Array 1 318922-319430 **** Predicted by CRISPRDetect 2.4 *** >NZ_BLVZ01000004.1 Pseudomonas cichorii strain MAFF 302096 sequence04, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 318922 28 100.0 32 ............................ AACCTGGAGGACGCCAACCTGAGCGGCGCCTA 318982 28 100.0 32 ............................ GGCGAGGATGAGTGGCAGTTCGCAGGCTGGTG 319042 28 100.0 32 ............................ ATCCACGGCGCTGATACGCCCGCCGTTGGCGC 319102 28 100.0 32 ............................ ATATGTTGATGTGGCACGACCAGCCCGCGTGT 319162 28 100.0 32 ............................ TTGGTGTCAGGGTCGCGATCTGAAGCGCCCCA 319222 28 100.0 32 ............................ CATATGGCTAGGCGGGCGTCGCCGAACGACAT 319282 28 96.4 33 ............G............... CAGCTCCGAATCACCGCCAGGCGCTCGTGCGAT 319343 28 96.4 32 ............G............... AGGCCGAGGCCGCAGAACGGCACAGGAAGCGC 319403 28 89.3 0 ............G........CC..... | ========== ====== ====== ====== ============================ ================================= ================== 9 28 98.0 32 CTTCACTGCCGTATAGGCAGCTTAGAAA # Left flank : TGGATTTTGTTGGTTGCTGAGCCTGGAGCCCGCTTACAGGCGACAACTATCGTCCTGCCAATGAAAGAAAGTAGCTACCTGAGTAGGAGCGAATTCATTCGCGAGACGGCATTCCAGACAATACATATTCCTTGAATGTACCGACCTCTCCCTCCGACATTGCAGATCCCGATGCCGATCATTTAAGGCACACGCAAGCTTGCAGGAGGCAGCTTGCTGGCGAAAAAGGCCTTGAAACCGACAGATATTCTGCGTCTGTACGTGAAGTCGCTAGCAAGCTGCCTCCCACAAAGCGATCTATGACCTCAACTGATCGGCATTACTCCTAGATTGCCGATGCCAAGCCACGATTTAACTACCCCTTTTCTGACCCTCTTTTTTCTAGCCCTCTCAGGCTTCTTTAAAATCAATAACTTACGGAAGCCTAAGAAAAAAGGGTCAAACAGTGTTGGGCACGTGATTTCTCTTTAAAAACGGAGGGTTATAAGGCAAGGTGTCTA # Right flank : ACCTCCTACATGTATGACCAGCAGCATCCAGATGGTTATTCGGTGACGCCCTTCCCGGATAAATCCGGTCCCACAGAAAGCGCAGTATCAGGGTCCGGTGAACATTGCTTTCATCGGACCCATTGCCTATATTCCCGCTCGGCGCTATCCACGCCTCCATCCGCGGAAAGGGCTGCGCCCAGGATCTTGCCTCTCGCATTCGTCACTACGACTCCCGACCTTCAAGCGGACAAGGTTTGTGCAAGGAGATCGTATGTCTACTCGTTCTGCGTCATTGTCCAATGACGGTCGTATCAACCTTGAGCAGCAGCGCAAGCGGGCCAAGGAGCTTTTGCAGCGTATGAAAAATGGCGCTGCGCCTGATGAGCTTTCGCTGATTTCACGTAATCATTCCTCCGCGCCTGTGACGCTGTCCGATGCTCAGTGGCTGATCGCCCGGGAGTTGGGTTTCAGCAGTTGGCCCAAGCTCAAGGCGCATGTGGATGCGGTGGATTTTGCGG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTCACTGCCGTATAGGCAGCTTAGAAA # Alternate repeat : CTTCACTGCCGTGTAGGCAGCTTAGAAA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched CTTCACTGCCGTATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [58.3-35.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 322323-321874 **** Predicted by CRISPRDetect 2.4 *** >NZ_BLVZ01000004.1 Pseudomonas cichorii strain MAFF 302096 sequence04, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 322322 28 100.0 33 ............................ CGACCAAAGCTGCGACCGGTATGAGTTGTCTGT 322261 28 100.0 32 ............................ AGTCAGCCTCAAGTGAAGATGAAGCCCGCCGC 322201 28 100.0 32 ............................ TGTTCAGGATCACCCCCGAAGAACAGCAGCAG 322141 28 100.0 32 ............................ CCGCACCCTGCATGCTGTCGCCTTCCACTTGC 322081 28 96.4 32 ............G............... AGATTCAAATCGCACAGTCCTGAGAGCCGTAA 322021 28 96.4 32 ............G............... GGCCTCGGCCAGCAGTAGGGTGGTGCCCATGA 321961 28 96.4 32 ............G............... AACGAATGACACGCTGCTGCTTACCAGGGCGG 321901 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 8 28 98.6 32 CTTCACTGCCGTATAGGCAGCTCAGAAA # Left flank : GGTTTTTTAACACTTTGCCATTCGCAAACGATTGCAGGAACGAATTCATTCACGAAGAAGCATATATGGTGCTCTGAAAATACGCAGGAGCGCGCTTGCCCGCGACGGGGCAATGAAAAATGCATGGTTCAAAACGCAGGCAGTGCGAATATCAGCAGCGGTGCATTTCTGAGCTGCCTATGCGGCAGTGAAGAGTGTGCCCTGTCGCGGGCAAGCCCCCTCCCACTGGGATCGGATCTACCCGTGAGATGCATCGCGGGCAATGAATTTTCGTGGGAGGGGCCTTGGCTGCGACATATCAACAGGTACGGCTATGTCGCATAGTGTTTGAACACCTGTCTACAACGGCCAGGAATGAACCCTTTCTTGACCCTCTTTTTTTCGTCTCAGGTTCGTGCTTTAAAAATCAATGACTTACAAAGGTTGATGAAAAAAGGGGTAAAACGGCTTCAGGTGCATATTTTTCTTTGAAAACGGAGGGTTATCGAGCAAAGTGTCTA # Right flank : ATCACCGGATGAATGTCGCCGTCCGGCAATCGACTTCACTGCCTATAAGGCAGTGAAGGCAAAAGCCGTTGATCGTGAAGGCCTGTATCACCTCAGCTACCAAACGCGCCCCAAACCTTGCGCCACATTCCTTGCCTGGGCTGCGGCGGGACCTCCATCACCACATGTGGCATATCCCGAAACCGAATCCATGATTCGTTACGCCATTGCAATACGCTCAGGGCATTGCCGAACCATTGCATCTGATTCAGGCACGGTTGATCGCCCGTGACCGCATGTTGCTGATGCAAAACCGGCAACACGTCATGAGTCAGCCAGTGACGCAAGGCGCGGTTTTCGGGGATGTAATGGTGAACCAGCATCGCAAACACACCGGATTCACTGAGCAGCACGCACTTTTCCCAACGGCCATGGGCTTGCAGCCAGGCTGTGCGACGTTGATCCGGGTCGAGCTTGAGGGTGGCGCGTTCGTCCAGCTTCTTGCCCATCAGGCGCGCAAG # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTCACTGCCGTATAGGCAGCTCAGAAA # Alternate repeat : CTTCACTGCCGTGTAGGCAGCTCAGAAA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTTCACTGCCGTATAGGCAGCTCAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [45.0-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 3 332046-331658 **** Predicted by CRISPRDetect 2.4 *** >NZ_BLVZ01000004.1 Pseudomonas cichorii strain MAFF 302096 sequence04, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 332045 28 100.0 32 ............................ TGGCAGTTCCGGGGCGACCGCCTTACCAACCT 331985 28 100.0 32 ............................ TTTCAGGTCAGGCGGCGCTTACGCGGCGCGGG 331925 28 100.0 32 ............................ AATGGCACGGGCAGCGGCAGACGTACCCAACG 331865 28 100.0 32 ............................ CAAGTCAAATATTCTCGGAACTGTTTCACAGT 331805 28 100.0 32 ............................ ATGCGATTCTCCAGGCAATAAAAAACCCGCGA 331745 28 100.0 32 ............................ GACCCAACGAAGCTGCGCTCTCAGCGCCGCGA 331685 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 7 28 100.0 32 CTTCACTGCCGTATAGGCAGCTCAGAAA # Left flank : TCGATAACCTTACGTTTTCAAAGAAAAATATGAGCTTGCGATCGTTTTACCCCTTTTTTTCGTCGGTTCTGTAAGTGATTGATTTTAAAAGGGTGCATGGTGGGCGAAAAAAAGAGGGTCAGGATCAGCAATTGATCCAGACTCGCGGCCTCATCGTCCCTCGATTACCGAACAACCGCAGCGCAAGGCCTCCCGACAATGGTGCCAGCACTGCGAGAGTCACCGTGTGTTGCCTTGTCGCGGGCAAGCCCCTCCCACGGGGATTTGATTTATCTGCGACAAGGTATCGAGGGCAATACATTTTCGTGGAAGGGGCCTTGGCCGCGACAGTGCTCAGACAGAAATGCACCAGCAATGAACCCTTTTTTGACCCTCTTTTTTTCGCCTCAGATTCGTTCTTTAAAAATCAATGACTTACAAAACTCGGTAAAAAAAAGGGTAAAACAGCTTTTGGTGCATATTTTTCTTTGAAAACTGTAGGTTATCTAGCAGAGTGTCTA # Right flank : TTTGGCTACACGGCAGTGAACTCGACTCGGTCGAGCAGGTATTCACCCAGGCGTTTCTAAGCTGCCTGCATGACACTGAAGTCGCCAGCAAGCTGCCTCCCACAAAGTAATTCATGACCTTAACTGATCCGCCTTACTCGGTAGGCGGATTCATTCGCGAAAGGGTACGTCCGACATAGATATGTCGTTTGAAATACCCCTTTCCCGGATGAATCCGGTCCTACAGGTTTTGAGGGCCGTGATCAGCCAACCCTGCACAAACCTTCTAGACTTCCCGCCTCCCATACGCGATAACACTCAACCCGACCCCAAACCCTGTAAGCCCACCATGACTCAGAGCAACTGGATCAATCTTGCTCAGGACCGCGACACCGGTATCGAGACGTTGCATGCCCATTTCCAGGGGAATGCTCATGTCTACGATCCGCATTGGCATGACAGTTATCTGGTGGGTGTCACGGAGCAGGGTGTGCAGCAGTTTCATTGTCGGCGGCAGCGTT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTCACTGCCGTATAGGCAGCTCAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTTCACTGCCGTATAGGCAGCTCAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [46.7-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 4 332558-332824 **** Predicted by CRISPRDetect 2.4 *** >NZ_BLVZ01000004.1 Pseudomonas cichorii strain MAFF 302096 sequence04, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 332558 28 100.0 32 ............................ TTTCCAAAGTTCGATAGACACAACGGAAAGTC 332618 28 100.0 32 ............................ GCTTGGATGGGCCAACCGTTTCAATGCAGATG 332678 28 100.0 32 ............................ CGAGCGCGGCAAGCCGCTTGCCGGTGGGGTCT 332738 28 100.0 32 ............................ TACGACCCGGTCACTAACGGTCATCTGCTCTG 332798 27 78.6 0 A..A.......A.C..........-.C. | ========== ====== ====== ====== ============================ ================================ ================== 5 28 95.7 32 CTTCACTGCCGTATAGGCAGCTCAGAAA # Left flank : TAGATAACCTACAGTTTTCAAAGAAAAATATGCACCAAAAGCTGTTTTACCCTTTTTTTTACCGAGTTTTGTAAGTCATTGATTTTTAAAGAACGAATCTGAGGCGAAAAAAAGAGGGTCAAAAAAGGGTTCATTGCTGGTGCATTTCTGTCTGAGCACTGTCGCGGCCAAGGCCCCTTCCACGAAAATGTATTGCCCTCGATACCTTGTCGCAGATAAATCAAATCCCCGTGGGAGGGGCTTGCCCGCGACAAGGCAACACACGGTGACTCTCGCAGTGCTGGCACCATTGTCGGGAGGCCTTGCGCTGCGGTTGTTCGGTAATCGAGGGACGATGAGGCCGCGAGTCTGGATCAATTGCTGATCCTGACCCTCTTTTTTTCGCCCACCATGCACCCTTTTAAAATCAATCACTTACAGAACCGACGAAAAAAAGGGGTAAAACGATCGCAAGCTCATATTTTTCTTTGAAAACGTAAGGTTATCGAGCAGAGTGTCTA # Right flank : ACCAATCAAATCATCTTTCTAAAAACCATAAACAACTGATTTACATAAATTTAAAGCACTCACTGTAGGAGCGCGCTTGCCCGCGACGGCAATATTCCTGACGACAGATGTGTATCGACTCTGTCTATGCCGTCGCGGGCAAGCACTCTCCTACGGCCCTTTCCGTAACTCCCTTCGTACACAAATCGCGGACTGGTCTTTCTGACACTCTGCCGCTCCCCGGCTCAAAAAACATAAAGCGCCGCCCTACGCTATCGGCTATATATGTTTCCTCTCACCGGCCTAGTGCCATTAGTGGTAGTGCTTCTTTCATGGATGACATCAGCTCTTCGGATCTCAAGACGATCCTGCATTCCAAACGCGCGAATATTTATTACTTGCAGCATTGCCGGCTATTGGTAAATGGCGGTCGGGTCGAGTATGTGACCGATGCGGGCAAGCAGTCGCTGTACTGGAATATCCCCATCGCCAATACCACGACTGTGTTGTTGGGCACCGGC # Questionable array : NO Score: 5.85 # Score Detail : 1:0, 2:3, 3:0, 4:0.79, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTCACTGCCGTATAGGCAGCTCAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTTCACTGCCGTATAGGCAGCTCAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [63.3-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0.27 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 5 341896-341568 **** Predicted by CRISPRDetect 2.4 *** >NZ_BLVZ01000004.1 Pseudomonas cichorii strain MAFF 302096 sequence04, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 341895 28 100.0 32 ............................ TCCTGCTCAACCAAGGCATTGACGTTACCCCC 341835 28 100.0 32 ............................ ATCACATCATCCAAGCACTTGCGCAACTCTGA 341775 28 100.0 32 ............................ ATCTGCTGTACCACCTCGCTTGGGCTTGGTCA 341715 28 100.0 32 ............................ ATTGCGGCGCCGCGGGCTGACGAGCCTCTATC 341655 28 100.0 33 ............................ AGATGCATCTCGGGAAGCTCCGAGCGCCTGCAT 341594 27 89.3 0 .....................C..-..C | ========== ====== ====== ====== ============================ ================================= ================== 6 28 98.2 32 CTTCACTGCCGAATAGGCAGCTCAGAAA # Left flank : ATCTGCTGTCCGAATCGGATGAGTACCGGAAGCCGCGCTGTAATAAGTCGCCGCAACCACCACCATCAGCGCAAAACAGGCACTGTAGAACCCGAAGGCATAAGGGTCTTTCATTATTATTCTTGTCCCCATCAGTCAAGGTGGCCAGAGCATCAACCGCTTAAATGATGGGTTTGAGGGTAGTCGAGAGTGGGGGTGTTTGCTGCTGAGAGATCTATCCCAAGAACACATAACCCCGTGGGAGGGGCCTTGGCCGCGACTTCAAGTTTCAGGCGCTGAAAATATGTTGTCTGGAAGCAGGTCGTCGCGGCCAAGGCCCCTCCCACTGGTGACATGTATGCCTTAAATGATCGGCATTACCCTTTCCTGACCCTCTTTTTTTCACCATAGGTTCATCCTTTAAAAATCAACGACTTACAAAGCTCGATAAAAAAAGGGGTAAAACGGCTGAAAACGCATATTTTTCTTTGAAAACGGAGGGTTATCGGGGAGAGTGTCTA # Right flank : CAAACCCCTCGCAGTTACATCACCTGCAAGGGGGGGGCGGTCCATTAGCCAAAAAATCATCAAAACCAGGGAACAGTCGCCGTAGCACTCAACCCATAGCTATTGAAGGTCCCCGGCTGGGCGTTGGCTTGTAGTGATCCATGCTGGATGAACAGCAGAAACGTCTGGCCACTGGTGCGGCTGCGAAGTTGGGTGAAGGGCAGATTGCAGCGTTTCGCGGCGCTGTCGGAGATGCGTTTTCGGGCTTGTTCTTCAGTGATGCCGTGGCGTTTTATCAGGCGCCGTCTTGTGCGTTCCGGGTTGCTGTCCACTTGCACGCGGCTGACGCGGCGATGCTGCGCATCAGCAGGCACCACGCTCAGTTCGCCTACCCGCACATGGTCGCGCATGCCCGTCAGCCAGCTCTGGGCCATCAGGGCATCCAGCGCTTGCACACTGCCATGTAAGCGCAGGCAGTCGCCCAGGCCGCTGGCCTTGCCTCCAAGAGCCGGGAAGCTGAT # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTCACTGCCGAATAGGCAGCTCAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,9] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTTCACTGCCGAATAGGCAGCTCAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [46.7-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //