Array 1 202533-202026 **** Predicted by CRISPRDetect 2.4 *** >NZ_PYLU01000003.1 Photobacterium iliopiscarium strain NCIMB 13355 CFSAN065522_3, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 202532 28 100.0 32 ............................ AGGGGATAAATGTATTAGCCATAAGTCCCCGC 202472 28 100.0 32 ............................ TGCTACTGGCTCTATATATGCACCATTAGAAA 202412 28 100.0 32 ............................ TGAACGTTAACGAAGTCGCTATTTTTTGGGTT 202352 28 100.0 32 ............................ GCTGGATAGGCGCAGCTATTTTAATACTTGAA 202292 28 100.0 32 ............................ AATGTTGAGAACTTAGCCGCAATACTTCCATT 202232 28 100.0 32 ............................ GTATTTCAGCTGACATGCTTGAATACTCAGAA 202172 28 100.0 32 ............................ GTTCTGTATGATTGGCATAGTTTAGCGGCTGC 202112 28 100.0 32 ............................ CATAAGAAACAGTTGAGCAAGCAAGAAGATGA 202052 27 85.7 0 ....................T..T-..T | ========== ====== ====== ====== ============================ ================================ ================== 9 28 98.4 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : CTACTTCATTAGCTGAGAATAACGGCGTTCCGCCACCACCGCAAAAACCGACTAGCACGCCAGCTTTAGCTAATTCGCGCATTGCGGCCTGAGTAATGGACGTGCCAGTTCCGAGCATTATGGCTGTCGTGTTTGCTATGGGGATATTCCAATATAATGATTGCTTACCTTCGTCAGTGACATATTCAACCCGCCCACCATTCACTAATACGCGGCAATGCTGTAAATAATAAAGATTGGCACGTTTAGAATGAATAATCGTTTTTAGCTCACTCGGTGTGAAAGACTTAGCGCACATAGCAATCACCAACAATAAAAAAACGAATTATATACATAATGCGTATAATTCGTTTAGAGTGTAATCACAAATACCCTTTTTTATTTGGCACTTATTCAAACCATATAAAACAACAACTTAAAATATCAGTTTAAAAAAGGGTTTTTAGCGAGGATTTGTGGTTTAGCTTTTATAAGCAATCACTTATACTAATTACGCTTCA # Right flank : TACTTGCTGCTGCCATCGCTTCTTTGATTTCATCTGAGCCATAACCTTTTGATGACAGGTAGGCATAGGCTTTACTTTTATCTTTAAAATTCGACAAATCAAACCGCTTTTTCGCTAACACTAATTGGCAGTTTTCATAAAAATCGACCTCACCCGCTTCCTCTAAATCATAGAAGACTTGCTCAAGGTTAGTAATATCAACATGCTTCATTTTAAGCTCTTGCTTGATGACTGTTTTGCCTTTGAGCTTTCTCACCAATTTCAATACTTCGGTTTCAAGATCAGCATTCATGCCTTTAATTTTAGCTTTGCTCAATAGCGTATCGGCGGCATCATGCTCAGAAATTGCTCTTGAAATATCTTGAAAGCTGTACCCTCGCTTAGTGAGATCGTTGGTTATTTTCTCTTTGGTGGTTTGACTAAAATCATCATAACTATCTAAACGACTTTTGATCATATCAAGTTCAGACACTTGTTTTTTCTCCATAATATCAATTAAT # Questionable array : NO Score: 6.18 # Score Detail : 1:0, 2:3, 3:0, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [56.7-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 211353-213779 **** Predicted by CRISPRDetect 2.4 *** >NZ_PYLU01000003.1 Photobacterium iliopiscarium strain NCIMB 13355 CFSAN065522_3, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 211353 28 100.0 32 ............................ AGCATCTAGATAAGCCGTCTTAGCTTCTCGTA 211413 28 100.0 32 ............................ ACGCCCGTTGTATATTGAGTCAAAGTCAATAC 211473 28 100.0 32 ............................ TCTTAGCTTTAATTCTTCTAATATTTCGTCTA 211533 28 100.0 32 ............................ GTTGATATGAATTCGAAAGAGTTTCGATACAC 211593 28 100.0 32 ............................ TTCACAAGACAAGCTGAATCAAAAAAAGCTTT 211653 28 100.0 32 ............................ ACCGATAATTCCGTTAACCCACGGATTGTAAC 211713 28 100.0 33 ............................ AATGAATCATCATCAGTCTTTTTAATTTCTGGT 211774 28 100.0 32 ............................ AGCTAGTACTTGACGGATTTAAACAGGCGTAC 211834 28 100.0 32 ............................ CACTAACATACCACCTCTTAACCGGTCTCAGC 211894 28 100.0 33 ............................ CTTTGCCATTACTTTATTGAATTGGCTTAAACC 211955 28 100.0 32 ............................ TAGAAATAAGGGGCTTTTTTGTGTCTATATAT 212015 28 100.0 32 ............................ ATTAAGAAACCAAGCTGATTTATTTAGTGGTT 212075 28 100.0 32 ............................ GTACATGGTGGTAATAAATCTCACACTTATTT 212135 28 100.0 32 ............................ ACTGAAGAATGCACCCAATGATTCAGCATCGG 212195 28 100.0 32 ............................ TGACGGTGCTGAAAAAAGCGCTGGACTACGAA 212255 28 100.0 32 ............................ AGAGTATCAGAACGACAACTAAAGAGTTTTAT 212315 28 100.0 32 ............................ TTTCTGGTAATCACTCAGTAACCATTAAAGTT 212375 28 100.0 32 ............................ GAAAGCATACCGGACACAGCAGCAACAGCGCA 212435 28 100.0 32 ............................ AACAAAGTGAGAACTAACTTTAAAAAGTTCAC 212495 28 100.0 32 ............................ TTTTGTGGCGAACTTTTTACGAATGCGCTTAC 212555 28 100.0 32 ............................ GCTAGCACCCCATGACACGGCATCATGCGCGA 212615 28 100.0 28 ............................ TGTGACTTCTATAGCTACTCCCCAATCA 212671 28 100.0 32 ............................ TTAGTAAAGGTTGGCTTAATTGCCACATCAAA 212731 28 100.0 32 ............................ ACAAAACAAAACTTCGCCAAACAGATAAATGA 212791 28 100.0 32 ............................ TTATCACTTATTGCTAGTGAACCATCGATTTT 212851 28 100.0 32 ............................ AAGACGTAAACGGAATTCAGAAGAAACACTAT 212911 28 100.0 32 ............................ ACATCAGGTAATGACATAAGATTATCTTTTTC 212971 28 96.4 32 ...................A........ GCTATATTAAACATAAACTAGCCTTATCACTT 213031 28 100.0 32 ............................ ATTCATGTCTGCAATTTCACCCGTCATACGTT 213091 28 100.0 32 ............................ GTCATCTATCGGTGATTACATCCTCAACCTTA 213151 28 100.0 32 ............................ AGATAGTAATTTAGCAAACGCAAAATTTAAAC 213211 28 100.0 32 ............................ CAATTACTATCAGGGGCGGCTGGCACTGTAGT 213271 28 100.0 32 ............................ ATATTAAAGGGTTTAACGCTGACGTGTTGAAT 213331 28 100.0 32 ............................ GTATCCGCATGCAAGGTAATGCGCCTGAAGAT 213391 28 100.0 32 ............................ TGTCGGGGATGGCTCTGCTAGCTTAAGGTCAT 213451 28 100.0 32 ............................ AGACAGCTCCATCATGATGCCCTGATGCACCC 213511 28 100.0 32 ............................ GAATGCAGCGCCAATGATACCGTTGTAATTTG 213571 28 100.0 32 ............................ AGCTCAAACGGAAATTGCCACTGTTGACATGA 213631 28 100.0 32 ............................ TGAAGATGGGAATGTGTTTAAAAACCTATACA 213691 28 96.4 32 .........................C.. CATTCAATGCGATTGGCTTTGAGCTTGTAAAT 213751 28 71.4 0 ...A...A.G.T..T..T..A...T... | T [213775] ========== ====== ====== ====== ============================ ================================= ================== 41 28 99.1 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : ACACGCATGTAACGACTATTACAGAAATTCCGAGTGACATCAAAGGTTATCAAACCGTTAAGCGTGTACAGACTAAAAGTGCCAATAATAAGCGTAAGCGTTCAATTGCTAAAGGTTGGATCAGTGCTGATGAAGCGATCCATGCTATTCCTGATACAGCAGAGCGTAAGTTAACTTTGCCTTATGTTCAAATACAGAGTTTATCTAATCAGAATGTGATGCGAGTATTTATTGAGCACAGCCAAGTTGTGAGTGCTGCAACTGACGGTGTATTTAGTAGCTATGGATTAAGTGCCACCGCAACGATCCCTGTATTTTAAGTGCTGTTTTGATTGTAATAGCAATAATGGGTTAGATGAGTAGTCATTTAACCCTTTTTTTTAGCCGTTATTAGTTGTATTTAAAATCAATGACTTATAATCAGCAGATAAAAAAGGGGTAAAAGAGGGTTTTTAGGGTTTTATTTAAATTAAACAATCGCTTATTATAGTTAAGCTTCA # Right flank : ACAGGAAGGGCATAACGATAACGATAAATTGAATGGAGGGGTGAAGCGGTTAGATTTAAATCAAAAGGTTAACCATAAAGTCCACCATTCGCTGGACTTTATGTTGTCAGTTACATGCTGTTTACTGATTATTCTCATGTTCAAATTCGATCCACGCTTTTTCTAATTCAATGAGACTGGCTGTGATTTTAGCTTTGTCTTGTTTTTGAATGATTAATTGTCGAACGTGCTCTTGCTGTATAAAAATATCCTGACGTTTATTGTCTACAAAGTAGTTTCTTAATCCTTTTGCCTGATCCATATACTGATGTCCAATATAAAACGGTGTATATTAAAATAGTACATTTATTGTGGTTATTCTCAAGTGTTTGATGGGCTGAATGGATAGTTCGTACGTTTATTTGCTTATGGCGTATCAAGACTGAAACAGTTTATGCCATTATATAAAGGGGAAGGGATGTGACAAATTATGCTAATTTTATAGATTGGGTCGGCTAAAG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-11] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [75.0-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //