Array 1 2216854-2218742 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAEKFW010000001.1 Yersinia pseudotuberculosis strain FDAARGOS_1047 000000F_arrow_pilon, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 2216854 28 100.0 32 ............................ ATGAAGCCCCACCCATTCCAATTAAATAAGGT 2216914 28 100.0 32 ............................ CTAAAAAGAGTGTTGAACTTAATGCTGTAGCA 2216974 28 100.0 32 ............................ AACTCTATCTACTAATAGTTGGCCCTCGGTCG 2217034 28 100.0 32 ............................ GCAATATCTTTTAGCTCTAATGTAAATTGCTC 2217094 28 100.0 32 ............................ TCTTGATTGCCTATCGAGCTATCAAGGTCAAA 2217154 28 100.0 32 ............................ ATGAAGCCCCACCCATTCCAATTAAATAAGGT 2217214 28 100.0 32 ............................ GTATCAAGGGGCTGATAGACACGACCCTAAAA 2217274 28 100.0 33 ............................ CGCCACGGTGAAAGAGGCTTACATCAACGCATT 2217335 28 100.0 32 ............................ GCCTCGTCGAGCAGGACATCAACAAACAGCAC 2217395 28 100.0 32 ............................ TTACCGCGCCGCCGCAGAATCTCAGCGTAAAT 2217455 28 100.0 33 ............................ CTAAACCCAATGTCTGATTATATAATCTAACCC 2217516 28 100.0 32 ............................ TTAACAGACTCAATAAACTGTAGAACGTTTTC 2217576 28 100.0 31 ............................ TTTACGAGGACTATTTCTGTATGTATATTGA 2217635 28 100.0 32 ............................ ATCGAACAAACCAGCTCTGCCGATCATGAAGA 2217695 28 100.0 32 ............................ AGATTATTTAATGAGTGTCGGAAATATGAATC 2217755 28 100.0 32 ............................ GACAAGCTAGATAAACAACCAAATGAAATATC 2217815 28 96.4 32 .................C.......... AATTCAGCCGACCGAGCAAGAACCAAACCAGT 2217875 28 96.4 32 .................C.......... TTCTGCAACAGTTCCAGTAGTCGGCGTAACGG 2217935 28 96.4 32 .................C.......... ATGCTTGCTCCGCCTTCGCTGCGTCCATGACA 2217995 28 96.4 32 .................C.......... AGAATCCGCCGTACACATCACGCTTACTTAAT 2218055 28 96.4 32 .................C.......... ACCATATTCATCCAGCGGGACCGCTGATGTTT 2218115 28 96.4 32 .................C.......... AGAAATGAATCTGGAATTTATCAAATAGATGG 2218175 28 96.4 32 .................C.......... AAAAAAGTTGTCGATATTAATGGAAAAACAAC 2218235 28 96.4 32 .................C.......... AATCGTATACATATCAAACTTATTAACTCCAA 2218295 28 96.4 32 .................C.......... GCACTGCCGGTATTCGAATCAAGGGAGAGGGT 2218355 28 96.4 32 .................C.......... AAGGGATTATTACCAGATACAGGTGAAACCAT 2218415 28 92.9 32 A................C.......... ATTTAACATCATATAAATCAATCACAGATAAC 2218475 28 96.4 32 .................C.......... CTGCAAGTTCCTTAACACTAATCGAATTGAAT 2218535 28 96.4 32 .................C.......... ATTAAAGGTGAGACTGACGGAAAATTAAAAAC 2218595 28 96.4 32 .................C.......... AACTTGAAACCTTCCCAGCAGTGACACTGGAT 2218655 28 92.9 32 A................C.......... TTACACGCTGGACGGCCAGGGAGACGAGAGCT 2218715 27 85.7 0 .................C...CC.-... | T [2218741] ========== ====== ====== ====== ============================ ================================= ================== 32 28 97.6 32 GTTCACTGCCGCACAGGTAGCTTAGAAA # Left flank : TTATAAGGCAAGCTCACGCTCATCATTAAGTTTATCAATCCGGCACAGTCTCTGTTGCCGGATTTTTTGTATTCAGAAAACCAGGTCAGAGCGTATTGCCGTGCGGCTACAATCTCAATCGTGATTAGGCTAGAAAAATGAATCGAGGTGATGAACTCCAGCAGGCAGACCCTCAACTCGTCGTGGGAAAATACCGGATAGCGGATAATGCCGCCCCTAATTCGCAATAGACGATACCGAGTAACCGTACCCATTAGCCATAGTATTACTTTTTTAGTTATTTAATTTGGCAGGCCAGAAACATGGGCCACGCCACCACCCCCCTCCTCAGAAGAGTAATCATTAGGGTTACGTCCCCCCGATTCTTGTGACCCTCTTTTTATCACTATGACTAACGTATTGATTTTTATGCTACTCAGGTATTTCACTAAAAAAAGGATTTTTACGCATTTTGCGCCATTGCTCATTGATAAACATCGGGTTATCCGTATTATCTTACT # Right flank : ATCTCAGCTCTCTGGCGGCGTTTTATCTGCAAATATTAACTCACTAATCCCTTGGCATATTCAAACAACGCTTTTAGCAGCGCAAGTTTCTCTTTATCGTCTTCATACTGGTTATAAAATTGTTCCAGTTGCAAAACATAATCTTGTACCCGCTCAGGGCTAAGCGCTTCACGGCGATGCTGTAACCAACGCTGTTGTTCACTGTTATTCAAGGTATTTGGGTAGTTACGGGCGCGGAAGCGGAATAGCAGGGCCTCCAACCGTGGGTCCTGAAATGTCAAATCCAGTGCTGGCAGATTTTGTGGCTCAGTTTGCTGGATAATCTTCATGGTGGCGCGGTCAGCATCACTGAAAAAGCCGTTATACAACTGTGTATCCACATCATCGGTAACCGCGAATGGCTCAGCTTGTGCAAACAGCGCGACCACTTTTTCACGCACCTGCGGGTTTTGCCGCAGCAGTTGCAGATTTTGCAAACAACGCTGGCGATCAATCCCCAA # Questionable array : NO Score: 5.90 # Score Detail : 1:0, 2:3, 3:0, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.76, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGTAGCTTAGAAA # Alternate repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGCACAGGTAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-6.00,-1.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 3155846-3152634 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAEKFW010000001.1 Yersinia pseudotuberculosis strain FDAARGOS_1047 000000F_arrow_pilon, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 3155845 28 100.0 32 ............................ ATATAATAATTCCTATTAAATTGAGTCAATAA 3155785 28 100.0 32 ............................ TCTAGTACGCCAATTTTGTGATTCTTTATAAT 3155725 28 100.0 32 ............................ AATTAAATAAGGTAAATAAGGTAGCATGTTAT 3155665 28 100.0 32 ............................ GTAATCAAGAGAGTATATCTAGGGATTTACAA 3155605 28 100.0 32 ............................ AATACTCGTAAGCGCGTTATACAAGATTATGG 3155545 28 100.0 32 ............................ ACAATCTCAAATTAAAGAAGACACCGCTTTTA 3155485 28 100.0 32 ............................ TTGATAAATATAGTTAAATGGAAAGTGAAAAC 3155425 28 100.0 32 ............................ CTAACTTTAAATAAAGGTGATTTTGTTCTAGT 3155365 28 100.0 32 ............................ AATTATTACTGTTGATAAACTTATCGATACTG 3155305 28 100.0 32 ............................ TACTCTGAAACTACGGAGTGCGATTATATTTC 3155245 28 100.0 32 ............................ CTACTAACCCAGATTATTTAATGAATGACATA 3155185 28 100.0 32 ............................ ACTTACATCAAAAACATTTCTAGATGCCCATG 3155125 28 100.0 33 ............................ CGGTTGGGCCATCTCGTGCACTGACCTGATAGC 3155064 28 100.0 32 ............................ TGCTGCAAACTTAGCTACTTCAGGCAAACATA 3155004 28 100.0 32 ............................ ATCCGCATGCATTCGTTGAAGCCACTCAATGC 3154944 28 100.0 32 ............................ AAGTAACGAATAGGCGCTATTCCAGCTCCCGC 3154884 28 100.0 32 ............................ TTGATATGGTCATGCGGGGTTATCACATTGGC 3154824 28 100.0 32 ............................ ATTACCGGCAGTCAATCTGCTGAGGAATAGTT 3154764 28 100.0 32 ............................ TAAAAATACTGTAGTAAACAATACTTTTAGTG 3154704 28 100.0 33 ............................ AAGTTAAACAGTATGTGGACGATGAAATAAGTA 3154643 28 100.0 32 ............................ GCCCCAAGTACCACCAATAGACTCCCAATACT 3154583 28 100.0 33 ............................ CAGTCTGGCGGCGCATTATCTGGTTTTATGTAT 3154522 28 100.0 32 ............................ CTATCAGCTTCGAATACAGAGCGCAGATAGAA 3154462 28 100.0 32 ............................ ACTCAGAAATATTTTTATTTGGCCCTATTTTT 3154402 28 100.0 32 ............................ AGAGAGTCCGCTACGGCTGGCAATGATTGTAT 3154342 28 100.0 32 ............................ TGATAATAAAACAGGTTTTTTGAGTCCATTTG 3154282 28 100.0 32 ............................ ACACGATTCAACTACAAAAATGACTCGTTTTA 3154222 28 100.0 32 ............................ GTGTAGACGCTTATGCTCAGGTTCTACTAATA 3154162 28 100.0 32 ............................ TATCTCGGCTGTGAAGAGGTCGAATACACCGA 3154102 28 100.0 32 ............................ GTTAGCGCCACCGGTCTTAATAACGCTACAAC 3154042 28 100.0 32 ............................ CCCTCTATGTTTGACTCACTACACTCTGAGGG 3153982 28 96.4 32 .C.......................... GTGCTAGCTAATCACGCTAGTAGTGTGCAAGG 3153922 28 100.0 33 ............................ TTCTCCGGCTCGGCGGCTAGCTGCCTGATTATT 3153861 28 100.0 32 ............................ ATGAAACATGCAATCAGCACGGCAATAGATTT 3153801 28 100.0 32 ............................ ACAGGAAAAAGATGAAACCGAGAGGCTTGAGG 3153741 28 100.0 32 ............................ TTCACACACTGCAAATGGACCTTATTTCTAAT 3153681 28 100.0 32 ............................ ACCGTGCAAGTCTGGCGGGTTGGTTTCGCCAC 3153621 28 100.0 32 ............................ GTTTTAATGTGAGAAATAGAGCGCATCCACGC 3153561 28 100.0 32 ............................ AATCTGGATAGCGCATATTTATCCTGTTTATT 3153501 28 100.0 32 ............................ ATGGTGTCATCATCAATAATAAAACCAAATGA 3153441 28 100.0 32 ............................ TTTATTAATTGAGTTTGCGCGTATACCCATTT 3153381 28 100.0 32 ............................ CATTAATAGAGGTATAAAAGGGATCATATTAT 3153321 28 100.0 32 ............................ ATAGACTCCCAATACTCACCCAACAATTTAAA 3153261 28 100.0 32 ............................ ATTATAATAATCGTGATTGTCTTTAAACGCTA 3153201 28 100.0 32 ............................ AGTGTTCTGTATTAATTTGCCTTCACATCTAA 3153141 28 100.0 32 ............................ AAGTTAAACAGTATGTGGACGATGAAATAAGT 3153081 28 100.0 32 ............................ AATTGAAATAATGGTTACTGGCAACGGGCAAG 3153021 28 100.0 32 ............................ ATTAAAGAATAAATTGTATTCTAAATAGTTGT 3152961 28 100.0 32 ............................ TACAGGAGGTGATCTAAATCTCAATCCGGTAG 3152901 28 100.0 32 ............................ ACGTAAACGAGAATATAGACACCTTCCTGATC 3152841 28 100.0 32 ............................ GCTAATCATGCTGCTAATGGTGCCGCGCGAGA 3152781 28 100.0 32 ............................ ACTAATAGTTGGCCCGCTGTAGGCTCGTCCGC 3152721 28 100.0 32 ............................ ATCCGGCAGCGCATCAAACTCAAGAACATCGC 3152661 27 85.7 0 ...................A-.A.T... | C [3152637] ========== ====== ====== ====== ============================ ================================= ================== 54 28 99.7 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : ATTGTTGCCCACGGCGCTGGAGGGCGGCCAGAACTACACGGTGTAGCACCAGATGGATCATCACAGAAATCAATAATATTAGCCCAATCACCATCGTCAATGACATCACATCGGAGAACTCCATCCCCAATCTTTCCAGCCACTGGCTTATTCTTTGTTGCATCACTGCTCCTATAAAGCATCAATCTGACTAAAAGGCCTTAGCCTAAAGGCTATAGGCGCAGGGGGGGCACCTGTTTACCCTTTTTTACATTGTGGTTCTGTATCTTTGTTCGATTGTTGCCCAGCGAGGGGAGAGACATATTTATAGGCTGTGGTTTATGACATGGTTTGTGGAATTGTACTGTGGTTTTATTATGAGTTATGTTCTGACCCTATTTTTTTAGCTACTGCTAACTCATTGATTTTACATTGTGGTTATCGGTGGTCTAAAAAAAGGGTTTTTTCCCCATTAGCGAAATAAGTATTTTACAAACAGGATGTTATCGTATTATCTTACT # Right flank : TTCTGGGCTATGCGCTGATGCTATTTGGGGAGCAAAATTGCGAGCGGAAGCGCATTTTGTAACTGACAACAGGGAGAATGGCATCTTTTATTACTGACTTTATGAGTATTAGAGTAGGGTAAATAGCAGGTAGCATATCAAGATATACCCGTCATACTTCAAACTGAATGTATGTTGGCTGCGCTCAATTATCCCGGTCACTTACTGGTGTAAGTGCTTGGGGATTTACTCAGTTGCTGGCTTCCTGCAACTCGAATTACTTTGGGTATAGAGAGAGTTATTTTTTGGAAGAATATCTGCTAATAAAGCGCTAACGGAAAAATAGCGCGGTGGATATCCCGCTAAGGAGTTTTTTGGCTATGGAAAACGCTATTCATTCCTCTGATTTGAAAACGATCCTGCATTCAAAACGATCCAATATTTACTATTTAGAATATTGCCGCGTATTGGTTAATGGTGGGCGAGTTGAATATGTCACCGATGAAGGTAAACAATCCCTT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //