Array 1 241492-237497 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGINS010000002.1 Streptomyces clavifer strain DSM 40843 Ga0451096_02, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================== ================== 241491 29 100.0 32 ............................. GCACTGGAGCGGGCCGCCGGCGGACGGGCGGC 241430 29 100.0 32 ............................. CGGGCTGAACCCAAGAGTTCAGCCCGGGGAGC 241369 29 100.0 32 ............................. AGAGTTTCCCGGCCCATCAACCACCAGGGAAA 241308 29 100.0 32 ............................. CGCCCGCGCTCCAGCAGCCTGTCCAACCCTTC 241247 29 100.0 32 ............................. AGCCGCTCTTCGGCGAGCACCTGGGCGACCCA 241186 29 100.0 32 ............................. GCGTGCTGCGTCTTCATGGCTACCTCCTGGCA 241125 29 100.0 32 ............................. GGTCCTGCTGCACCCAGGCGCCCATACCGGCC 241064 29 100.0 32 ............................. ACCGAGGGGGACCCGCCGCCGGACGCCGGGAC 241003 29 100.0 32 ............................. CTGATCCGCCCAGACCTGGGCGACAACTCGGC 240942 29 100.0 32 ............................. AGTCCGTCCTCGGCGGCATGATGCTCGACAAG 240881 29 100.0 32 ............................. CTGGCCAGCCAGGGCCCGAACCTGCGCGGCAT 240820 29 100.0 32 ............................. ATTGGCCCATGTCTGCGCCGGATCCGCAGCGT 240759 29 100.0 32 ............................. GCCCACTGAGCCCCGTACAGGGCCGCTCCGGT 240698 29 100.0 32 ............................. GACTTGGCCGCGCTGCGCGCCGAGCTGGACCG 240637 29 100.0 32 ............................. TCCAGCGGCGGGACATCCCGAAGGCTCCGGGC 240576 29 100.0 32 ............................. ATCGCTCGCGCACTCGGATTGGACGACTGACC 240515 29 100.0 32 ............................. ACGAGCCGCTGCAGCGCCCACCCGACAAACCC 240454 29 100.0 32 ............................. TTCGGGGCCTCCACATCGGACGGGACCGCGAA 240393 29 100.0 34 ............................. CCGGCGCGTGCGCGGTCAACGTCGACATCGACCG 240330 29 100.0 32 ............................. TCCCCGCTGCGCTCGCGAACTTCTGGCCCTTG 240269 29 100.0 32 ............................. GCGGGGCCGGCATGTCCGTGGTGCCTGGTGAA 240208 29 100.0 32 ............................. TCTCCGTCATCTGGGCATACGGATCCCGCGCG 240147 29 100.0 32 ............................. ACGGATGAGGGGGTGTTGAGTAGATCCGGGCG 240086 29 100.0 32 ............................. GGAACTTCCGACCGACGATTGGTCGGCCGGAT 240025 29 100.0 32 ............................. CCGGCGGAGGTCCGGATCGTGGCGCCCGTGAT 239964 29 100.0 32 ............................. TGCCCCAGTGAATCACCCAGGACGTCAATCAG 239903 29 100.0 32 ............................. CCGCTCGCGAAGAACGTCCCGTGGCCGGTGCC 239842 29 100.0 32 ............................. AAGCTCGCGCTGTACTTCGGCGTCGCCCTGGT 239781 29 100.0 32 ............................. TGCTCTCGGATCTCCTGCACGGACGGCAGCGC 239720 29 100.0 32 ............................. GATCACGGAGACCGTCCGTCAGTACATGGTCG 239659 29 100.0 32 ............................. GACGCGCTCCTCGTCCACGACGAGACCCGCAC 239598 29 100.0 32 ............................. CAGATCGATGCGGGCAAGGTCACCCCCGGGAC 239537 29 100.0 32 ............................. GAATGATCCAGCCGATGCCATCATGAGTTACG 239476 29 100.0 32 ............................. GGGGAACGCCTGGCCGCCGACCTCGACACCGC 239415 29 100.0 32 ............................. TGGACGGGGGTGCCGGTGCAGGCGGCCGGTAC 239354 29 100.0 32 ............................. GAAGTTCCGCACGGACATGGTGTTTCCTCCTG 239293 29 100.0 32 ............................. CAGTGGCTGGAGACGGAGGGGAACCGGCCGTG 239232 29 100.0 32 ............................. GTGGACTCTGGCTGCGCCGTGAGCGTCGCCCA 239171 29 100.0 32 ............................. TGGATCGCCAACGCGGTGAGCAAGGCGGACCT 239110 29 100.0 32 ............................. CACGAGCACGTCCAGCACGGCGGAGGCGGACA 239049 29 100.0 32 ............................. CGGCGCGGCCCCGGTGGTTGAGACCGGGGCCG 238988 29 100.0 32 ............................. GGCGAACTCTGCGCGCGACCAGCTGGCGCAGC 238927 29 100.0 31 ............................. TCGTCGTCCGCGCTGGGGGCGGAGTCATCAG 238867 29 100.0 32 ............................. TACGACCCCCGCGAGCACGACGTCCTGGTCGC 238806 29 100.0 32 ............................. TCCGCGCGCTCCGTGGGCTCGGCAGCTTCAAG 238745 29 100.0 32 ............................. GAGGTGACGGCGTGCCGGCCGGGCGGGGCTAC 238684 29 100.0 32 ............................. ACTCTGCGCACCCGCGGGAAGGTCCACGGGCT 238623 29 100.0 32 ............................. CACACCTGGACGTGCGGCAGCCAGGTGGTGGA 238562 29 100.0 32 ............................. TGCTCCCCGCTCACGGCCGGGGAACCGCTCGT 238501 29 100.0 32 ............................. GTCAGCATCGTGCCCACGGTGGGGCGGACCGT 238440 29 100.0 32 ............................. GACGCCGGCCCCGCGGGCGCACCCGTCGGAAT 238379 29 100.0 32 ............................. AAGCACCCGGGCGGGTACGCCCGGCAGATCGT 238318 29 100.0 32 ............................. CACGACTCCGGCGGGCTCGGCACGTACGTCTG 238257 29 100.0 32 ............................. CGGGTCCGCACCAGCATCACGGTGGAGATTCA 238196 29 100.0 32 ............................. GGCAACCCGAGCTGGGACTGCTCGGGTCTGGT 238135 29 100.0 32 ............................. TCGATGTCGACGGCGACAGTGTCCGCCCGATC 238074 29 100.0 32 ............................. GACGCTGCGGCAAGGCTCGTGGCAGCTGTCGA 238013 29 100.0 32 ............................. GGGCGTGACCTCGGGGTCTACACCCTCCCCTT 237952 29 100.0 32 ............................. GTATGGCACAGGCAAGACGTTGCGAGGTATTC 237891 29 100.0 32 ............................. GCGGGTCTTCGCGACGTCGCAGACCGATACGG 237830 29 100.0 32 ............................. GGACTGAACCTAGCCCGCCTCGAACGAGTCGG 237769 29 100.0 32 ............................. GGAATCAGGCGCTCTTCGACTGCGTCATCGAG 237708 29 100.0 32 ............................. CAGCGGGGCCTGGCCGTCAACCTCGTCCTGCA 237647 29 100.0 32 ............................. GGTTCGCCACGTCTGCGAGGACAGGTCAACGG 237586 29 100.0 32 ............................. GTCCCGGTCCAGTGGCGCGCCACCACTTAGTA 237525 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================== ================== 66 29 100.0 32 GTGCTCCCCGCGCCCGCGGGGATGGTCCC # Left flank : GCCAGGAAGTGGCAGCAGGCCGCAACTACGGCGGGGAAGGGGACTTCGACGTCCTGGAGACGACCTGGTGACCGTCATCGTCCTCACGAACTGTCCCGCCGGCCTACGCGGCTTCCTGACACGCTGGCTGCTCGAGATTTCCGCCGGAGTGTTCATCGGGAACCCGTCCGCACGCATTCGTGCCCTGCTGTGGGCAGAGGTCCTGGAGTACGCAGACCAAGGCCGCGCCCTGCTCGCCCACACCACGAACAACGAACAGGGCTTCACCTTCCTTACACACGATCATGCCTGGCACCCGGTCGACCACGAAGGTCTCACTCTGATCCGTCGGCCGAGCCCAGACAAACCTGCCGCGAGGCAAGGTCCGAAGAAGGGCTGGAGCAATGCAGCGAAGCGTCGGCGCTTCGGGCGGAGATAAGGGCTTTTTGGGTGTTATGACCGCTTCAATGAAACTACTCCAAAACAGCAGCCAGGCTTAGCAAAACTGCAGGTCACGGAGT # Right flank : CTCACTTTGGTCCTCACAGCATCTGCTTGGAGTGCCGCCCGCCTTCGCGGCCGCCGTGCCCGGCCCCGACCGTCTGAGACCGACGAACAGTCGTATTCCGCAGTTACGGCGCTGCTACCAGGCTTCTTCATGACTGGTAGCAGCTCTCGTTGAGCCGACTTAGCGACTCCGGCTACCAGCTTTCCGTCAGAAGATCGTCCCCGCAGAGCAGCAGTAGGCGCGATCATTCGCCCATGACGCAGATCAACCGCGAGTGGGCCATAGCCAGACTTGAGACCTTCATCAACGTGGCCGAACTTACGACTACGCAGCACGGCTACATAGCGCTGGCCAACCCTGTGGCCGCAGTCCAGGCCGAAGCACAGATCGCAGAGCAGATCCTCGACAAGGCTCTTCCGGGGTGGAGAACAGCCGGCTGGAAGAAGCACGCGGCTTCGTTTTGGCGGGAGCGGGAAGCCGCTCATCGGGCAATCGCCCAGTTGCGCGCCGAGCAGGAGCTC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGCCCGCGGGGATGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,1] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTGCTCCCCGCGCCCGCGGGGATGGTCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [31.7-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.14 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 251723-254800 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGINS010000002.1 Streptomyces clavifer strain DSM 40843 Ga0451096_02, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 251723 29 96.6 32 ...........A................. CCGACGGACGCGGCGGCCAGACCGGAGAGGAT 251784 29 96.6 32 ...........A................. CCCCATCGTGTCATCTCTCGCCCGCACCACCA 251845 29 96.6 32 ...........A................. AACGGCATGACCTGCGGCTGCAAACTCTTCGA 251906 29 96.6 32 ...........A................. TGGATCAGCCACGGCAGGTCGCGGGCAATGTC 251967 29 96.6 32 ...........A................. TTGTTCGGGGCCACGGGGACACTGCTCATAGC 252028 29 96.6 32 ...........A................. GGCTGGCGGGACCTGATCGTGCACTGCGAGGC 252089 29 96.6 32 ...........A................. GAGCAGTCCCAGCAGAAGCGCGCCGCCGAGAA 252150 29 96.6 32 ...........A................. GCCGTCCTCGTCTGGGACGACACCCGGGTCGA 252211 29 96.6 32 ...........A................. GCCCACACGACCATGCCGACACCGAACACGCC 252272 29 100.0 32 ............................. GGGCGGTACCTTCTTGTCGCTCGCGTCACGGA 252333 29 100.0 32 ............................. GACCAGGTCGGCGACGCGGTGGCCCTGGTCGG 252394 29 100.0 32 ............................. TGGGTCATTCCCGGGGTGCTGGCGCGATGGGA 252455 29 100.0 32 ............................. TTCTTTCCGAGCGCGGCCTTAAGGCCGGCCCC 252516 29 100.0 32 ............................. CGCGGCGGACGGCCGATACCGGTACTGAGGAC 252577 29 96.6 32 ............................A CCCGGGCGGGGGTGGGGGACGACTCCACCCCG 252638 29 100.0 32 ............................. GCCACCGCCCTCGCGGTCATCGGCTTCACCGG 252699 29 100.0 32 ............................. TCCCGGTGCTGCGCCCCCATGCGGCGGGCAGC 252760 29 100.0 32 ............................. GAGAACGGGGGCCGCTGCATGTCCGAACCGAT 252821 29 96.6 32 .......................A..... GAAGGAGCGAAGAAATGACCGACCTGACCAAG 252882 29 96.6 32 .....................G....... ATCTACAACACGTATTTGGAAGGCCATTGGGG 252943 29 100.0 32 ............................. AGGAAGCGGCTGCCGCTGCCAAAGCTGCCGAG 253004 29 100.0 32 ............................. GGCACTACCGAACCCAGCAAGGAGACCGACGT 253065 29 100.0 32 ............................. CGGCGCGAAGGTGCCGTGTTGCCTGTCAGGCT 253126 29 100.0 32 ............................. CGGGCGAACATCTCCCTGAACGCCACATCGAC 253187 29 100.0 31 ............................. AGTCGGCGACGCCCTCGGGCGCGGCCGGCAC 253247 29 100.0 32 ............................. TGGCTGCGGCCGGCGGCAGTGTGCTCGATCAG 253308 29 100.0 32 ............................. TGGCAGGGCCACGACCCGTGGATCAGGTCGAA 253369 29 100.0 32 ............................. TTCTCGGCCATCCACATGTGGAACCCGGTGCC 253430 29 100.0 32 ............................. TTCGGCTTGATGGTGTCCGACCACAGGGTGGC 253491 29 96.6 32 .....................G....... CCCGCCAAGGCCGGGACCCCGGTGACGTACAT 253552 29 100.0 32 ............................. ATCTCTTCGAAGCCGTCTGCTGAGATGTCGTT 253613 29 100.0 32 ............................. ACCCGTCGTCGGGGTCGTTTTCACCGCGCCGA 253674 29 100.0 32 ............................. GCCGTTGGGCACGCCGTACGGCCACCCACCAC 253735 29 100.0 32 ............................. TGCGCCGGCCCCGTCCGCGGCGCGTCCTCGTA 253796 29 100.0 32 ............................. GCAGGACCGTTTGGCCTGACGCGCGTACCCGA 253857 29 96.6 33 ...........A................. GACGAGTACAGCACCGTCCTGGCCGAGCGCATC 253919 29 96.6 32 ...........A................. GGTCGTCGGCCCGTCCGCCTCGGCGGCGGGGT 253980 29 96.6 32 ...........A................. GGTCGTCGGCCCGTCCGCCTCGGCGGCGGGGT 254041 29 96.6 32 ...........A................. GGCAGAACGTCGGCGCTCATGCCCGATCACCC 254102 29 96.6 32 ...........A................. GGGCTCCAGCACGTGGCTCGAGCTCCGGTTCT 254163 29 96.6 32 ...........A................. TGACCCACCGACCGGCAGACGTCTGAGCCCGT 254224 29 96.6 32 ...........A................. GTGATCTACGCCGCCGGCACGACCGTGCTCCC 254285 29 96.6 32 ...........A................. GTGACCCACCGTGAGACAACGGGACCCAACCA 254346 29 96.6 32 ...........A................. GGCTCCCCAACCCCCGCCATTCGGCAGCCGGT 254407 29 96.6 32 ...........A................. TGGCAACGGCCCGCCGAACGCGGCATCTATCG 254468 29 93.1 32 .......T...A................. ACGAGGACGACGCAGCTCTGCGCGAGCGGCAC 254529 29 93.1 33 ............A...............A CGGGGGTGAGGGCGTCAGGACGACGCGCTCACC 254591 29 96.6 32 ..........T.................. TTCGGCGACTTCGCGCTCGTGTTCCCGATCGG 254652 29 96.6 32 ..................A.......... GGATACTTCGCCTTCTCCGGCAGGTAGTCGTA 254713 29 79.3 32 ...T..T....A.........G..A..G. GGCCATAGGGTCCACGGGCTTCTGGGCCTCGT 254774 27 89.7 0 ........--.........A......... | ========== ====== ====== ====== ============================= ================================= ================== 51 29 97.5 32 CTGCTCCCCGCGCCCGCGGGGATGGTCCC # Left flank : CTTGCCGATGTCGTGCACGCCGGCCAGCCACACAGCGAGACGACGTGCGTCGTCCGCGCTGTCCGGCAACTCGGCAGCGACCAGCCTCCGGACTGAAAGCGGCAACCACTCGTCCCACAGGCGCCCTGCTACCGCAGCACTGTCCTCCATATGCCGCCACAGCGGCAGCCACCCATCGGAGTCTCGATCGTGCTTGGCCCACACTCTGAGCACAGGACCGCGCAGCCGTGCGCGCATGCCGGTGTGGGGACCCCCCTCGACTGTCATGCCAGATGGATATCTGGAGAGGCCTAGGATCCGCAGGCAAATGAAGAAATAGCGGAGAGTGTGCGCTTACTGTGGCTGTTATTGCCCCGACTGTGGCTAGCCGTCAGTAAGATTGATCGGTTGGGTACTGATAAGGCACCGACAGAAATAGGTCTAGAATGCACTGTATGTCGGCTTCCTTGAAAGTACTCAAAACTGAGTCACTGCGGCGGTAAACCCGCAGGTCGCGGAGT # Right flank : CACGGAGTGAATCGGCCGGAGTCTGACATGCCGCCGCCACATTGGCCGATGGGGAGCTGAGAACCGCAGGTCGCGAAACTTCCTGCTTGCAGACGGCGTCTGAGCCGATAACTCCGTCGATCTTGGCCACGATGTCGCGCTGATACAGATTCAGCTGGGTGGCACAGGCGGGGATGGAGGGCAGGAGTTGCAGGTTACGGGGCTCCGCGTCATAGCCGACGGCACCTTACCGACGAGATGCGGGGCGATGGTGGGCCACTGATCGAGCGCACTGCGTCGGCCGCAGCCAGCTCCCACCCCGCTCGGTCACCATCCGGCTGATCGCGTCGCCGAAGGACAGCGGATCCCGGCCCGCGCCCCGAGGACGGCGGGGTGCTGCCGGGCCGTTCGGCGCTTGGGCTGGGGTGCGGCTTTGGCTGCGGCGCGGGCGGCCCGGTAGGCGGCTCGGGCGAGGTCGACACCGAACGAAACGGTTTCTGTCATGTCAGTACTCCCGTCGA # Questionable array : NO Score: 5.74 # Score Detail : 1:0, 2:3, 3:0, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.60, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCGCCCGCGGGGATGGTCCC # Alternate repeat : CTGCTCCCCGCACCCGCGGGGATGGTCCC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTGCTCCCCGCGCCCGCGGGGATGGTCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-14] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [45.0-35.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //