Array 1 423453-424945 **** Predicted by CRISPRDetect 2.4 *** >NZ_OEXS01000002.1 Salmonella enterica isolate STY4, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 423453 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 423514 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 423575 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 423636 29 100.0 32 ............................. AAAAAACAGAAGAACGGCAAGCGGCACCTCAA 423697 29 100.0 32 ............................. CGTCAGCGCGGTATTGAGGCCGGGGACCGCCC 423758 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 423819 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 423880 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 423941 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 424002 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 424063 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 424124 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 424185 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 424246 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 424307 29 100.0 32 ............................. CCCCGATAGCGACGCTTCTGTAGTCACTGGCA 424368 29 100.0 33 ............................. GTGAGTTCGGTTTTAATTTCGTCGCTAAGCTGC 424430 29 96.6 32 .........................G... CGTCACTTTCTGACATTTTATTCAGTTCGTTA 424491 29 96.6 32 ..........T.................. TCATTTCTGGACGGGGCTGTGTGACGAATACG 424552 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 424613 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA 424674 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 424735 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 424796 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 424857 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 424918 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================= ================== 25 29 98.2 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 441077-442492 **** Predicted by CRISPRDetect 2.4 *** >NZ_OEXS01000002.1 Salmonella enterica isolate STY4, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 441077 29 96.6 32 ............................T CCCACCGCGCTGATTAACGACGGACTGTTACA 441138 29 100.0 32 ............................. TGAGCAACGACAGTAAATAATTTTTCGTGCTG 441199 29 100.0 32 ............................. AACCGCTGGCGGGCTGATTGGTCTGCAACCAC 441260 29 100.0 32 ............................. CAACCAGGCTGGATCGTAACTCCTATCCCCTC 441321 29 100.0 32 ............................. AAAATGCAGGTGGGGTAACGAATGCGAGATTG 441382 29 100.0 32 ............................. CCATTATTCAACCCTCCAGGCTCGCGCCGGCT 441443 29 100.0 33 ............................. CCAGTGGGCGTAGCCAGCTCATCGCTATTTTGC 441505 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 441566 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG 441627 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 441688 29 100.0 32 ............................. CCACGTTCGGCGATGTTGGCCCCATCGGTCCA 441749 29 100.0 33 ............................. AAACGGTAGTGTTTTAAAACCGTTTCGAGGTGC 441811 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 441914 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 441975 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 442036 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 442097 29 100.0 32 ............................. GCACTATTTCGAATGTCTCGACGCCAGATTTA 442158 29 100.0 32 ............................. AACGAATTGAGACTATTAGAGATTATTCGCCT 442219 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 442280 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 442341 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 442402 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 442463 29 96.6 0 A............................ | A [442489] ========== ====== ====== ====== ============================= ========================================================================== ================== 23 29 99.6 34 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.12 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:-0.11, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //