Array 1 1-1418 **** Predicted by CRISPRDetect 2.4 *** >NZ_CNBP01000019.1 Mycobacterium tuberculosis strain Bir 74, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ======================================== ================== 1 34 94.4 36 --.................................. CAGCGAAATACAGGCTCCACGACACGACCACAACGC 71 36 100.0 37 .................................... TCTTGACGATGCGGTTGCCCCGCGCCCTTTTCCAGCC 144 36 100.0 37 .................................... AGGTTCGCGTCAGACAGGTTCGCGTCGATCAAGTCCG 217 36 100.0 35 .................................... TCGGGGAGCCGATCAGCGACCACCGCACCCTGTCA 288 36 97.2 38 ....................T............... CTTCAGCACCACCATCATCCGGCGCCTCAGCTCAGCAT 362 35 97.2 36 ............................-....... CGCCCCGGCGTTTAGCGATCACAACACCAACTAATG 433 36 100.0 38 .................................... CCTTCGACGCCGGATTCGTGATCTCTTCCCGCGGATAG 507 36 100.0 36 .................................... CAGCGAAATACAGGCTCCACGACACGACCACAACGC 579 36 100.0 35 .................................... CCGGGGAGCCGATCAGCGACCACCGCACCCTGTCA 650 36 100.0 37 .................................... CTTTTGAGCGCGAACTCGTCCACAGTCCCCCTTTCAG 723 36 100.0 36 .................................... CCTCATGGTGGGACATGGACGAGCGCGACTATCGGG 795 36 97.2 37 ......G............................. TGGACGCAGAATCGCACCGGGTGCGGGAGGTGCAGCA 868 36 100.0 35 .................................... CCGACGGCACGGAGCTTTCCGGCTTCTATCAGGTA 939 36 100.0 38 .................................... CTTATCACTCCCGACCAAATAGGTATCGGCGTGTTCAA 1013 36 100.0 37 .................................... CGGTTCGCGTCAGACAGGTTCGCGTCGATCAAGTCCG 1086 36 100.0 40 .................................... CCGGCGATGGCCAGTAAATCGGCGTGGGTAACCGATCCGG 1162 36 100.0 35 .................................... CCCCCGTGGATGGCGGATGCGTTGTGCGCGCAAGT 1233 36 97.2 38 ..................A................. TTGAACCGCCCTTCGCGCGGTGTTTCGGCCGTGCCCGA 1307 36 100.0 40 .................................... CCATATCGCCCGCCACACCACAGCCACGCTACTGCTCCAT 1383 36 97.2 0 ...C................................ | ========== ====== ====== ====== ==================================== ======================================== ================== 20 36 99.0 37 GTCGTCAGACCCAAAACCCCGAGAGGGGACGGAAAC # Left flank : | # Right flank : CCCCGACGACTGGGTCGCCACCGCGTCTGTTGACCGGCATTCAGGATGAGCATGATGGCGGCGTTGACGGTGAGGACGTTTGGTCATGAAATGACCCCGCCGGGAGATGTCCGGCGGGGTCGGTGGTGTTCGGGGTGTCGGTGTGGTGTTCAGTCTGCCGTGACTTCGGCGATGGCGGTGCGGGTGGTGGATTCGTCGACGATGGCCTTGTCGGCGGCGAAGGCGGCGACGAGGGCTTGCAGGGCGAGGTTGTTGACCGCGCGGGGGTAGCCCCGGCTGGTCTGGTGGATCAACCCGATGGCGTCGTCGGAGAACAGGGCATCGTCGCGTCCGGCTAGCTTGAGGTGGTGGCGTAGGTAGCTGCCGGTGTTGGTGTCGGTCATGGGCGGCATGGCATATCGGAGTCCGATGCGCTGGTCAAGCGCGGCGAGCACGCCGAGTTTCATCCGCCGCCGCAGGGTGGGTTGGCCGATGAGCAGGCAGGCGAACGGGCTTGACGA # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGTCAGACCCAAAACCCCGAGAGGGGACGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [12,2] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.70,-6.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.74,0.41 Confidence: LOW] # Array family : NA // Array 1 124168-124335 **** Predicted by CRISPRDetect 2.4 *** >NZ_CNBP01000005.1 Mycobacterium tuberculosis strain Bir 74, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ======================= =================================================== ================== 124168 23 91.3 48 TC..................... TCGGGGAGCCGATCAGCGACCACCGCACCCTGTCAGTCGTCAGACCCA 124239 23 100.0 51 ....................... TTTATCACTCCCGACCAAATAGGTATCGGCGTGTTCAAGTCGTCAGACCCA 124313 23 100.0 0 ....................... | ========== ====== ====== ====== ======================= =================================================== ================== 3 23 97.1 50 AAACCCCGAGAGGGGACGGAAAC # Left flank : CCTTTGTCACCGACGCCTACGCTCGCAGGATCCTGGGCTGGCGGGTCGCTTCCACGATGGCCACCTCCATGGTCCTCGACGCGATCGAGCAAGCCATCTGGACCCGCCAACAAGAAAGCGTACTCGACCTGAAAGACGTTATCCACCATACGGATAGGGGATCTCAGTACACATCGATCCGGTTCAGCGAGCGGCTCGCCGAGGCAGGCATCCAACCGTCGGTCGGAGCGGTCGGAAGCTCCTATGACAATGCACTAGCCGAGACGATCAACGGCCTATACAAGACCGAGCTGATCAAACCCGGCAAGCCCTGGCGGTCCATCGAGGATGTCGAGTTGGCCACCGCGCGCTGGGTCGACTGGTTCAACCATCGCCGCCTCTACCAGTACTGCGGCGACGTCCCGCCGGTCGAACTCGAGGCTGCCTACTACGCTCAACGCCAGAGACCAGCCGCCGGCTGAGGTCTCAGATCAGAGAGTCTCCGGACTCACCGGGGCGGT # Right flank : | # Questionable array : NO Score: 4.90 # Score Detail : 1:0, 2:3, 3:0, 4:0.85, 5:0, 6:0.25, 7:-0.29, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : AAACCCCGAGAGGGGACGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,1] Score: 0.37/0.37 # Reference repeat match prediction: F [matched AATCCCCGAAAGGGGACGGAAAC with 95% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [33.3-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 494-1180 **** Predicted by CRISPRDetect 2.4 *** >NZ_CNBP01000081.1 Mycobacterium tuberculosis strain Bir 74, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ====================================== ======================================= ================== 494 38 100.0 32 ...................................... AGAAGGCGATCACTGGAAGCACGGCGCTTGCG 564 38 100.0 34 ...................................... TGGTCAAAAGCTGTCGCCCAAGCATGAGGCAAAA 636 38 100.0 35 ...................................... GGAGTCATCCGCGCGGGCCGGCGCGATTGTTGCCG 709 38 97.4 32 G..................................... AGAAGGCGATCACTGGAAGCACGGCGCTTGCG 779 38 100.0 35 ...................................... TGTCTCAATCGTGCCGTCTGCGGTGACACGCTCCA 852 38 100.0 38 ...................................... CGACGATTGGGACATCGACATCGACGCGATCGTCGACG 928 38 94.7 39 ...........T.........................G TGATCTTCTCTCCTGGCGAGGTCAAGGAAATCGATGTGG 1005 38 100.0 39 ...................................... CGAGCCGACCATCCGCATCACACCGAAAGGGTTGGCGCA 1082 38 86.8 23 .................................TCCGC GAAATTCACTGCGCGTTATTCAA Deletion [1143] 1143 38 97.4 0 G..................................... | ========== ====== ====== ====== ====================================== ======================================= ================== 10 38 97.6 34 AGTTTCCGTCCCCTCTCGGGGTTTTGGGTCTGACGACT # Left flank : GTTTCCGTCCCCTCTCGGGGTTTTGGGTCTGACGACCGGAGTCATCCGCGCGGGCCGGCGCGATTGTTGCCGGGTTTCCGTCCCCTCTCGGGGTTTTGGGTCTGACGACTGGCGATTTACGACGCTGACGGGAACTCGTGCGAATGTTTCCGTCCCCTCTCGGGGTTTTGGGTCTGATCCGCGAAATTCACTGCGCGTTATTCAAGGTTTCCGTCCCCTCTCGGGGTTTTGGGTCTGACGACCCGAGCCGACCATCCGCATCACACCGAAAGGGTTGGCGCAAGTTTCCGTCCCCTCTCGGGGTTTTGGGTCTGACGACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCGCCCCGAGCCGACCATCCGCATCACACCGAAAGGGTTGGCGCAA # Right flank : TCTATGGACAATTCGTCCAGCGTGTGGTAACAATGCCTGCTGATGATGTCAAAAGAACACAAACTCCTCTGCGCTGACAAGCCGTCCCCTTCCGTAGAACGTAACTGCCGCAACACCTCTTATCTTATAGATCCGGATGTTGTCGCAGTCGATGGCGAAGCGGTCGATACGTGCAACTAGTTTCGCGAGCTGGCCCTTCGTCAGCATCGCTTCGAATGCGGACTCTTGGACGCGATAGCCAAACCCGGCCAGGATCTTCGCAAGTGAAGCCCGCCGCCGGTTGTCGCTGATGTCGTATATTACGAGGACGAACATCTTGCCTATAGTGCCGCTGGACTCGTCCACTTTGAGCGGGAGATTGAAGTACTCCTCACGGCTGCGAGTGGGCATTTAGGCTCCGGATGGCTCGGAGGTGATATCGATATCGACGAGCCGCGACGGGTGCCCGGCTTCGATAACACGCACGAGGCTTTGCAGTTGCAAGTCGAGGGCGTACTGAA # Questionable array : NO Score: 6.08 # Score Detail : 1:0, 2:3, 3:0, 4:0.88, 5:0, 6:0.25, 7:-0.05, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : AGTTTCCGTCCCCTCTCGGGGTTTTGGGTCTGACGACT # Alternate repeat : GGTTTCCGTCCCCTCTCGGGGTTTTGGGTCTGACGACT # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,13] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-8.80,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [23.3-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.64 Confidence: LOW] # Array family : NA //