Array 1 11727-10353 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACWPU010000049.1 Ralstonia pseudosolanacearum strain PD:1255 IPO1655-2017_49, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 11726 29 100.0 32 ............................. TGGCTCCACCAGCATCTACCCATACCTCAGTA 11665 29 100.0 32 ............................. TACGCTGTGCCCCGCGCCGGTCTTGCATGAAG 11604 29 100.0 32 ............................. CCGCTCAGGATGGATTGCCATTTTCTGTTAAC 11543 29 100.0 32 ............................. ATTTCAACATCGGTATGGAGGCAGCGATTCAG 11482 29 100.0 32 ............................. CCATCACCCGCGCCAGCGCCGCGACGGTGGCC 11421 29 100.0 32 ............................. ATCAGTGGTGGATTCCGTGGGGAGTGGCTGGA 11360 29 100.0 32 ............................. CCGAACCTGCAGTCCATGCGCCCGCTGGGTCA 11299 29 100.0 32 ............................. GCGTCAACGTCCCAGCCAGGCGGTACATGATG 11238 29 100.0 32 ............................. GCGCCGCCCGCAGGACCGTCGCGGGCGGACGG 11177 29 100.0 32 ............................. TTTCGCGTGTCCGGCCGGGGATTTCTTGTCGT 11116 29 96.6 32 ............................T ACAATGGGCTCGTATAGAACGTTTGACTCCCT 11055 29 100.0 33 ............................. CACGTCAGACGGAATGCGGTGCCACAACCTGGG 10993 29 100.0 32 ............................. ATTTCTGCACCTCACGAACGCAGACCAGATCA 10932 29 100.0 32 ............................. GCCACCCGCAGCGCTTCCTCTGGGTCGTCCCA 10871 29 100.0 32 ............................. TCGCTGGTGCAGGCGCCCCCGATGATGGTCGC 10810 29 96.6 32 ......T...................... GTGTTCGCTACCACGCTAATTGCCCGAGGCGT 10749 29 100.0 32 ............................. TCATCCCGGCCGGTAGCACTATCCGTGTAGAG 10688 29 100.0 32 ............................. CGCGGCAGCTCCACGAGGATGCGCGGATGGTC 10627 29 100.0 32 ............................. CAAACGAGTCTCGATAAGGTCCCTGTGCTCGA 10566 29 100.0 32 ............................. ACCCGCAAGACGCTCACGGCGGACCAGAAAAG 10505 29 96.6 33 .................A........... GGGGATGCGCGGCGTCTGTTTGTGCGGTTGGCC 10443 29 86.2 32 A.......T.........A..G....... GCTTAGTCGCTGAAGCTTGTCCAGATGATCGT 10382 29 86.2 0 ............C..........ACC... | T [10367] ========== ====== ====== ====== ============================= ================================= ================== 23 29 98.4 32 GTGTTCCCCGCGTATGCGGGGATGAACCG # Left flank : TCGCATCATCCCCGCCATCGAGGAGGTGCTCGCAGCGGGCGGCATCTCGCCTCCGGAGGCCCCCCCGGAATCCGTGCCTCCCGCCATTCCCAATGCCGAGCAGCTCGGCGATGCCGGCCACAGGGTGCAGGGATGAGCTTTGTCGTGGTGGTCACCGAAGATGTCCCCCCGCGCTTGCGCGGACGGCTCGCCATCTGGCTGCTGGAGGTGCGGGCCGGCGTGTACATCGGCGACGTCTCGCGGCGCACGCGCGAAATGCTCTGGGAGCAACTGGTCGAAGGGCGTGAAGACGGCAACGTCGTCATGGCCTGGGCCAGCCCGCACGAATCGGGCTATGAATTCCAGACACTGGGCGCCAACCGCCGGCTTCCAGTCGAATTCGACGGGCTGCAGCTCGTAGCCTTTCAGCCGGCGGACAAACCTGTTCTTTGACAACGCGAACGATCGGTACCTTTTCGGTGGTGGAATTTTCGCTTCCTAATCAATAGGTTGGGTTAAGT # Right flank : CCGACTCCGCCGCAGGACAGGATCAGCCCGCCAGCCCAGCCCGCGCCGCAACAATCGCCAGCCTCACCTGCTCCGGCGCCGTCCCGCCGATATGGTTGCGCGAAGCAACCGAGCCTTCCAACGTCAGCACGGCGTGCACGTCGTCGCCGATCAGGTTCGCCTTGTCGCCCAGGCCGCTGATCTCGCGCAGCTGCGCCACCGACAGGTCGGCCAGGTCGCAGCGCAGGTCGTCGCAGGCGCGCACGGCGTGGGCCACGGCTTCGTGCGCGTCGCGGAAGGGCAGGCCGCGCTTGACCAGGTAGTCGGCCAGGTCGGTGGCGGTGGCGTAGCCCTGCAGGGCGGCGGCGCGCATGGCGTCGGCCTTGACCGTGATGCCGGGCACCATATCGGCGAAGATGCGCAGCGTGTCGACCACCGTGTCGACCGTGTCGAACAGCGGTTCCTTGTCTTCCTGGTTGTCCTTGTTGTAGGCCAGCGGCTGGCCCTTCATCAGCGTAAGC # Questionable array : NO Score: 6.18 # Score Detail : 1:0, 2:3, 3:0, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGTATGCGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGTATGCGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [11-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [26.7-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 22344-21092 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACWPU010000049.1 Ralstonia pseudosolanacearum strain PD:1255 IPO1655-2017_49, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 22343 29 100.0 32 ............................. ATTTGTGAGCGCCTCGCAGATGGGATGAGTCT 22282 29 100.0 32 ............................. CCTATGTTGCAGGATCAACCGGAGCAATGTCT 22221 29 96.6 32 ............................A GCCGAGACCCTGGCAGGCGGGCTCGAAACGCG 22160 29 100.0 32 ............................. AGGATGTCGATGATGACGGCTGGGCTTGGTTT 22099 29 100.0 32 ............................. TGCATAATAAACAATGTACTTAATACCTAACA 22038 29 100.0 32 ............................. TGACCGCAACGTACGGCGTCGCTTCTGGGCAG 21977 29 100.0 32 ............................. CGCGCAGATCGCGTTCTGCGCTTCGGCTTGCC 21916 29 100.0 32 ............................. CTGCCGCCCGGGTCGGACGTGACCCGCTTGTA 21855 29 100.0 32 ............................. TGCGTTGATCCGATCCTCGCTGCCTTCGGTCG 21794 29 100.0 32 ............................. CGGTCGGATCCATACCACTTTCTGACATGAGC 21733 29 100.0 32 ............................. GGATTACATGCCCACAATTGACCAATTATCGG 21672 29 100.0 32 ............................. CATGTAGAAGCAATTATCAAATTGCGGAACAC 21611 29 100.0 32 ............................. CCGGGTCAGTCACGGCTAAGAGAGAGACAGGG 21550 29 100.0 32 ............................. CCGAGGGCATGCGTCAATACCTGAACAGCCAA 21489 29 100.0 32 ............................. ATTCCCCATCCCTTTTTTTCGACTACTTGCGC 21428 29 100.0 32 ............................. CATCAATCAGACGCGAGCACAGGATTTCCGCT 21367 29 100.0 32 ............................. TCGCAGAACACCCCGCCTCCACGCACCGAGAC 21306 29 100.0 32 ............................. ATGCAGGGCGGCGCGTTTTTCCGCCAGCTGTT 21245 29 100.0 32 ............................. TTGACCAGGGTGTTGGCCAAGCGCTTGGCCAT 21184 29 100.0 32 ............................. GGATGATGTCCAGGAGGTATTTGATTCGATTA 21123 29 86.2 0 ............CA..........T...A | TC,A [21095,21099] ========== ====== ====== ====== ============================= ================================ ================== 21 29 99.2 32 GTGTTCCCCGCGTGTGCGGGGATGAACCG # Left flank : CGTGCGGCAGTATCCGCAATACGAGCGCATCGGCCTGCGCGAGCTGTGCGACGCCATCCACAGCGTCTACAAGGCCAACGACGTGGCCCGCGTGACCACCGAGATGTACCTCTCCAACATGGAGCCGGCGATGAAGCCGTCGGACGCATGGGCCAAGATGGCGCACCGCGAGACCGAGCGCGTGGCCATCGACGACCTGGAGGGCCGCATCACCGCCATCCTGCTGACGCCGTATCCGCCGGGCATTCCGCTGCTGATCCCGGGCGAGCGCTTCAACCGGACCATCGTGCAGTACCTGCAGTTCGCGCGCGAGTTCAACAAGCTGTTCCCCGGCTTTGAGACCGATATCCACGGGCTGGTGGAGGAGGAGATTGAGGGTCGGGTTGGGTACTTTGTTGATTGCGTGCGGTAGGGCGTTGTCGCGAGCTTTTGTCCGGTGGTAGATCGGTAGATTTTTTGGGGCCGGATTTTTGCTTTTGGATCAGGGGTTTGCGGTAAGT # Right flank : ACCAGCCCCAGTTCGTGCGCTGCCTGCAGGGACCAAAGAAAGTCCGCAGATTAATCCCTTTCTAATCCATCAATTGGATAGTCTTTATATCTACTGAAGTCACCCAAGAAAATCAAAATAAATACCCGCAAGACTGCTACGATCCCCTGCTCGGGAGCAGGCACAGATTGTCAATTCATTGGCATCAAGAACATGCATCAGGCTGACATGGGGAAAGGGGGGGTGCGATACTTTGCGTATTGGGGCAAGGCACGCATGCAGGAAGGTGCCGGCCAGCGATATCACCTGCTTGCCTTTCATGCACTGGATGTCGCGGCCTGCGGGGTGGAGTTGCTGCGACTGCCCCGGTTTACTCTTGCGCCGCTGGCTACGGAACTTGGCTGGCCATTGCAGGCCGTCAACAAAATATTCGCGTGGTTCCTCGCGCTGCACGATCTTGGCAAGTTTGCGCGCGCTTTTCAAAATCTGGCGCCAGGGTTATCTCCCGATCTCGTCTCTCA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGTGTGCGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGTGTGCGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [48.3-55.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.78,4.87 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //