Array 1 68073-69097 **** Predicted by CRISPRDetect 2.4 *** >NZ_QQLS01000001.1 Neisseria lactamica strain M37078 M37078_HUY4067A168_cleaned_ctg_8885, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 68073 36 100.0 30 .................................... TGTCTGTTGCTTTGCTGTAAACTTGAAACA 68139 36 97.2 30 .....G.............................. TTCGGGATTAAACAGCCTTTTGGTCAAAGC 68205 36 100.0 30 .................................... TTACCCCTTTGCCAAGAGATAGTGAATTGC 68271 36 100.0 30 .................................... TCTCTTCCAGCTTTTTGGCATCCATTTCTT 68337 36 100.0 30 .................................... AGGTATTTTGGATGAAATGACTGCTGAAAT 68403 36 100.0 30 .................................... AAATTTTTCAATCAGAAGCTTAACTTCCCT 68469 36 100.0 29 .................................... CCTTTCGGGGCGTTGTTTGTTTCGATGGG 68534 36 100.0 30 .................................... CAACACCGACATCAACGACATCACCACCGC 68600 36 100.0 30 .................................... TTGACTTGCCATTCACTTTTTCGTGAGTGC 68666 36 100.0 30 .................................... GCATAGGGCGAACAATACCAATGCGATGGG 68732 36 100.0 30 .................................... GGATTGATATTGCAGAAGATTTCTGCGAGG 68798 36 100.0 30 .................................... CCGTCTTGCGCGAAGGCGTATATTTTGCCG 68864 36 100.0 30 .................................... CTTAAACAAAGTGTTGCATATTATTAAACA 68930 36 100.0 30 .................................... TCATATAGGGTTTCCTAGGCTGATATAGCC 68996 36 100.0 30 .................................... GGTGTAGTTTAGTAAACACTTAACATCTAG 69062 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 16 36 99.8 30 GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT # Left flank : TTATTTTCAATTTTATGTTGAACTTTAAAGCAGTTTCGCAGTGCTGAAATTCCGCCCGAGCCCTTAAACCATACACGGCAGATGCCGTTCACAAAGGCGATGTGCAACTTTGCCCGAAACAGTCCGCCTTTACCCTTACAAGGACGAACAGCAAAAGACGGAACAGCCCGTACAGTCCGCGAAAGCGGAAAAACCCCAAGTTTTAGCAATGGCTGCGGCAAAATAGAAAACCGCCCTTAATCGGGCGGTTTTGGCGGTCTATTGACTTAAAAGCACAATCAAGGCTAGAATAACTCTAGCATCAATCGTAACAGTCAATTGCAAAATTCCTATGGTAAGAGAGATTTGCATTTTGATGTTTCCTGTGAAGTTTCAAAACTTGGCAGGAATGCAAAAAATCCCCTTGTTGTCAGCTTGGGGATTTTTGTTTGTCCCCGCCGATTTTTTAAAATCCGCGCCTCTCGCGCCTGAACCTATCTCATAAAGTTCCTTATATATTA # Right flank : TACCCCAACGGGAAATCCTTATTATGTAAGGGTTTCCCGTTTTATTTGTTCTGAAAAAATGGGCTTAAAATAACAATAATTGGTCTGAATTGACCTTTTTTTCTTGGGTTTTCAGCTCGCCCAACAGCAGTTTCATGGCGGCATATTGCTTTTCTGTTATCTCCAAACAGCGGATTGAGCCTTCTTGCGGCAGGTTTGCACACAGCCTGTTGTGGTGTTTTTGCAACGAATCTCGGCCTTTGACGATACGGCTGTATACGGAAAGCTGGAGCATTTGGTATCCGTCTTTTAATAAAAACTGGCGGAATTGATTGGCGGCTTTGCGCTTTGCCGCCGTGATAACCGGTAGGTCGAAGAAGACGATAATCCTCATAAATTTGGCCTCACTCATATCGGTATTCTTTCAATGGTAGGATTTCAGGCAGTTTCAGTTGTTTGGCGTTTTTATCGGTTACACCGGCTTGAAATGACGAAACCATTTTGTCGATGGCAGCCAAGGT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: F [matched GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.40,-0.90] Score: 0/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.41 Confidence: HIGH] # Array family : NA // Array 1 52920-54807 **** Predicted by CRISPRDetect 2.4 *** >NZ_QQLS01000002.1 Neisseria lactamica strain M37078 M37078_HUY4067A168_cleaned_ctg_8887, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 52920 32 100.0 33 ................................ CCGGCGCAGGCACTCAATGCCAGTAAGATTGCA 52985 32 100.0 35 ................................ AAAAAACCATCGGTAAAATTAACATAAATATGCAA 53052 32 100.0 34 ................................ TTTGAAAAATCTCACTGTTAATTGGTCTATATTG 53118 32 100.0 36 ................................ ATCCTTTTCTTTTAAACGCAATGCAAATTTGCTTTG 53186 32 100.0 36 ................................ GCTTTCTTTAGGTGGTTTCCAGTGAAACTGACAGGC 53254 32 100.0 35 ................................ ATTTTTCCTCCTCCGATACAGGCTCTAACACAACA 53321 32 100.0 34 ................................ TCTTTAGCCGCACGAAACCTCATCAAAGCCGCCA 53387 32 100.0 33 ................................ AAAGACAAAATTACACGCCGGCATAAGACCGCC 53452 32 100.0 35 ................................ ATATTCATATGGTTACATCCAAAAAACAGAGGCGG 53519 32 100.0 34 ................................ CGGACGGATAAAGCGACAAAAGCCCAAAACGGCT 53585 32 100.0 34 ................................ TGCCTCCCTAGGCTCAATCTGTCAATGGGTTTCG 53651 32 100.0 34 ................................ ACGGACGGATAAAGCGACAAAAGCCCAAAACGGC 53717 32 100.0 34 ................................ GATGAACAAAAAGTCTGCCGCGTGTTGTTAGACG 53783 32 100.0 34 ................................ ACGCCATCAATTCCACATAGCCCGTTTTTTCAGA 53849 32 100.0 34 ................................ AGATACGACGACAAGGACGGTAAAGGCACATTCA 53915 32 100.0 34 ................................ CACATAGCCCGTTTTTTCAGACGGCCTATCTCAA 53981 32 100.0 35 ................................ AAGAGGAAATAGCCAAGGCAAAGGTAAGGATAGAT 54048 32 100.0 34 ................................ GTTTAACAGGGAAAGTAACGGGGCGGCAAATGAA 54114 32 100.0 34 ................................ CTGGTGTTCCTATTTTAAACAATTCCTTTGTTTC 54180 32 100.0 34 ................................ TGAAACTCTACGTTTACGGTTTCAGACGGAAGAT 54246 32 100.0 34 ................................ TGTCTGAATATCTCTTTGTTCGTCTTTATAAGGA 54312 32 100.0 35 ................................ TCCAATAAGAACAAGAGAATATTAAATTTGCTGCT 54379 32 100.0 33 ................................ TGAAGATGGGCGGAGAGATTCCGAAAAATCTTA 54444 32 100.0 34 ................................ CAGATTATACTGGTTCAATGCTCGCACAAGCTGA 54510 32 100.0 35 ................................ TTCGCGAATTGAGCGAGCAGAATGGGCAGCCTATG 54577 32 100.0 35 ................................ CTATATAACATAGCTGATACCCAAGACGATTACCG 54644 32 100.0 34 ................................ ACAACCATTTTTATTGCTCCTTGCTTTTGTGTTT 54710 32 96.9 34 ...............T................ CTACAAAACGGCAATCACGCGCCGCTACATCCAA 54776 32 93.8 0 ......................A.A....... | ========== ====== ====== ====== ================================ ==================================== ================== 29 32 99.7 34 TCAGCCGCCTCTAGGCGGCTGTGTGTTGAAAC # Left flank : CATGGAGGGACAAGAAAATGCTGATGTTGATAACTTATGATATTTCGTTGGAAAATGCCGAAGGGCAGGCAAGGCTGCGGCGCGTAGCGAAACTGTGCCAAGACTACGGCGTGCGCGTGCAGTATTCCGTGTTCGAATGCGACATCGCACCCGACCAATGGGTAGTTTTAAAAGACAAACTTTTAAAAACCTACAACCCCGAAACAGACAGCCTGCGCTTTTACCACCTGGGCAGCAAATGGCGGCGCAAAGTGGAGCATCACGGCGCAAAACCGGCGGTCGATATATTTAAGGACACGCTGATTGTGTGAATCGCCAACCTGTTGTTCCCATAAAAATGCGGCAGGGTTGGCGAATCTGGGTTGTTCTTTAACAATCAGGATATTGCAAATGTGGATATGGCGGATAAGGCTGTGCTATACTCATGTTTGTGCTTTTTTCGAGAGTTTGGCGAAGTCGGGGCTGCAAAGCCTGATGTAGTAAGGCTTTCGGAAGAGGCT # Right flank : CGGCGCGGACGACATCCGTTTCCTGCGCGAGTAGGGTAAAGGACAATCTAAATTCCCCCGGCAGCTTAAAATCTTGCCGGGTCTGCACAAAAATGCCGTCTGAACAGGTTTCAGACGGCATTTTGTTTCAATAGGGAATATCTTTGTTAAAAACGGGTTGATATTATCTACACATATTAATATGATGATAATCATTATTAATCAAATAGGGGAAAAGTAGAAATGCGTAAACTGAATTATTTCAGCATTGCCTTGTTGCCGTTGATGCTGGCAGCCTGTGGCGGCAATTTCGGCGTGCAGCCTGTTGCCAAACCAACGCCGACCGCGCAAACCCCGTCAGATTCCAAACCGTCCAAACCTGAGGACGTTCCTACTCCGCCCCCTGCCAAACCTTCTATAGAAACCACGCCGGTCAATCAACCCGCCGTCGGTGCGGCAATGCGGCTGCTAAGGCGGAATATCGCAACTTCTGATAAGGATGGCAATGATTTCCCAAATAG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TCAGCCGCCTCTAGGCGGCTGTGTGTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched TCAGCCGCCTCTAGGCGGCTGTGTGTTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-5.90,-5.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [45.0-41.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //