Array 1 215043-212511 **** Predicted by CRISPRDetect 2.4 *** >NZ_LWIS01000025.1 Salmonella enterica subsp. enterica serovar Tennessee strain MOD1_SALC_30 contig0026, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 215042 29 100.0 32 ............................. GAATTCGTTATTTTTAAACGAAATCATTATCA 214981 29 100.0 32 ............................. AATGCAACTGCAGTATCCTTACGCCCAAAAGC 214920 29 100.0 32 ............................. GCAGCTATCGATGAGATGAATAACGCGATTTA 214859 29 100.0 32 ............................. TACACACCTAGCAATTAATTACGATTTTGTTT 214798 29 100.0 32 ............................. GAGGGTCGGTGCGCGGTATTAAAACACGCTAT 214737 29 100.0 32 ............................. TACACCAAATGGGGGCCAGCAAAGAAAATGCT 214676 29 100.0 32 ............................. TCGTTTATAGCTGAGAACAAGCTGGCGCTGAT 214615 29 100.0 32 ............................. CGCTGGCGCAACGAGTCGTACCTGTACGCCAG 214554 29 100.0 32 ............................. ATTCGACGCTCAGGCCGTTCTCTTTTAACCGG 214493 29 100.0 32 ............................. CCAAAAACATTGAGTGCTTCTTGTACGTTCAT 214432 29 100.0 32 ............................. CAGTTTGAAGAGCGCGCCCGACAGGAATATGA 214371 29 100.0 32 ............................. TTACAGACCGCTCATTTGTTATAAATATGTTG 214310 29 100.0 32 ............................. CCTGGAATGGTTTAACGGTGCAATCCAGGATA 214249 29 100.0 32 ............................. CTGGCTAATCTGCGTGTTGATGTTGTCCATGC 214188 29 100.0 32 ............................. GTCCCTACAACCGGGACCGCCCGCCCGACCAG 214127 29 100.0 32 ............................. CCGAACGCTCAACGGGGAGTGATCGAGAATCT 214066 29 100.0 32 ............................. CGATCAGGAAATCAAGGAGAAGCGGGTGCGTA 214005 29 100.0 32 ............................. ATGGAGCGCGGTGGTTACATCGGCGTTCCGGA 213944 29 100.0 32 ............................. GTCGGGATCTCGACCTTTTCAATTTCTTCTAT 213883 29 100.0 32 ............................. TTTGCGACATTTATATTAATGATTATAAATAT 213822 29 100.0 32 ............................. ACTTGCTTCATTGACATGCCTGCCACTGCTCC 213761 29 100.0 32 ............................. GCGCGCCATTGCTGAGGGTAAACCGGCGATTA 213700 29 100.0 32 ............................. CCAGCTCAATTTCGCCAACCTTCGCGCTAATG 213639 29 100.0 32 ............................. TCCGTCTCCGCCAACGCCTTTAGCCCATCCAG 213578 29 100.0 32 ............................. CTCTTTGATCTCTCCGTTTGCCGTTGAGTGGT 213517 29 100.0 32 ............................. TTGACCGGACTCGCGGTTATTCAACTAACCGT 213456 29 100.0 32 ............................. TAGAATAATTGTGTTTTTGCTACCAATGGTTG 213395 29 100.0 32 ............................. AATCTTCAGAGGACTCAGATCCTGATTACGTT 213334 29 100.0 32 ............................. CAGGCATAACTACACCTGTCAGGAGCCAATTA 213273 29 100.0 32 ............................. TGGTTACGTATACGCCAGATTCAGAAAAGGCC 213212 29 100.0 32 ............................. ATTCAAAAATTCAATATGAGGTTGGAAATTTT 213151 29 100.0 32 ............................. GTTGTGTGGGTACAGCCGGCCAGCGTCAGCAG 213090 29 100.0 32 ............................. TACGAATAAACAGATTTTTGCGATATCTCTGC 213029 29 100.0 32 ............................. CAAATGAAAAATGGTTTAAAGGAGGTCTGTAA 212968 29 100.0 32 ............................. TTTACCTGGTTCGTCTGGTTCAACTATATCGA 212907 29 100.0 32 ............................. ATCGAATGCTTTTGTGTGTTCTGCTGCCACTT 212846 29 100.0 32 ............................. GGGGCGTCACCATTTTTGAATTTATCAGCCGC 212785 29 100.0 32 ............................. ACCAGGCTACCCGCGCGGTAGTTCGTCGACAG 212724 29 100.0 32 ............................. AGCAATGATTGAAAAGCTGGCGATAAACAAGG 212663 29 100.0 33 ............................. ATAAATCTAATTTATTTGATTAGTAGTGCTAAA 212601 29 100.0 32 ............................. TCGCACAACGCCTGGATATCCGCCCATCGGCC 212540 29 96.6 0 ............T................ | A [212513] ========== ====== ====== ====== ============================= ================================= ================== 42 29 99.9 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTTATTGAAGATGTTCTCGCGGCAGGGGAAATTCAACCGCCGTTACCTCCTGAAGATTCACAACCCATAGCGATCCCTCTTCCTGTTGCGTTGGGAGATTCCGGTCATCGGAGCACCTAACGATGAGTATGCTGGTTGTCGTTACCGAAAATGTTCCTCCTCGTCTGCGGGGGAGGCTGGCCGTCTGGTTACTGGAAATTCGAGCTGGTGTGTATGTTGGTGATGTTTCCGCAAAGATCCGCGAGATGATATGGCAACAGGTTTCCGTTCTGGCAGATGAGGGAAATGTTGTTATGGCGTGGGCGACAAATACAGAATCAGGTTTTGAGTTTCAGACTTTTGGTGTAAATCGACGTATTCCGGTAGATCTTGATGGACTGCGATTGGTGTCGTTTCTACCTGTTGAAAATCAATAAGTTAGAGATCTTTAAAAATTAGGAAAAGTTGGTGGGTTTTTTGTGCGCTAAAAAAGTATTTAAATTCAATTGGGTAGATTTAGA # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 233036-231666 **** Predicted by CRISPRDetect 2.4 *** >NZ_LWIS01000025.1 Salmonella enterica subsp. enterica serovar Tennessee strain MOD1_SALC_30 contig0026, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 233035 29 100.0 32 ............................. CGCTACGAACTCTGGCAGAAGAGAGCGTTTAT 232974 29 100.0 32 ............................. AACGCTACCACCCGGCAGTAAAAGAGCCGACG 232913 29 100.0 32 ............................. CAGAACAGGAGCACGTTAGCCGCGTTGCTGAA 232852 29 100.0 32 ............................. GCATTCTTTCAAACGTTACTTCTGCTCGCGCC 232791 29 100.0 32 ............................. TTGTTGCAGGCGGGAGAACGCAGCGCGTACCC 232730 29 100.0 32 ............................. CCTGCCGTCGCCGTCGCCATATCCGGCGCTGT 232669 29 100.0 32 ............................. CCTGCCGTCGCCGTCGCCATATCCGGCGCTGT 232608 29 100.0 32 ............................. GGCCACTTATCAGCAAACCGGGCATCCAGAAC 232547 29 100.0 32 ............................. CGAGTCAACAGCGGTAGCCATTGCAGGCATTT 232486 29 100.0 32 ............................. GTTTGCCGTATCTTCGATCATACCGGAACGGT 232425 29 100.0 32 ............................. CTACCAGGCCCGTTTGTCTCAACCATGACCAG 232364 29 100.0 32 ............................. CCACGACTAACCGGTACTAATCCTGAGTTCAT 232303 29 100.0 32 ............................. TATGAGTTTTCAACATCACCAACTAGTCATGT 232242 29 100.0 32 ............................. GCCAAACAGGTTGAGATAGGGCTTCATTATGA 232181 29 100.0 32 ............................. ATGGAACAGGCCCAGGCTGCGCAGCAGCAACA 232120 29 100.0 32 ............................. TCAATAAAATCAATGATAAGCAGTGTCGTTAA 232059 29 100.0 32 ............................. AGAATCGCCAGCGGAAAGAGAAGGGGTTAGCG 231998 29 100.0 32 ............................. CGGGAGCACGGGTGTTGCAGCATTGCAGGAAG 231937 29 100.0 32 ............................. TGCGGCGCGGTAGTTGGCCTACATGATAGCCA 231876 29 100.0 32 ............................. GATGATCGTTTTTTTCGTTACGTCGCGCAAAT 231815 29 100.0 32 ............................. CACCTCAGATGTTTGGGGTGCAATTTGTAATG 231754 29 100.0 32 ............................. AGCGGCTAAACCTGCCGGTTATCGCTGAGCAG 231693 28 89.7 0 ............T...........G-... | ========== ====== ====== ====== ============================= ================================ ================== 23 29 99.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCACCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAACCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTGGTGCTGATAAAAAGTAGTTTATAAACAATGATATACGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTTCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGGGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //