Array 1 1064497-1068424 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP068797.1 Klebsiella pneumoniae strain RIVM_C014073 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 1064497 29 100.0 30 ............................. CTCACGCTGATACCTCGGAAAAAGACGGGC 1064556 29 96.6 32 .G........................... GCGGGCTGGGTTTTGTCGACTCTGCCGATCCG 1064617 29 100.0 32 ............................. TAATATTGATAAATTCGATGAAGTAACCGGAA 1064678 29 96.6 32 ............................A TCGAAGTACCAGCGCCGCACCGTGTTTTTTGC 1064739 29 100.0 32 ............................. GTGGCCGGTGCTGCCAGTACGGTTACCGAAGT 1064800 29 100.0 32 ............................. CATCCACGCTTCTGGCCACCAGGCAGATAATC 1064861 29 100.0 32 ............................. GTGCTCCTCTTCCAGATACTGGGCCAGGAGCT 1064922 29 100.0 32 ............................. TACAGGACGACAGCATCCTGGAACATTTCGAC 1064983 29 100.0 32 ............................. CTCTGCGTGTGCGCCTCCGCTACGAGGTGACG 1065044 29 100.0 32 ............................. TGAATATTCATTTACTAAATTAGAGACAATTC 1065105 29 100.0 32 ............................. CGGATTAAACGTAAGGCCGCGCGCTGGCGTAA 1065166 29 100.0 32 ............................. GTGGTTTGTTACCGTGTTGTGTGGCAAAAAGC 1065227 29 96.6 32 A............................ GAACGGAGGAATATAAGAACAAAAGCCCGCAG 1065288 29 100.0 32 ............................. TAAACCGCTGGCGTGGTCAGTTGCGTGGCGGT 1065349 29 100.0 32 ............................. GGCGCCGGCCTGATCACTATCGGGTAACGGTG 1065410 29 100.0 32 ............................. GGCCTGAACCAGAGCATGATCTACACCTGGAA 1065471 29 100.0 32 ............................. ATTGGGTAGAGCAGGCGAACGGATGTCTTTTT 1065532 29 100.0 32 ............................. TTTTCACGGTCGAAGTTGTGCATGCTTTCTGC 1065593 29 100.0 32 ............................. TCGACGCCCCGGTGTGGGAAGACTTTGGCACC 1065654 29 100.0 32 ............................. CAGCGCATACGGGTTAAACCGGATCACCTCTT 1065715 29 100.0 32 ............................. ACATAGCGCCCGATACGCAGCGCCAGCGGGTA 1065776 29 100.0 32 ............................. GATCGATCGTTATTGTTGAACCGCACTATGGT 1065837 29 100.0 32 ............................. CTTTTAATAATATCATCGGCAATGTCCTTATC 1065898 29 100.0 32 ............................. CGGGACCGGATCCGCGTGGGCGACCAGGATTA 1065959 29 100.0 32 ............................. CACCGATATTCAGTGCGCCAACGCCATAGCAA 1066020 29 100.0 32 ............................. CCGAGGTTTTTCATACCTTCGGCAGTCGTAGA 1066081 29 100.0 32 ............................. CGGAAATTTTGATTAGTTGAATCTGTGCCATT 1066142 29 100.0 32 ............................. CCGACTTGGGACGAGGATCCGGCGGAATGTCG 1066203 29 100.0 32 ............................. TAATGGCAAAACCATGACCTGATCCGGGCGTC 1066264 29 100.0 32 ............................. CCTGAATCTTCACTTCGTCGATCATTCTGCGC 1066325 29 100.0 32 ............................. GGTCAAAAGGTTCATTCGAGCATCGAGTTGCA 1066386 29 100.0 32 ............................. GTAACGCAGACGGCGAACGTCGGATCCATTGG 1066447 29 100.0 32 ............................. GACCAGAAAGCCTGGGCATTGTTCCGCTCATT 1066508 29 100.0 32 ............................. CCCCCGGCCGCGTGGCCGATTGCCATTACCGC 1066569 29 100.0 32 ............................. TATACAGTATTATCATAGCGAATTCCCATCGG 1066630 29 100.0 32 ............................. GTTGGTAATTACTGCTGTGTGTTACGGATAAA 1066691 29 100.0 32 ............................. GCACCAACGTTTACGGTGCGGTGGTGAAACAA 1066752 29 100.0 32 ............................. TGCCGGACGTTGTACCTGTGAGTTAATTCTTC 1066813 29 100.0 32 ............................. CGATAACCGGGCGTTTCGACTGAACTCACCTC 1066874 29 100.0 32 ............................. TTAATACCAGGGGGCAGGTTCAGCAGGTCCCC 1066935 29 100.0 32 ............................. CCGCTTTAACCCGCTCCGGCAGATCCGGGTGA 1066996 29 100.0 32 ............................. CGCGCTGCGAATTTGTTGGTCGATTTCGATCT 1067057 29 100.0 32 ............................. TGGGTAGAGGTTAACTGGTTATTGGTCATTGA 1067118 29 96.6 32 ........T.................... ATCGCGGAGGCCTTCGGTGTGTCTCTTTCCTG 1067179 29 100.0 32 ............................. CCGTTGTCAATATCTCCCGGCGTCCGCGCCAG 1067240 29 100.0 32 ............................. CTGCAGGTAAATGACTGGATGGGGGAAGAGGT 1067301 29 100.0 32 ............................. CACGTCCGGAAACCACGGGTTATCCGTGTAAT 1067362 29 100.0 32 ............................. CAGAGGTCCTTATCTTTTCAACGTCAAAGTCG 1067423 29 100.0 32 ............................. GCAATCCCAGAGCGCGAATATCTTGGGCTCTC 1067484 29 100.0 32 ............................. GACATGGCGCGCGAGTTTATCGACGCCTGCGC 1067545 29 100.0 32 ............................. GGGATGAGCGTTTTCCGGTGGATTCTGATGTG 1067606 29 100.0 32 ............................. TCCCCTACCACCCACTGAGCAAACTGGTAGCA 1067667 29 100.0 32 ............................. CAGATACCAACGGTTACTACGGCAATCAGCAC 1067728 29 100.0 32 ............................. AAGGTTGACCTGTTGTCGGCAACCATCGAGCC 1067789 29 96.6 32 .........A................... GAGGCGCGCGTTGTCGTCGGTGAGATGCGCGA 1067850 29 96.6 32 .....A....................... GCCATTCGTGCTTCTTCGCTTTGCTGCATCCA 1067911 29 100.0 32 ............................. GAATATAAAACCAGATTCCATATAGCCCTGTG 1067972 29 100.0 32 ............................. CCGGTTACGGGGATGACTGCAATTCGCTCCTG 1068033 29 100.0 32 ............................. GGTCAAAAGGTTCATTCGAGCATCGAGTTGCA 1068094 29 100.0 32 ............................. GCGGCGTCAGGTGTGTGGCAGAAAATTATTGC 1068155 29 100.0 32 ............................. TCGTCTGAGTTCCGGCTTACGCCGTGCCGACA 1068216 29 100.0 32 ............................. GTGATCGTCATGGATATCACTGCCGTTCCGTC 1068277 29 100.0 32 ............................. CAGACAGACAGCAGGCAGCAAACAGGGAAGAC 1068338 29 96.6 29 ............T................ GGGTTCACTTGGGTGAAACTGAACTAACT 1068396 29 75.9 0 ...........ATTC...A......G..C | ========== ====== ====== ====== ============================= ================================ ================== 65 29 99.3 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : AGGTGCTGTCTGCTGGCGAAATTGAACCGCCTCAACCACCGCCGGATATGCTGCCGCCGGCGATACCCGAGCCCGAGTCGATGGGAGATAAAGGGCATCGAGGGCATGGCTGATGAGTATGCTTATGGTGGTGACGGAAAATGTTCCACCTCGCCTGCGAGGACGGCTCGCAATCTGGCTGCTTGAGATCCGCGCTGGGGTATATGTTGGTGATACCTCAAAACGGATCCGGGAAATGATCTGGCAGCAGGTGATACAGCTAAGTGACGGTGGAAATGTCGTGATGGCCTGGGCGACAAACAGCGAATCAGGTTTTGAGTTTCAAACCTGGGGAGAAAACCGCCGTATACCGGTAGATTTAGATGGCCTACGACTGGTTTCATTCCTTCCCGTTGAAAATCAATGAGTTGGATGTTCTTTAATAATGTGAGATTGTTGTGATAAAGTTGGTAAATTGTTGTGTGCTTAAAAAGCTATTATAAAACAGTAATATATCTTTA # Right flank : CGTCCACTAACGTTATCGATCCTGAGAGTGGGCACGAAAGATTGCGGAGAATAAATATCGCTACCTGCCGCTCTAGCGATATCACTGTTTTTTTACCGTCTCCTGGATCGCGCTAAAATCCGGCTCCGGGCAATCCCGACCAAAATTTTCGGCCCATGGGAACGGGGCGCCGTACTTAACATAGCGCTGATACAGGCGTTTGGTTAATTGAGCATCCCGCCCCCATACCCATCCTGTTGCATTACACAGCACGGCAGCATAGGCCTGTGATTTATATGGCAACAGGTCGGCCGCTTTTTCCGCCAGCGTCACCGCCTGCCAGCGATAGTGTAAGAAATGACTGTCCTGTTTTAGCAGGGATCGCTGAACGCGTTGCCGTTCGCCATCACTTATCCACGATGTCACGGCCGAATTATCTTCCGGTCCCTGGTTGTAATAGGGCCATGAATACCCGCCTCCATACAGCGCAAAATCGGGCGCCATCTCATAGCCTGTCAATT # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [3-11] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [78.3-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //