Array 1 19506-18338 **** Predicted by CRISPRDetect 2.4 *** >NZ_NNJL01000094.1 Vibrio parahaemolyticus strain D2_8 D2_8_contig094, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 19505 28 100.0 32 ............................ TTTTCATCGTTTCCGCTTCAATCAGTACCGAT 19445 28 100.0 32 ............................ TTCACAAAAGCCGGATTGGGTAGAAACGGGCG 19385 28 100.0 32 ............................ AATTTGAGCAGCAAAATAAATTGCTTGATAAG 19325 28 100.0 32 ............................ ATAAATAGAATCAACATCAGCCTGAAATTGAG 19265 28 100.0 32 ............................ TTAAGCTTTTCACCCTCAAGCGGAATATTACG 19205 28 100.0 32 ............................ CTGAATCAGGCATTGAATTTTCAAAACTAAAT 19145 28 100.0 32 ............................ GAACGGCTCCGAGGTGCTATATCATCACTCGA 19085 28 100.0 32 ............................ TGAATTAAATGCTTGGGAAAAGGCTGGCGCTT 19025 28 100.0 32 ............................ CGCGAAGGTTATCGCTTATGAGCCTAAGACCC 18965 28 100.0 32 ............................ TGGTTGTTGACCACTACGCGACCCTGAGTGAC 18905 28 100.0 32 ............................ ATCTCGCATAAAATCAAGCCACTCCTCCTCAT 18845 28 100.0 32 ............................ TTAACGAAGGCGTTTCTGTTATTGATGCTGTA 18785 28 100.0 32 ............................ ATTTATACAGGTCTTTGAACGCACGGATATAC 18725 28 100.0 32 ............................ AATCTGTTGGTGAACAGGGGCGTGATGGCCGT 18665 28 100.0 32 ............................ AAGTAGAAGGCACTCTGTAACCGTGCTCTCTA 18605 28 100.0 32 ............................ CTTACCATCACCGACACAAGGTTTGGGATGAC 18545 28 100.0 32 ............................ TCAAGAAAATCTTCGTGCTTCGCTATACATTC 18485 28 100.0 32 ............................ GCTTGGCCCGCATACGCACGTTCTTTCATGAT 18425 28 100.0 32 ............................ AGAGTGGTCTGGTCAGTACCATCCACATCATA 18365 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 20 28 100.0 32 GTTAACTGCCACACAGGCAGCTTAGAAA # Left flank : GAACGATGTGACTTACGTTAGCTTTACTCGGAAACAAGTTAAATCACCTGAGAGAATTGAACGCGATATGCAGAAAAAAGCTGAGCTTTGGGCGGCTGAATCTGGCAGGTCTCTACAAGAGTGTCTTGTGGAGCTGGAAAAGACTAAGCCGACCTCGCTCTGTTCATTACCGTTTATCTATTTACATAGTCAACAGACCAAACAACGTTCACCCGATAAGAGCAGTAGATTCCCGTTGTTTATTGAGATGAATGACATCGGAATTAAGCAAGAAGGGCAGTTTGATTGTTATGGACTGAATGCCAAACTTAATCAACAAGGCAGTCTGGGAACTGTCCCACAATTTTAACCAACAAAGGGTAAGTTTTTACCCTTTATTTTTGCTCTTTAAAAATAGTTATAAAATACATAGAGTTACAATAGATAGAATTTGGCAAGGTAAAAACATGATTTTTATCCTAACTATCTGTTGTAACTTTCTTTTATTGATTTATTCTATG # Right flank : GATCACAGTTTCATCAGCGAGTAGAAGAGCAGCAATTGGAGCTGGATTAAACAAAGGTCCCTTTTAAAGAGCTCACACAAATTCACCTTCTTTAGAAGGTGGTTATATACATAATACATGAGTCTGAATTTATGGTAAGTTTAACTCGCTTAGATCTGTTACAAATAGTAAAGTGTTAATTACTCGTAATGTTGACTCGTCTGGTTTCATAGCATAAGCGCGTTTGTATGATGTTGCGGCTAAGTAGGTTTTGCCCTCAACTTCAGCGATTTTGCCAGCGATGATGTTACTGAACCAAGACTCTCGTATGTTTACAGCTTTTGTTAATAGAGTTTTAGTGTTGTTCAAGTCTTCTCTATCGAAGGAACAGACCGCAAGAGCTTCGTAATATATAGGAGCATGGAGCTCATCTCTTATACTCAACAAACTATCATACATCTCCTTTAGCTCGTTGTCTGGAATTGCGAACGGCTGGATTGAGTTAAGAATTTTAGCGGAAA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTAACTGCCACACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: R [matched GTTCACTGCCACACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.40,-7.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [55.0-78.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.77 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //