TCTCTGTGGTCGCGAATATTCACACCGAATAC 1592 29 96.6 32 ............................G CATGCTGGACACCGGCGACCGACACCCCCGCA 1531 29 96.6 33 ............................A GAATCCGCGGTTACCGTACCCGGCTTACTCAGC 1469 29 100.0 32 ............................. GCGAGCAACCGGCATGCCGGCAGCGTCGACAC 1408 29 100.0 32 ............................. GAGAAGCTATCTTATGGGCGGAACGCTACGCC 1347 29 100.0 32 ............................. CGTCGTCTCTTCTTCTGCTTCCACCTTTACCG 1286 29 96.6 32 ............................G GGGGTGGAGAATCATGGCTAAACGTGAGCTTC 1225 29 96.6 32 ............................T GGGAATGTCACCGCGCTTACCCCTCCACACAG 1164 29 96.6 32 ............................G TGCAACCCTGCCGGCCGCTGAGGCTGCTAAAA 1103 29 100.0 32 ............................. ACCGCAAATAACCCATAGGGCTGGCCACTTGG 1042 29 100.0 32 ............................. ACGGCAGTGGGTGCATGTATCCCCACTGGGGG 981 29 96.6 32 ............................G CCTGCAACCGCCTGCGATATACCCGGATAGTT 920 29 100.0 32 ............................. GCCCAAAAGTCCGGCCTTGTCCTGTCGCTGGA 859 29 100.0 32 ............................. AAGACACCTATTATAACTGTTGCCCCGCGTCT 798 29 96.6 32 ............................G CGGATTGAGGTGGTCTCGAAGCTGCCATCCAG 737 29 96.6 32 ............................G CTTAGCGCCGCTCGCGCCAAGCTGAATGCCGC 676 29 100.0 32 ............................. GCTGGATCAGTCATTAATACTTTCATCTCATC 615 29 100.0 32 ............................. CCCACGTGTATTACAGCAGCAACCTGCACCAC 554 29 100.0 32 ............................. CGCGATGGCACTGCGGTAATCGTCGGTGCTGG 493 29 100.0 32 ............................. TTATCCCCCAGTGCCCAGACGATGACACGCTA 432 29 100.0 32 ............................. CTGCAAGTACTACCTCGGAATCGTCATGCTAG 371 29 100.0 32 ............................. ACCCAACTCTGCAGCCATCGCCGCAGCAGAAC 310 29 96.6 32 ............................G TTTCGAGATCAAAACATCCCGTTCTTTCAGCT 249 29 100.0 32 ............................. AATGGAAGATGGCCGCGTAATAGTGAACCTAC 188 29 100.0 32 ............................. TGGGAATGGATGGCTTTTACGATACAAAGGCA 127 29 96.6 32 ............................G GAGACTATCGCCTGGAGAGTCCAGTGTGATGG 66 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 35 29 98.8 32 GTTTTCCCCGCACCAGCGGGGATGAGCCC # Left flank : CTTACTTGGAAAGAAGCTGAGGCATTGGCTGGAAACACAGTGCGCCTGCCAGCCCGAATGACACGCAGAGATTCGGATTTTAATGCCGTTATTGATTCGCTCGAAGCACAAACACCACCAGAATGGCAACGATCCGGTTTGCTTAAAGGCCAAGTTGCGTTGCTTTTCGACGAAAGAGGAGAGGCTCGTGTAGGTCGATTCCTAGTGCGTTATACCAATGAACGTGGATTAGAGGTGGAGGTCTGCCCAAAGGAAGACGCGTAAAAGGAAACCCCGCTGGTGCGGGGAAGTATGCCTATGTAAATCTTGTAGAGATATTAAAAAGGCTCATCCCTGATCGCAGGGAACAATGCCAGCCTATGGCTAGAAGAAAGGACTAAGCAAATTTGGGTGAATGGCTGATCCTAAAACAGTAGAAATAAAGATGAAGCAGAAAAATTGCTGAAACAAAGTTATATGTAATAAGCTCTAACTGGCTCTAAACGTGCAGCTTGATAAGT # Right flank : CGCACCCCCCCACTACGTGGCCACCATCCTAGGCGTTT # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTCCCCGCACCAGCGGGGATGAGCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCTCCCCGCGCCAGCGGGGATGAGCCG with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-12.70,-12.70] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [21.7-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.77 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 104438-103556 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADQTY010000009.1 Corynebacterium diphtheriae bv. gravis strain 02-18 NODE_9_length_104437_cov_58.959601, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 104437 29 96.6 32 ............................G GAGACTATCGCCTGGAGAGTCCAGTGTGATGG 104376 29 100.0 33 ............................. GCACCCCCCCACTACGTGGCCACCATCCTAGGC 104314 29 96.6 32 ............................G GAGACTATCGCCTGGAGAGTCCAGTGTGATGG 104253 29 100.0 33 ............................. GCACCCCCCCACTACGTGGCCACCATCCTAGGC 104191 29 96.6 32 ............................G CCCAAAGGCGGCAACAAATCGACCAGTGCAAC 104130 29 96.6 29 ............................G TCTTTTGTCAGGAAACCAGCCGAGGTCGT 104072 29 100.0 32 ............................. CAGCAACCCGTCCCCAGATCGACCGCTGTCGT 104011 29 100.0 32 ............................. GATCACCGGCTAGGAATCCAATAATCACCATG 103950 29 100.0 32 ............................. CGCGTCGAGATCGTCGGGATCAACATCAGGAC 103889 29 100.0 32 ............................. AAGCGTATGGGATGGTCAGCAGTTCTGGGACT 103828 29 96.6 32 ............................G GTTAAAGAGCTAATCGGCATAGACTTCGACGA 103767 29 100.0 32 ............................. CAGCCCAGCCAAAAACGAAGTCGACGAAATCG 103706 29 100.0 32 ............................. ACATGGCGGGGCCTATATGAAAGGATCGTTAC 103645 29 100.0 32 ............................. ATTGAGGGACAGCTTAAGGCCCCATCTACCGC 103584 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 15 29 98.9 32 GTTTTCCCCGCACCAGCGGGGATGAGCCC # Left flank : | # Right flank : AGGGACTTTGAGAACTGGACCGCCGTGATTCCTTGCACTAGCAGGGTGGATGAATCTTTGTTGAAGAACGGGTTTTGGGATCTGTGTTTTCATTCAGAGAAATCAGTAAATGATGGGTCTACTAAAAAATTTTGAAAAAATTAACTTTTAATATCTATAAGGTGTATTCTGTGGAGAAAGTGCTTCCTAAGTTGGGAGTTTTAAAACAATCAGGAAGGAGTTGGTGGTGGCTTCGTTACTGGAGATCCGCTGGATTCTGGCTCTTGATACTCAAGGTAACCAGATTTCAGTTGGAATACGAGATATTTTCGCGGGGGAGGTGCAGGTTGCCTATATTCAGGGGGAGTCCCCAGCTCAAGATTATGCTGTGATGCGGCTTTTGCTGGCTATTTTCTGGCGTGCCCATTCCATGGATATCGACATGGACGTGGAACCTTTTGATTTTCTTGAATGGTTCAACAAGATGAGACGTCGTCTTGCTCGAAAAAGGAAAGATCAGG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTCCCCGCACCAGCGGGGATGAGCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCTCCCCGCGCCAGCGGGGATGAGCCG with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-12.70,-12.70] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [48.3-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,4.5 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //