Array 1 50979-49529 **** Predicted by CRISPRDetect 2.4 *** >NZ_PJDY01000018.1 Bifidobacterium longum strain APC1476 contig0018, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================= ================== 50978 36 100.0 28 .................................... TCTCCCAGTTGCTGCCCCTTGGCGTCGA 50914 36 100.0 28 .................................... CGTATTCATCGTGGCCTCTTCGCGGTTT 50850 36 100.0 28 .................................... CGTACATGATGGGGTCCTTGACCTTGTA 50786 36 100.0 28 .................................... TTGGTGGTGTTGGGCGTCCGGCGCAGAA 50722 36 100.0 28 .................................... AGGTCGAGCGCCTCCTGCCATTCGGCCT 50658 36 100.0 28 .................................... ACAGTATTATTGTCCTGATATTCATGTC 50594 36 100.0 29 .................................... TCGTCGTCCATCTCTGTACCTCGGTTTCT 50529 36 100.0 28 .................................... TCCATGACCGCGTCCATCACCTCATGCC 50465 36 100.0 28 .................................... CGTTCCCCAGTGGGGTGAGTGTGATGCC 50401 36 100.0 29 .................................... ACCGATTGCAACGCGAATATCCCGGGTAT 50336 36 100.0 28 .................................... TCCTGCAACTCCTCCTTGCGGGCCTTCA 50272 36 100.0 28 .................................... GTTGTTCCGGGAACAACTGGGAACAACT 50208 36 100.0 28 .................................... CTTGCCTCCGTTCTGCATCCAGCTGTCG 50144 36 100.0 29 .................................... ACGCGGCGAAGAATCTTGTTATCGCGGCT 50079 36 100.0 29 .................................... GTCGCACGTGGCATGGCATGTTGGCGAAC 50014 36 100.0 29 .................................... TGTTGAGGGGAACCGTATCAAACCTGATT 49949 36 100.0 28 .................................... TGGTTTCCGTGCCGCATTGGTCGCAGTA 49885 36 100.0 29 .................................... TCATGGGACTGTGAGCGTCGGCGGCGTGA 49820 36 100.0 28 .................................... TAGAAGTGCAGATTCCGTTCCTGCAAAC 49756 36 100.0 28 .................................... AGGACGTGCAACGCAAGTATTTCAAGAT 49692 36 100.0 28 .................................... TCGTCGATGTGTTCCAAGAGGTTTGGTG 49628 36 100.0 28 .................................... TATTGTTCGGGTGCGATGGTGATGATCA 49564 36 86.1 0 ..............................TTG.AT | ========== ====== ====== ====== ==================================== ============================= ================== 23 36 99.4 28 CAAGCTTATCAAGAAGGGTGAATGCTAATTCCCAGC # Left flank : GGCGAATGAAAATCGTACACAGGACGCGGGCCATGCCTTCTTACGTCAGACCCGGAATCCGAAAGTGCGCAAAAAATCGGGCGTTATCAGCGTTGTAATCGGTCATAATAGTTTTCAA # Right flank : GCTGGAATGCTTGGGTTGATTTGGCTGATTTAGCTGTGATGGCCGCTGCGGGAATGGCCCTTGCGCGGTTGGCGGCAGAGGTTGCGGCGCGGATTGCGGCACTGATTGTTGTGCCAATTGCGTCTGCGGTGAAAAATATGGCGACGGCTGTGTCTGACTGTTTATCGGCGGATGTTCCGGCTCAGGTTGTGGCTGGAATGGAGAATATTGCGGTTGCGCCATTGTATGCCCCTGCCCCTTCATTGCCATTTCATTGGCGCATGGCGAGGGCTGAAAACCAAGATGATGAATCCTGCATGAGTTATCCGTGATTCCTGTGCGTTGGTACAGCGCGGAAGGTTGAGCAGCCGACATATGCAGGCTTGTCGGTTCACGCGAATATCTTTAAACCTATGACTTCCAATACCCTTCGTATGTCAACCATGTTCCTGCGCACCCTGCGCGAGGACCCCGCTGATGCCGATGTCGATTCAGCCAAGCTGCTGCAGCGCGCCGGCTAT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CAAGCTTATCAAGAAGGGTGAATGCTAATTCCCAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-0.30,-1.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [43.3-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.05 Confidence: HIGH] # Array family : NA // Array 1 1603-92 **** Predicted by CRISPRDetect 2.4 *** >NZ_PJDY01000019.1 Bifidobacterium longum strain APC1476 contig0019, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================= ================== 1602 36 100.0 28 .................................... CGGCGGGACTGCTGGCGTCGCTGTCCGG 1538 36 100.0 28 .................................... GCGATGTATTGGCGTGGCATCGTTGAGG 1474 36 100.0 28 .................................... CCCGCCACCTCACACGGCTGCTGCCGGA 1410 36 100.0 28 .................................... TCATCCGTCAATAGTGTTGCGCCATCCG 1346 36 100.0 28 .................................... CGAAATCGCGAAACTGGTCGTTGGCGTC 1282 36 100.0 28 .................................... ATTGGTGGCTGACCAAGCGCTACTACAA 1218 36 100.0 28 .................................... ATGTGCTGCGCCTTTCGTTCGGGCCGCG 1154 36 100.0 28 .................................... GCACTCAGAATTACCACACATCCGATGG 1090 36 100.0 28 .................................... TTGGGTGCGCGTGGATGCGTGCGTGGCA 1026 36 100.0 29 .................................... GAACCTGTTGGCCTGGTCCCAGTCGGCCG 961 36 100.0 28 .................................... TATATGCACCATTTCACTTTACGTAGAG 897 36 100.0 29 .................................... CCGAATTGGGTGGTGGATGATGACCGGTT 832 36 100.0 28 .................................... AACCTTTACAACAATATGTTTACCTGTT 768 36 100.0 28 .................................... TCGTGTAGTTGTCCATCACGTCGGTGGA 704 36 100.0 28 .................................... GCCCGAAAACTCATTATAGGATGCAACC 640 36 100.0 28 .................................... CCAACGCTCCTTCATATTACCGCTACGA 576 36 100.0 28 .................................... AACCGCAACGCCTACCCCGCATACGAAA 512 36 100.0 28 .................................... ATACCGGTGGCCGGCAGCGTGTCGCGGG 448 36 100.0 28 .................................... GAGGCCCGCGACCTGATTTCCAGCGGCG 384 36 100.0 28 .................................... GCCTCATGATGAAGAGTCGCAAATCATC 320 36 100.0 29 .................................... GTGAGCTTGTCCGTGTCTTTCATCAGTGG 255 36 100.0 28 .................................... TGTTTACGCTCAAAAAGCACATTAGATT 191 36 100.0 28 .................................... CCGAGGCCGGTAGGGTTGCGTGTCTGGT 127 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================= ================== 24 36 100.0 28 CAAGCTTATCAAGAAGGGTGAATGCTAATTCCCAGC # Left flank : ATTCAACGGTTCCGGTTTGACTATACCGAGCTCATTGAATGATTTTGCGCAGCAATTTGGTTTATATTGCGAAGGCAAAATCGACAGGTTGCAGGTTCCCGAATATGTAGGCGAGTCATGAAACGCGATGAGGACAGTGGCGGCATGTGGTGCTTGGTGATGTTTGATTTGCCGGTCAAGACAAAACGGCAACGGCATGCTGCAACTGTCTTTAGAAATATGTTGCTCGACATGGGATATGGAATGGTGCAGTATTCCGTATATGTGCGGTATACGCCTACGCAATCGGGTAATAGGGCGACGGTCAAAATGATTAAAGACAATCTGCCAGCTAATGGCTTAGTTAGAATTTTGCATATTAGCGATCATCAGTGGTCCACGGCGGCCCGATTTTCTTCTGGAAAACGTGAGATTGAGGAAGAAACGCCTGACTTTCTCACGCTTTTTTGAACGTAGGAGAGTCTGAAAAGATTGAAAAATAGCCCTTCTTGATAGGCTAT # Right flank : CGTTGTGGTAGTGCCCGAAAAGTTGCGCACTTTGGATCGTGGCCGTCCATGGCGCGATAGTCAGTTCGCTTCCACGAGGTTGTCACCGAGCC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CAAGCTTATCAAGAAGGGTGAATGCTAATTCCCAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-0.30,-1.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [43.3-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.64 Confidence: HIGH] # Array family : NA // Array 1 18284-18628 **** Predicted by CRISPRDetect 2.4 *** >NZ_PJDY01000023.1 Bifidobacterium longum strain APC1476 contig0023, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =========================== ====================================================== ================== 18284 27 66.7 39 G..C....C.....C...GCC....GA ACCGCCACGGCGGTCATCACGATCGCCACGGTCATCGCG 18350 27 96.3 54 ........................A.. ATCGTCACGGGAGTCGCGAGCATCACGGTCATCGCGATCGTCGAAGTCACGGTC AGA [18356] 18434 27 81.5 33 GG.A..A.................A.. ATCATCGCGATCATCGCGATCGAAGTCACGGTC 18494 27 100.0 21 ........................... GTCGTAATCATCCTCGAAGTC Deletion [18542] 18542 27 100.0 30 ........................... GTCACGATCGTCGAAGTCACGGTCATCGCG 18599 27 85.2 0 ..............C.....C....CG | GC,C [18617,18621] ========== ====== ====== ====== =========================== ====================================================== ================== 6 27 88.3 36 ATCGGAGCGACGGCGACGCGGACGGTC # Left flank : CATACGGCATAAAGGCCGGGCTCTCACAAGGGCCCGGCCTTTGTTGTTGCCACAGTGATCAACGCCCATGAGTACCTTCGATGATCATCCGCCATTCTTGATGCATGGGAATAGTTGTCAACCGACAACTAAACGTACATGGCGGCAGCACGAGTGCCTTATTCAACATCGAAATATGCAGCGCGAAGAAGCCGAAAAACCAAAAAGGCTTCTATACCGAATGAAACGGTATAGAAGCCTTTTGGTTTGCGATCAAGCCCTTCTCACCCGAGAGAAGCTAGAGAACGATCAGTCCTCGAATGCCGAACCGTTAAGCGGGAAGCCCTACGGGCTTCCCGTAGGTGAGGGGAGCGGCTATGCCGCGACCGATCCGTGAGAGGGATTTAGTCCTCGAACGGATCAAAGTCGCGACGGACGCGGCGACGCGGGCGCTCAGTACGCTCTTCGCGGTCGGCGCGGTAGTCGTCGTAGTTGTCGTCGGTGGCGTAGCGCGGGTTACG # Right flank : GATCGTCACGGTCACCACGGCCACGGCCGCCACGGCGGTCATCGCGATCGCCACGGCTCGGGCGGGCGTTGTTCTCCTGATCCTCGAAACCAGGAATGGCCAGGGAGATCTTGCCGCGATCATCGACACCCTGAACGATCACCTCAACGGTGTCGCCTTCCTTGAGCACGTCTTCGACAGCGTCAATACGCTCGCCGTTGGCCAGGTTGCGGATCTGGGAGATGTGCAGCAGGCCGTCAGTGCCGGGGGTGAGGTTCACGAAAGCGCCGAACGACGTGGTCTTGACGACCTTGCCGTTGTAGGTTTCGCCGGCCTCGGGCACGTGCGGGTTGGCGATGGAATCGATGATGGACTTGGCCTTCTTAGCGGCCTCGCCACCCTCGGAGGAGATGAAGACGGTACCGTCATCCTCGATGGCAATTTCAGCGCCGGTATCTTCCTGAATCTGGTTGATCATCTTGCCCTTCGGGCCGATGACCTCGCCGATCTTCTCGACCGGA # Questionable array : NO Score: 4.79 # Score Detail : 1:0, 2:3, 3:0, 4:0.45, 5:0, 6:0.25, 7:-0.43, 8:0.6, 9:0.92, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATCGGAGCGACGGCGACGCGGACGGTC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,0] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGGAACGACGGCGACGCGGACGATC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.40,-0.30] Score: 0/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [31.7-31.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.41 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 2221-1275 **** Predicted by CRISPRDetect 2.4 *** >NZ_PJDY01000036.1 Bifidobacterium longum strain APC1476 contig0036, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 2220 28 100.0 33 ............................ CGTTTCGGATTGCTTCGCCGATAGTGATAAACG 2159 28 100.0 33 ............................ AAGGGCAATGACACCAAGACCGATGACCGGCAG 2098 28 100.0 34 ............................ ATTGGAGGCCTTGCGGTGATATGGTTCCGGCGTA 2036 28 100.0 33 ............................ CTTTCACCAAACAGCATACAGGCATACCTGTAT 1975 28 100.0 34 ............................ GTATTATCTCAAGGACCATGATCGCACATGGGGC 1913 28 100.0 33 ............................ GTAAGAGAGGCCAGAAGCCCCGTTCATGCTCCA 1852 28 100.0 33 ............................ CCACCGCCCCGCAAATCGGAATCCCATGACCTA 1791 28 100.0 33 ............................ TAAATGTCAAACCTATAGCTATTTCAAGTTTTG 1730 28 100.0 33 ............................ GCCGTCCGGCGAGGCCAAGTTGGTTGATGGTCA 1669 28 100.0 33 ............................ TAACCTGCTGCTTATCGTCAGAGGTCTGATAAT 1608 28 100.0 34 ............................ CTCACTGGCCGCGTGCTGCTCTCCCCCCTACGCC 1546 28 100.0 33 ............................ TAGGGACTTTGGTGCACGGCACGGCACAGTTCC 1485 28 100.0 33 ............................ GCCGACTCGCTGCGTCTGGTCGCTCTGGATGCA 1424 28 100.0 33 ............................ GGTGAGTGTCTTCGTCCGGCAGCGTCCCTCCGC 1363 28 100.0 33 ............................ TGGCACGTGCAAGTACTTGACTTGGTTGGTCTC 1302 28 96.4 0 ..............T............. | ========== ====== ====== ====== ============================ ================================== ================== 16 28 99.8 33 ATCTACCCCGCACACGCGGGGATAAACC # Left flank : CGAATGCGCGACATGATGCAGGACGGCAGACTGCTGGAACGTTGCGTACATGATGTTTCCACTCTCCTCTCGGAGGAGCCCGATAACGAGGACAATTGTTCCGTCTGGACTGGCGGGCAACGATACGGGAAAGCCGGTCAATCGTGGGCACCGTCGTGATACGACTCGAAAGCGCTCCACAAGGACTGCGCGGACACCTATCCCTATGGATGGTGGAAATCAGCAGCGGCGTATACGTCGGAGACCTCAACACCCGGATACGTACGCGACTCTGGCAACGAGTCCTCTCGGAACTCGGTACGGGCAGAGCGACGATGGCATGGCATTCCCAGCATCAGCTACATGTCAGCAGCCAAAACGGAAAGAAGACGATAACCGCTTTCGACGGAACCATCCTAATGTCCAGACCGCCTAAAGCCAAAGACAATACGGCCTGAAAACAGGTACGCAATTTGCATAAACAGCCCTCGCATGGCATTGAAAACGTTGAAAACTAAACT # Right flank : CTTGGAAGCGGGTGCTTAAAATATTTTCCCATTTGCCTGTTATACTGAATACGTTCACATAGAAATGAAAGAGGAAAAACAATGAGCCCTTCGGAAGCCAGTGCCACGAAAATCCCTGCCACCTCCATAGACCGGCACTAATTGGAGTGGGGGCAAAAATGAATCATCCAGACCAACTCAGCCGTGAATATGCGGCGATCCTTCCCGCCTTGAAAGACCACGGCTATCGAGCCGACGTGAAAGCAAGCATCGCCGACGAACGTTTCATCTTGGTCGTCAGCGGCAAACCCACCACAAGAATCTACCGGGACGGAGGATGGGTTCGCGACGATGGTGCGAGAGGATCCGCTCCAGCCGACCTACTCAGCTTCTACAAGCATGAGCATTACACGGAAGCCCTGAAACATTGGACGAACAAGGATTGGCGTGGAATCGCCCGTGACCTGCTAATCGACAACGGTGTCCGCATGGGATCGGTCCTGTCCGCCGTTTTCGAGGGT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATCTACCCCGCACACGCGGGGATAAACC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,8] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [61.7-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.15 Confidence: HIGH] # Array family : NA // Array 2 6457-5938 **** Predicted by CRISPRDetect 2.4 *** >NZ_PJDY01000036.1 Bifidobacterium longum strain APC1476 contig0036, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 6456 29 96.6 32 ............................C GGCAGGCAGCTGTCGCATAAGCCCAGCAAGGA 6395 29 100.0 32 ............................. CAAACAGGCTCTCGGATACTGAGAGCTGAGAC 6334 29 100.0 32 ............................. GGCGTCGTGTTATGGCTATGCACGTTTGTGCT 6273 29 96.6 32 ............................C ATTGGCGATGGGGTTGTTCGCGGCTTGGCGAA CC [6267] 6210 29 89.7 32 ............CA..............G AAAGCGCCATTCGAGGATCTCGATGTCCATAA 6149 29 86.2 32 .T..........CA..............G AACGAAAGTCCTGAACATCTCGCAGATTTTGC 6088 29 82.8 32 .T......T...CA..............G CGTCGGCCGAGCTCAATCTGGGTGATGCCTTC 6027 29 89.7 32 .T..........CA............... TGGAACGCGCCGTTGCCTGTACTGCAGGCCGA 5966 29 82.8 0 .T.....T..T.CA............... | ========== ====== ====== ====== ============================= ================================ ================== 9 29 91.6 32 ACCTACCCCGCAGGCGCGGGGATAAACCT # Left flank : TCGGATCCGAAAGCATCCAAATGGTCGTTGAACGGCATGGACTACCGCGGGTACGCGAAACCCACGCGCATGGAACAAGCCTCATGGTACGCATTCGGCCTATACGCCTACCACCAGCAAGGCAACCAATACAAACCCATGTACAAGGAAGGCGAACGCTTCAACAAAGCATTACGGATATTGGCGGATACCGGCGAAGACGTTGACGAACTTTACCGGAAACTGTTGAACACCCACAATATGCAGGAAGCCGCACCATTCTGTCTGAGAATAATCCGACTGTTGAACGAGCACGACATTCCACTGGACCACGCCCTGCTGGCATTGGACTTGGCCAGACTCAACAAACCGGACTCCGCAGACATGGTACGACGCGACTGGAGCCGACTGCTCGACTGATTGTCCACCAGATTGCCAGCACTGGACAATCGGCTCAGAAAATAGGAACAAATTTGCATAATAGACCCATGCATGGTCTCGAAAACGTTGAAAACTAAACT # Right flank : GTGAACCACTTTTATTGACATCTGACTTTTATCTGTTATACTGAATATGTCCACATAAAACAGAAAGAGGAACCAATGACCAACATCATCGAAAAACCCAAGACCAACACACTCATCGAAGAATACCGCCAACAGGCACTGGCATACGGGCACGAAAAAGCAATCCGCACCTTCGCCACCCCCATGCTCCAAGCATGGGAGAAAGCCTGCGAAGGATACGCCGACGAAGACACGGAACTCGAAGGGTTCGCGGACCTCATGTCCGAAGTATTCAACGTCAGGGATGCGGCAATCGCCGCCGCCATCAACCCACGATTCAAGATCGGGACCATCATCAACCTCGCGGCGAAAGCCCACACGCCATACTATAAGAGGCTTCTTTCCAAAACACTTGCCGACGGGTTCACCAACCCCGACATCAAACCCGACCACAACCGGCTACACAATGCCATCACAACCGCATGCGGTCTCACCGACCTTGCCTCGGAGAAGAAGTACCG # Questionable array : NO Score: 5.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.58, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.41, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ACCTACCCCGCAGGCGCGGGGATAAACCT # Alternate repeat : CTACCCCGCAGGCGCGGGGATAAACC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCACACGCGGGGATGAACCG with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-5.70,-6.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [3-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,5.24 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //