Array 1 20872-22581 **** Predicted by CRISPRDetect 2.4 *** >NZ_LJNV01000038.1 Pseudomonas aeruginosa strain ATCC 33349 scaffold_37, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 20872 28 100.0 32 ............................ TCATCTCAACTGCGCCAGCTCGCGCGACAACT 20932 28 100.0 32 ............................ TGAGTGGTGATGTTGACCTGCATGGGCATGGC 20992 28 100.0 32 ............................ TGGACGACGCCGACGACGCGATCATCGTCGAC 21052 28 100.0 32 ............................ CATCAGGCGAGGATGGGCGGCGATTGCTTGCT 21112 28 100.0 32 ............................ TACAAGAAGGACACGCCGATCAAACTCGGCAC 21172 28 100.0 33 ............................ AGACGCTGCGCTTGTTCCGCGTGGCGCTGTAGT 21233 28 100.0 32 ............................ TTGCCACAGCTCACGGCAATCAACGGCAGAAC 21293 28 100.0 32 ............................ GCACCGATACGCAGAAGCTGCTGGATGCGTAC 21353 28 100.0 32 ............................ GTAGGCCTTGGCAATGGCCATGAGATGCTCAT 21413 28 100.0 32 ............................ TCGTCCATCCGTGCCCGGCACATCCTGCGGTA 21473 28 100.0 32 ............................ TGCTGAACGAAGGCAAGACCGCAGAGGCTGCA 21533 28 100.0 32 ............................ CACGCCGGAGGCTGGCAAGGCGATGGTGCGAT 21593 28 100.0 32 ............................ AGGGCATCGATCCGTGCGTTAAGCAACTGGAC 21653 28 100.0 32 ............................ GTTTCGCGCCGGGGCCTGGCCAAGCTGCTGCG 21713 28 100.0 32 ............................ AGGAGCTGGCTCAATTGGACGACCTTGGTTCC 21773 28 100.0 32 ............................ AGTGCGGTCAGACCATTCACGCCACACTTGCT 21833 28 100.0 32 ............................ TCCCTGCACCGGAGTGGTATCGAGCAGCCAAT 21893 28 100.0 32 ............................ TGGGCGAGATCGGCGCGTAGCCGTAAGGCGAG 21953 28 100.0 32 ............................ AGAACGAGCCACGGGTATCGGCCTTCGACTCA 22013 28 100.0 32 ............................ TCTTTGCAATCTACAACAACCCTGATCGACGA 22073 28 100.0 32 ............................ AGTTGGCGAGCTGGGCAACGTTGCTCGTCGAA 22133 28 100.0 32 ............................ ATGTTGTTCCTGGCCTCGGCGATCTTCTGGTC 22193 28 100.0 32 ............................ CGGATGAACTGCTCAGTGTTCATGCTGCCACC 22253 28 100.0 32 ............................ AGTTCTTCGTCAAGCACGTAGGGCGACTCGGG 22313 28 100.0 32 ............................ ATCACCGCCTTGACGCCGACGAAGGCAACAGC 22373 28 100.0 32 ............................ GTCGCGACAAGACCGAACCCGACAGAGAACGC 22433 28 100.0 33 ............................ TCGGGGCATGGGTCAGCCTCGCCGCGGTGCCGT 22494 28 100.0 32 ............................ TCCAGTAAGGCCAGCTCGGTCACGCGCATGCC 22554 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 29 28 100.0 32 GTTCACTGCCGTGTAGGCAGCTAAGAAA # Left flank : ACATGTGTCCGCGTAGCGCCACCCTGTACGTGGACACCCATGCACTCCCCACGCACTTGTTCGACAACGCGAAAGTGCGCTTGAGGTCGGCGATCAACATCCTGGCCATGACCCGTTTGCTCGATGAGAAAGAAGAGCCCGGCGGCACCCTGGCCTACATCAACGGTGCGTTGCTGTCGCTGCTCAGCGATGCCTTGTCCGAAATCGAGGCGGGCCACCCGAGCCTGTAGCGCCGCTCCCTGGCGCGACGCCCCCGGCCTGGCCGGGGGCTTTGCGGCATCGCCCATCACAAGACCTTTCGCGCCCGAACGGCACGCTTGATCGCCGTCCCGGTCCTCGCGAAACGGCCGCCAATTGCCCGAAGCTTCCGACCCTTTTTTCGGACGATTTCTTACGCCCTTATAAATCAGCAAGTTACGAGACCTCGAAAAAAGAGGGTTTCTGGCGGAAAAAACTCGGTATTTCTTTTTCCTTCAAATGGTTATAGGTTTTCGGAGCTA # Right flank : ACTCGAACCCACCTCGGCCACAACAGCCGCCGGGTTCGCTGCCGTCTAGGCAGAACCACCCTCCCCATCCCACTACCAAACATCCGAATATAAAGTTCCTACCCCGCCCGCCAGCCTCGCCCGTCCACGACAATGTGCCCCGCTTGGAAGCTCACGCTCCTCATACAGACGAAAACGGGGTAGCGGCAATCGGCCATATCCGCTAAACAGTTGCCTTGGCGCAGAATTCGATAGATCCGATAGGGACAGGCCACGGTCAGCATGGACGACATTTCTCCCAGCGAACTGAAGACGATCCTTCACTCCAAGCGTGCCAACCTGTACTACCTGCAACACTGCCGGGTACTGGTCAACGGCGGGCGGGTCGAGTACGTCACCGACGAAGGCCGGCATTCGCACTACTGGAACATCCCCATCGCCAACACCACCAGCCTGTTGCTGGGCACCGGTACCTCCATTACCCAGGCAGCCATGCGCGAACTGGCCAGGGCCGGGGTATT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTGTAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTGTAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [61.7-31.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 31794-31106 **** Predicted by CRISPRDetect 2.4 *** >NZ_LJNV01000038.1 Pseudomonas aeruginosa strain ATCC 33349 scaffold_37, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 31793 28 100.0 32 ............................ TCCATCATAGAGAAACCCCGCTCAAAGAGGCG 31733 28 100.0 32 ............................ AAGCTCTGGGACATGGATGATTTCAGGTTCCA 31673 28 100.0 32 ............................ TTCGTCTCCGAGGTAGATATCGCTAGCGTTCA 31613 28 100.0 32 ............................ TCGGCATTGCCGAGCGCTTCGATTGATGTGTA 31553 28 100.0 32 ............................ AATCGGAAACGGGGCCGTGATCGTCCGCCATT 31493 28 100.0 32 ............................ TCCCGCGGATACATGATCTGGTGGTGTCGCTC 31433 28 100.0 32 ............................ AAGAGGCTCACATCGCTCATAGCGTCCTGGGC 31373 28 100.0 32 ............................ AGAAGGCCGGGGTCCGTGTGTGGCGCATTGAC 31313 28 100.0 32 ............................ AATCCAGGTGACGTCGTGCATCTGGGACTCGT 31253 28 100.0 32 ............................ TTACCTTTAAAAGGCTTTAAAAGGCCTTTTAG 31193 28 92.9 32 .....................A..A... TGTCCCGAAGTTCATAAGCGGGCTTCGGGCGA 31133 28 75.0 0 T.........AC.....TC.TC...... | ========== ====== ====== ====== ============================ ================================ ================== 12 28 97.3 32 GTTCACTGCCGTATAGGCAGCTAAGAAA # Left flank : CGAAGTCGTCGAGGACGAACCAGGCCTGGTCGTCGATCAGCAGCGCGCGCAGCAATCGCTGCTGTCGGAAGAAGTAGTGCGGGGCAAGCTGGGTATGGCCGTGCATGGGAGAAATCCTTCTCTGAGCTGTCCGCTGCCTGGCTTCTGCCGGCGCGGCAGGGAGACAGGCCGCTCGTGGGTGTTGGGCCAGCAGGCTGTGGCCTGCCGGGAACCGAAGTCGCCGGCGAAAAAAGCCTACTGACAGCGCCTGTAGGACGGCAATGGCTAAGCCTTGTACGAAGTCTCCGATGGCACAAGCCCGCTGAACAGCTAGGCCGTTCTGAACATTACGCCGGCATGGAGAAAACAGGGGATGGACGCTATGCTTGGGAGCCCTTTTTTTGGTGGTTTTTTAAAGCCCTTTTAGATCAAAGGGTTAGAGATTGTTGCAAAAAGAGGGTTTTTCCGGGCTTTGGCGCTGGAGCCCTTGGAGCTTGGAAGGTTGACGGGGTTTTGGTCTA # Right flank : CGGCCAGCAGCCCTGAAGTATCGATTGATGCGGTTCGCTGTCGGCCGGGGGTCACCAGTCGAAACGAAGTCCCTTTCCATGGGACTTCGTTGCGGACATGCCGATGAGGCGCTGACGGGGTTCTTCAGAACCAGGGAACGAAACCTCCTTTGCTCAACCCGTAACAGGTGAATCCTCCTTCCTCTGCCGTCGCCTGCAACGGCCCGTGGCGGATGAAGAGACGGAAGTGCTGTCCGGTGCTCTGGCTGCGTAGCGTGACGAAGGGCAGGTCCAAGGCTCTCGCGACCGTATCGGGAATGCGTTTCCGAGCCTCCTCCTCACTCAGATCGTGCCGGCGCATGAGCCGCCGCCGCAGACGTTCCGGATTGCTTTTCGCCTGAACCCGACTGACCTGACGGTACGGTGTGGGGTGAGGCACGACTGCCGGTTCTCCGAATTGCAGATGGTCCCGCAACCCTTCCAGCCAGGGCCGGGCGAGCAGGGCACGAAGGTCGTCCGCC # Questionable array : NO Score: 6.12 # Score Detail : 1:0, 2:3, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: R [matched GTTCACTGCCGTATAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [35.0-43.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //