Array 1 1-433 **** Predicted by CRISPRDetect 2.4 *** >NZ_AYYW01000049.1 Ligilactobacillus animalis KCTC 3501 = DSM 20602 NODE_97, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 1 36 100.0 30 .................................... AAACGTTTTTTGAGTCGATAAGCATCGCAT 67 36 100.0 31 .................................... CAAGAAACCATTTTATAAACGTGTATGGTTT 134 36 100.0 30 .................................... GAAGCCAATCATAAACTCGACTGTTTTTCC 200 36 100.0 30 .................................... AATGCACCAGAAATTGACTGGCCTTTCTAA 266 36 100.0 30 .................................... ACCTTTACTTGTGTATTGCCACAAATCATA 332 36 100.0 30 .................................... AATTCAAAAAGCGTCAAGTTAGCGTCAAAA 398 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== =============================== ================== 7 36 100.0 30 GTTTTAGAGCTATGTTGTTTTGTATGACTCCAAAAC # Left flank : | # Right flank : | # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTATGTTGTTTTGTATGACTCCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: F [matched GTTTTAGAGCTATGTTGTTTTGAATGCTTCCAAAAC with 92% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-2.00,-2.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.37 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], // Array 1 2105-21 **** Predicted by CRISPRDetect 2.4 *** >NZ_AYYW01000057.1 Ligilactobacillus animalis KCTC 3501 = DSM 20602 NODE_137, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 2104 36 100.0 30 .................................... CGTAAGTTGGGAAACAGAATTAAAGAACTG 2038 36 100.0 31 .................................... CTACTTTTTTGACAAAAAATTAATTACTTTC 1971 36 100.0 30 .................................... GTATGTTTATGAGAGTTATTTTGAAGGATA 1905 36 100.0 30 .................................... TGGTTACACTTCACTATCTCAAATGATCTC 1839 36 100.0 30 .................................... TCTTGATAATGTCTGCAATCACATCTAATG 1773 36 100.0 31 .................................... TGAGCGATCGCATATTGTACCTGCGTTGGAT 1706 36 100.0 29 .................................... ACATAGCTATAAATAATTTATCAATGAAT 1641 36 100.0 30 .................................... AAGCAAGATGTAAAAGATTTTGTCACAGTA 1575 36 100.0 30 .................................... TATTTGTGTGGGGGGGTAAAGCGAAATTCA 1509 36 100.0 30 .................................... ACAACGATCGGTAATCGCTTTGCTAATTTC 1443 36 100.0 30 .................................... AGCATCTGATTGTGATGTTTCGTTGGCGCT 1377 36 100.0 31 .................................... GATCAGCAGGGTTGATCGTTACAGTAGCTTT 1310 36 100.0 30 .................................... AAAAGCATTAATACTAAAGCCGTGTTTATA 1244 36 100.0 30 .................................... AATGGCATTAAAAATCTGTTTAGCGATGTT 1178 36 100.0 30 .................................... GAACGGCATGTCACTATCTTGAATATCGAT 1112 36 100.0 31 .................................... TATACTAAAACGTATTAATGTATACTTGTAA 1045 36 100.0 30 .................................... GCTGCGCATATATGCAAGGAAGATTGGCCA 979 36 100.0 30 .................................... AACAATTGACTCAAACAGCTTTGAAGAATA 913 36 100.0 30 .................................... ATTGGCGTGTTTATTGGATGGGCGGTGAAT 847 36 100.0 30 .................................... GATGTTATTAGCTGTTTTGAATGGTGTCAT 781 36 100.0 30 .................................... GTAATTTTGGCCAAAATGCTGATGGAGGTT 715 36 100.0 30 .................................... TGAGGTAGGCTTGTTCGGAGGTGCTGATGA 649 36 100.0 30 .................................... GTATCGGCGGATCAGATAAAAATTAGTAAG 583 36 100.0 29 .................................... AGTTTTAAAGAGAGTTTTCACTGTAAATA 518 36 100.0 30 .................................... GAGCCAGAGTCTCTTAAATCTGAAAGCATT 452 36 100.0 30 .................................... TTCAATCTTTAACACCTCTTCTTTCATTTC 386 36 100.0 30 .................................... GTCGCTATTGTCCACTAATTACTCAAAAAA 320 36 100.0 30 .................................... AAAACAAAGTGCTTTTTGAAGGCCGTGTTT 254 36 100.0 30 .................................... TATTCAGCAACAAGTTCGGTGACTACCTGG 188 36 100.0 30 .................................... AAGGCCAAGTTAGGAAAGGGGGCTAGTATA 122 36 100.0 30 .................................... TATTCAGCAACAAGTTCGGTGACTACCTGG 56 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== =============================== ================== 32 36 100.0 30 GTTTTAGAGCTATGTTGTTTTGTATGACTCCAAAAC # Left flank : TATTCGTCTAATTCCATTGTTTTGATCCGGTCAAGTGGCCATTCTTTCAAAAATTCTTTTGCCAACTGTATATTTTGTTTCTTCCACGCCTCTGCTCGTTTTAACAGTGCTGATTTATTTTCAAAATACCAATCCGAAAAGTGTTTTATATTGATTTTTACCATCCTGTCACCCCATCGTTTTTATATAGCATACAATAAGCTTAGTAGCCGATGCACCTAAAACGCATATAAATTTAGACAAAAAAGTTCCATTAGAAATTTTTTCTAATTTCTTAAAAAGCATCTCAATAGTTAGGTAGTGACTCTAACAATTGAGATGCTTCATATTAATCTAGTACTGAAAATTTTAGACAGTTATATTTTTGCTTAACGTAGTGTATAATTATAATTGAATTGTGTATTACGTTAATGAAAAAACATGGAATCATACAAAACTGAAATCTTGCTAGGATAAGTAGCGCGATTACGAAACCAAAACGACATTTTTTTGCATTTGAG # Right flank : CAAACGTTTTTTGAGTCGATA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTATGTTGTTTTGTATGACTCCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: R [matched GTTTTAGAGCTATGTTGTTTTGAATGCTTCCAAAAC with 92% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-2.30,-2.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [23.3-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.77 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], // Array 2 11554-12513 **** Predicted by CRISPRDetect 2.4 *** >NZ_AYYW01000057.1 Ligilactobacillus animalis KCTC 3501 = DSM 20602 NODE_137, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 11554 36 100.0 30 .................................... TGTGATCTTTGTGCCCGCGTCTCGTAAACG 11620 36 100.0 30 .................................... GGCAGAACAGGAGGCTGCTACAATGAATGA 11686 36 100.0 30 .................................... ATGTTCCCGTATCATATTCATCTCGCATAT 11752 36 100.0 30 .................................... CACTAGCACGTACATTGCTGGTGGGCTTGA 11818 36 100.0 30 .................................... AAACATCATCGAACCGTTTCTTTAAGCGAT 11884 36 100.0 30 .................................... AATTTTTTACTCAATCATGTTGACCTAGCA 11950 36 100.0 30 .................................... ACTGTCTTTTTGTTATCGACTGTTAATTGT 12016 36 100.0 30 .................................... ATGGCAAAGTATCGTTTGACTGGACAGAAG 12082 36 100.0 30 .................................... TAAATGCTTAAATGATACAGCTTCGTGCTA 12148 36 100.0 30 .................................... ACGTTTCGATTTTCTTCATCTGGTCGGTGT 12214 36 100.0 30 .................................... ACCCAGAAGATACGGAAACGAGGATCGCAT 12280 36 100.0 30 .................................... CTATAACTATTTCCCAAGCTTTGACAATAT 12346 36 100.0 30 .................................... ATCTGAATGTGGACAAGGACGACGGTACAT 12412 36 100.0 30 .................................... CAAAGGTATCAACGGTGTTGTCCATTTCTT 12478 36 80.6 0 ........................AA...TT.GT.T | ========== ====== ====== ====== ==================================== ============================== ================== 15 36 98.7 30 GTTTTAGAGCTATGTTGTTTTGTATGACTCCAAAAC # Left flank : TGCGGATCTGGAAAGACAATTTGGTGAAAAAGAGGAAGTTAAAGACAGACTTGAGTCATTAGCAGTGGAGATAGCAAATATTATTTCGAGTGAATGTTTAGAAAATGAGTTAGATCTTGAGTATGATGAGATCACACTGCTAGAATTGATAAAGGCGATGGGTGTAAAAATCGAAACGACGATGTCATCGGTTTACGAAAAATGTTATGAGATAGTGCAAATTTTCAAATACTTAAGTAAGAAAAAATTATTAGTTTTCTTAAATGTTGGTGCTTATTTGACAGAAAAACAAATAAGAAGCTTACTTGAGTACATTGGACTGTGCAATTTGAATGTCATATTCCTTGAGCCAAGTAAGTTGTATGACTTACCGCAGTATATTTTAGATAGTGATTATTATTTAGAGTATTTGAATAGCTCTTCGGAGTCATAGAAAGCGAAAATTTTGCTAGAATTAGTAGCGCAATCACGAAACCACTGTGCCATTTTTTGCATTTGAG # Right flank : TTTTCCGGTTGAGAATATGTGCAATTGAAAAATATTTTTACAGTATTTCTATTGACGGCAACTTTATAATTTGATATTATATTAGCGTTGTATTTGTGCATGCCACAACTGCAACCGCACGTTTTAAGTTCAAGTGCTCTCTGAGCCACTACATTACGGCGAGTCTAAGTAAAATACAAGGAGGTGCACATTAATGTACGCAATTATTGAAACAGGTGGTAAGCAACTTAAAGTAGAAGCTGGTCAAGCTATCTACGTTGAAAAGTTGGCTGCTGAAGCTGGTGAAAAAGTAACTTTTGATAAAGTTGTTTTAGTAGGCGGCGAAAACACAGTGATCGGTACACCTTTTGTTGAAGGTGCTACTGTTGAAGGTACTGTTGAAAAGCAAGGTCGTGCTAAGAAAGTTGTTACTTTCAAGTACAAGCCTAAGAAGCATCAACACACAAAGCAAGGTCATCGTCAACCATACACAAAGGTTGTTATCGACGCAATCAACGCAT # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTATGTTGTTTTGTATGACTCCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: F [matched GTTTTAGAGCTATGTTGTTTTGAATGCTTCCAAAAC with 92% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-2.00,-2.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.37 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], //