Array 1 183348-184840 **** Predicted by CRISPRDetect 2.4 *** >NZ_NJSB01000005.1 Escherichia coli strain MOD1-EC3802 MOD1-EC3802_5_length_308576_cov_60.6096, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 183348 29 100.0 32 ............................. GCATTGACGCTTTAAACGACGACGGACGCCAC 183409 29 100.0 32 ............................. AAAACAGCCTTTAGATTAGTACCTGACGACCG 183470 29 100.0 32 ............................. TAAACGCACCTGGCGCGCCACTTTATCAACAA 183531 29 100.0 32 ............................. CGGCTTGTTTAATTGCGTGGAACGTCTCAATT 183592 29 100.0 32 ............................. ACGGCGTGGATTGAGGGACGGGTATTTGGTCC 183653 29 96.6 32 ............................T AGATCGCGCCACGAGGAAACGAATATGAACGG 183714 29 100.0 32 ............................. TGCCGCCAGGCCAGCGACACATCAGACAACTG 183775 29 100.0 32 ............................. GTCTGTGATGGCCTGCTCGTGAGTCCGCGGCG 183836 29 100.0 32 ............................. TTTTGATTTCATTAACGGCGCTCCCCATATTT 183897 29 100.0 32 ............................. TGCGCCGTAGCGTGTCCACCTATTGTAGTAAA 183958 29 100.0 32 ............................. ATACAAACGCGGTGTTTATCAATATGAATTTT 184019 29 100.0 32 ............................. GCACCACGCGTACCCCGATGTTTGTTTTGCCA 184080 29 100.0 32 ............................. ATCCGGCTATATCTTTGAGCATTACAGAAATA 184141 29 100.0 32 ............................. CTATTGCTTTCGTACAGATTTTCAGTGGTGCT 184202 29 100.0 32 ............................. AAAATTCTGTGTTTCGACCATTACTTCGGTAA 184263 29 100.0 32 ............................. ATTCTTGATCACGCTTTTACCGAAGTAATGGT 184324 29 100.0 32 ............................. GGGGTAGAATTATTCTTCGTGAGCGATTTATC 184385 29 100.0 32 ............................. CGGCGTTCCGTGCGGCAATTGGAATCACACCA 184446 29 100.0 32 ............................. CGTTCTGAATCCGATATTCTTCAGCACCTTCA 184507 29 100.0 32 ............................. ATGTAGGGGCAATCGAACGATTCTCTGCCGAC 184568 29 100.0 32 ............................. CCGAGCCCGATTATCGGCATGAGCGATGCGGA 184629 29 100.0 32 ............................. TCGAAGAAGAAAGGGAAATAATGCGAGGAACG 184690 29 100.0 32 ............................. TATTACGCGCCAGCAATGCTGACAGCGGCAAA 184751 29 100.0 32 ............................. CGCGAGAGCCAGCAAAACGCCAGGGCACAAAA 184812 29 93.1 0 .A..........................A | ========== ====== ====== ====== ============================= ================================ ================== 25 29 99.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTATTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTACTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : ACCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACCCCTCATGTTCAAAATAGTTCTCCATGCCAGAGAAGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATGTTGAATTAATATCTATTAATTTTTTCTTTAGGTTAATAGTTTGTTTTTTAAGCTTGTTATTCATTGATTAAGTAATAAATCTGAAAATTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATTACCGTTTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTT # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 200342-201286 **** Predicted by CRISPRDetect 2.4 *** >NZ_NJSB01000005.1 Escherichia coli strain MOD1-EC3802 MOD1-EC3802_5_length_308576_cov_60.6096, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 200342 29 100.0 32 ............................. CGACAAAATTCTCAAAACTCGATCAGGAAAAT 200403 29 100.0 32 ............................. CCACCGTTTTCGCCCACCAGGGCGCACAACCC 200464 29 100.0 32 ............................. GAAAAAGAGAAGGTAGAGAAAGCGGAATCTGG 200525 29 100.0 32 ............................. CAGGTCTATCGGGCGATCAATAAAATCGGTCA 200586 29 100.0 32 ............................. GCGCACCGTTGCGTCGAAAAGGCGCTGGAGAT 200647 29 100.0 32 ............................. TACGCTTACACAACGGGCGAATATTTTAACGG 200708 29 100.0 32 ............................. GAACCCAATAGTGAAATACAGCATCATTTTTT 200769 29 100.0 32 ............................. ACCTGGAGGCGAAAAAGGCGCTTCGACGTAAA 200830 29 100.0 33 ............................. GAGGCCTATATCTCTAACCGCATCGGGCTGCGC 200892 29 100.0 32 ............................. GGGCAAATATAAATTCCAGCGTGCTTCATGAA 200953 29 100.0 32 ............................. GGGCAAATATAAATTCCAGCGTGCTTCATGAA 201014 29 100.0 32 ............................. GGGCAAATATAAATTCCAGCGTGCTTCATGAA 201075 29 100.0 32 ............................. GGGCAAATATAAATTCCAGCGTGCTTCATGAA 201136 29 100.0 32 ............................. GGGCAAATATAAATTCCAGCGTGCTTCATGAA 201197 29 100.0 32 ............................. CTGCGTAGCGACCTTTGCTCTCAATTTCGTTG 201258 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 16 29 100.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTCCTTGCTGCAGGTGAAATTGAACCACCACAACCCGCGCCGGATATGTTACCGCCTGCCATCCCTGAACCTGAAACGCTGGGTGATAGTGGTCACCGGGGGCGCGGCGGATGAGCATGGTCGTGGTTGTTACAGAAAATGTCCCTCCGCGCTTACGTGGACGGCTCGCAATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTTGGTGATACATCAAAACGTATTCGGGAGATGATCTGGCAACAAATTACCCAACTGGCTGGTTGCGGAAATGTGGTGATGGCCTGGGCGACCAATACCGAATCGGGTTTTGAATTTCAGACCTGGGGAGAAAACAGACGTATTCCGGTGGATTTGGATGGGTTACGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAGGTTATGTGTTCTTTAAAAATAAGGAAATGTTTGAATTTAGTTGGTAGATTGTTGATGTGGAATAAATTTGTTTAAAAACAGATATGTATGCTTAGT # Right flank : GGGCGCACTGGATGCGATGATGGATATCACTTGGAGTTCCCCCGCCCCTGCGGTAGAACTCCCAGCTCCCATTTTCCAACCCATCAAGACGCCTTCGCCAACTCTTTCACCAGAGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGCTGTTGATTATCAAACCTGACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCGGTGCCTTTCGGATAGTTTTTATTCAAACCAGGATTGGTCGTCGCGGCTATTCCCTGACTGCGCGCAATTGCCAGTGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAAC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [73.3-40.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //