Array 1 1138990-1136680 **** Predicted by CRISPRDetect 2.4 *** >NZ_RHPA01000002.1 Vibrio cholerae strain O75TS O75TS_SAN5445A2.027326.utg2.tr.ro581642, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 1138989 28 100.0 32 ............................ ATCAATGAACCCGAACGGCGTTCAGTATGGTG 1138929 28 100.0 32 ............................ GTCCACAACTTCATCGTTCGCTAAGTTGACGA 1138869 28 100.0 33 ............................ TCCATAACCAGCCTTTTGACGTTGTTTTTTGTT 1138808 28 100.0 32 ............................ TTCCGGCTGTAAACTCTGCACTAAAAATTGAT 1138748 28 100.0 32 ............................ ATAACGCGGTTACGCTCTGCGACTAGCCTTAA 1138688 28 100.0 32 ............................ GCTTATTAGCATGTCATTTATTACTCTATGCT 1138628 28 100.0 32 ............................ ATAGCTCTAGCATATTTCACTAGCTTTGAGCG 1138568 28 100.0 32 ............................ ATTCGGACTGAGTTTTATAAAACCAACCGTCA 1138508 28 100.0 32 ............................ ATTTGGCACCGGGGAAAGTGAACTCAGCTACG 1138448 28 100.0 32 ............................ CGCTTGCGAAACAGCCACAACGGCTCACCGTT 1138388 28 100.0 32 ............................ TTCTTGCTGCATCATCATAATGACCTGAGCGC 1138328 28 100.0 32 ............................ CTCACGGGGCGCAGCAACCTGTAACGATTGAT 1138268 28 100.0 32 ............................ ATTTCGCTGCTTGATTTTGCCTTTTGCTCAGC 1138208 28 100.0 32 ............................ ATTTATAATGTCGCGTGATTTCCGGCTCATCA 1138148 28 100.0 32 ............................ TCAAAGACATCTTTTTCAACAGGTGCGTTGAC 1138088 28 100.0 32 ............................ AATATTCTGTGTTGGTGGAATACCTAGCATTT 1138028 28 100.0 32 ............................ AGTTTAAATTAACTTGCGCACTGGCTACATCA 1137968 28 100.0 32 ............................ TTATTAAAACGCTCTGCAAGCGCTCTGAGCTT 1137908 28 100.0 32 ............................ ATTGGCGTTAAATAGTGGGTTCATTATTTTTC 1137848 28 100.0 32 ............................ TGTAGACGCATGTTCAGTTTAACGCGGTATGG 1137788 28 100.0 32 ............................ TTTTTCCCACCCCATTTGCTCGAAAGTTCTTA 1137728 28 100.0 32 ............................ TATGCGCTTCTCTGTTCGTTTTAATAGTCTTT 1137668 28 100.0 32 ............................ AGAACGAACGCGACTCGCTCTAGTATTATTTG 1137608 28 100.0 32 ............................ TATTTGCGCTTGCGTCATTCCAAGCAATCTAA 1137548 28 100.0 32 ............................ ATGCCGATTTCATCAGCAGCAATTTTGCCTGT 1137488 28 96.4 32 ..............T............. TTGCTTCTCAAGCGCGGTAATTTGCTCATAAA 1137428 28 100.0 32 ............................ CCGAAGGCTTGCATGAACAAACCCATGTTCTC 1137368 28 100.0 32 ............................ GTTTGCTAAGTTGATTTTGTAATCATTCTTCA 1137308 28 100.0 32 ............................ CAATCACTTTCAATTACCACACATTCGAGTTT 1137248 28 100.0 32 ............................ AATCACTGGCCATTGCATTGCTGAGTGCGATT 1137188 28 100.0 32 ............................ ATAATCAAGCAAAACATTTTGCAATTTTGCGT 1137128 28 100.0 32 ............................ AATAAAAAATCCGCGTCCGAAATGTCGATATC 1137068 28 100.0 32 ............................ CGTTAGGGCATTTACCGTTATACTTCTGACTT 1137008 28 100.0 32 ............................ TCATCAAACACTCGCGTGCTATCGACAATCGG 1136948 28 100.0 32 ............................ ACTTACCGCAGCGCCCAAACGACCACCAATAC 1136888 28 100.0 32 ............................ TTGAGCGATAAGCTCTGGTGTTTTGTTTTTTA 1136828 28 100.0 32 ............................ AATACCTGCATTTTGTTCATGTCTAATTTGTA 1136768 28 100.0 32 ............................ TACAGAGAAAAGAATCCCCAACGGACAAGGGT 1136708 28 92.9 0 ......................G.A... | T [1136688] ========== ====== ====== ====== ============================ ================================= ================== 39 28 99.7 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : AAGCTTATTGAATGATCTACAAGGTTTATGCTGGTTAGGGCCTCTCAGCGGTTATTGCCAAATCAGTGAAGTGTTAAGCGTTCCTGAGCAAGTTCAATACCGGGTGATCTCAGCTAAGCGCCGTAATTTAAGTGCTGCGAAGCTGCGCCGTTTAATTGCACGAGGGAGTATAAATAAAGAAGGTGAGCAGCGCTATAAAAAGAAGATGCTGAGCCAGAGTATTAAAGGTCCATATCTTGACTTACTCAGTAGCTCGACAGGACAAAAATATCGTAAATTCTTTGAATTTGGTGAAATTCAGGACGTGCCTGTACTTGGAAATTTTGATACCTATGGACTAAGTCTTAAGGCAACAGTACCTTGGTTTTAACCCTATTTTTTCGCTCTTTAAAAATATGCCTAAAATACAATGAGTTACAATAGGTGTTTTTTAACAAGGTAAAAATACAATTTTTACCCTAACTGACTGTTGTAACTTACTTTTATAGATTTATTCTATA # Right flank : TCTTTATATATCTTATTTTTGCAGATCTCAAAAGTTGGGATTATATAAATGACAGTTTGCTTTGAGATTTCCCGCTTACTGGCTGTATATCCGAAATTGTGGTAGCGTTTCCCACACTAACACCAGTCTATTAATTAAGCCGCTGCCCTTCGGGGTGGCGGTTTTTTTATGCCTGAAATTTGGAGCCGCACATGCAAGACAAGAAGTTATTGGGCGATGAACTCTCACTAAAATCGACCATTAATGCCTCTACGGATATGAGTCAGTCTGCCTTTTTACCGAAAGGCTTTCAGTTTGAAGCCCCTAAAGCGCCGCAACGTAACTACGATGTGACGTTAGGAGATACCGCTAAAGCCGTCGGTAGTGGCGCTCTGCGTTCACTGGCTGGCCTTGGTGAACTCTCGGAGAACTTCCTTGGTGTGGGTGAGGGCTTTCGAGATTTGATGTCCTCTGGCTCGGATTCTCTGCAAGAGAGTATGACTCAAGATGGCCGCGAAGCT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [73.3-78.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 1119587-1123695 **** Predicted by CRISPRDetect 2.4 *** >NZ_RHPA01000001.1 Vibrio cholerae strain O75TS O75TS_SAN5445A2.027326.utg0.tr.ro1m, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 1119587 28 100.0 32 ............................ TGTCGATCTCGGTTGGGCGTCTGCCAACTGGT 1119647 28 100.0 32 ............................ TTTACAAGCTGTATCTGAAAGGCGATCTACCA 1119707 28 100.0 32 ............................ TTTTTTCTTATTCCCAAATGTCTGCCGGAACT 1119767 28 100.0 32 ............................ AGATTGCGAGATTACAAGACGAACGGCGAGCG 1119827 28 100.0 32 ............................ TCAAGCGTTTTCTGTATGTTTTCAAGTTGCTT 1119887 28 100.0 32 ............................ ACTAGACCCATCGTTACCCCAATTACGCTTTG 1119947 28 100.0 32 ............................ TATCGCTGAGTCGTTGAAATTTCCGACCGTCG 1120007 28 100.0 32 ............................ TTACATTATTTTATTAACCAATCGTATAATAG 1120067 28 100.0 32 ............................ GCTTGAATCGTCACCCCACGCTTGCTGCAATC 1120127 28 100.0 32 ............................ TGTTAAATGAACGTACAAGAATACCGAGACGA 1120187 28 100.0 32 ............................ TGACGAGTACCGTCCTTACGTGCGTCCAGGTG 1120247 28 100.0 32 ............................ TATATTCACCATCGTATTCTTCATATTCGCAA 1120307 28 100.0 32 ............................ TATCTCAAAGAAGAAGGTGGAAGAGGTCTTTT 1120367 28 100.0 33 ............................ GTTGTAGTCATTAGCTTTTTCATAGCCTTCTTT 1120428 28 100.0 32 ............................ TTGATCTGATTTAGCGCGTACTTTAAAGGCTC 1120488 28 100.0 32 ............................ AAACGGCACGATTCAAAAATTCCAGCTTAACC 1120548 28 100.0 32 ............................ AATGAATGTAAGCTTGTAAGTGTGGATGTTTA 1120608 28 100.0 32 ............................ AGAATCGCCATAAGATTTAAGCTGCAAGAAAC 1120668 28 100.0 32 ............................ AGACGGGTCTACTCATCCAGCGCCTGAAATTC 1120728 28 100.0 32 ............................ AAATAACTAAACTTACGCGCCACTTCAAAATC 1120788 28 100.0 32 ............................ TCACATTATATGTAGTAGCGGTTATGTATCTG 1120848 28 100.0 32 ............................ TGAGATCAGGCAGTTGGCCAAGCTTCCAATTC 1120908 28 100.0 32 ............................ TTTTATCGCACATCACTAAACAACAAGGGCGG 1120968 28 100.0 32 ............................ TTCAAATAACGCTGTGAAATGACTGGTTTTTG 1121028 28 100.0 32 ............................ TAACTCAAGAAGTCCAGCAGCCGCTTGTTGTG 1121088 28 100.0 32 ............................ TGACTGGATTTATAAGCTAGGAATATCAAGGG 1121148 28 100.0 32 ............................ TGAGACAAGATGATGATCACTCACTGTCACCT 1121208 28 100.0 32 ............................ TGAGCTTTTGCACCTCATCCGGTGCGCTTGTC 1121268 28 100.0 32 ............................ TCTGTTCGCTTTTCCATCGCCTCCAGATCTGC 1121328 28 100.0 32 ............................ TGACTATTTTTCTCCCCGAACTAAGCGAGAGT 1121388 28 100.0 32 ............................ GTTACCGCCCCATTTGGCTGGTATTTTGGGGG 1121448 28 100.0 32 ............................ TTAAAAGTCCAAGCATCTAAGATACATGGACT 1121508 28 100.0 32 ............................ GTACTCAAGGGTTAATCGGTTAACGTAGTTAA 1121568 28 100.0 32 ............................ TGTTTAGCTGTTGGTTTGTCTGCTAAAGCGAA 1121628 28 100.0 32 ............................ AAAGATTCCAGATCTGGAAGCGTATGTGTCAG 1121688 28 100.0 32 ............................ ACCAACAACAACAAAGTAATGCCATTGCTGTT 1121748 28 100.0 32 ............................ ATGCCTGCTGGGAAGCGATGCCCCACAAAAAT 1121808 28 100.0 32 ............................ TAGAGAAATGTTTCAGCCGCACAGATCGCCTT 1121868 28 100.0 32 ............................ AGCCGCTTTAACGGTTTGGCTTATGTTTTGTG 1121928 28 100.0 32 ............................ ATTACGAACTGGCTTGCCATCAATTGAATCGA 1121988 28 100.0 32 ............................ TTCAACAGTTACCTGACCAGCAAACAAAGCTT 1122048 28 100.0 32 ............................ TCTTTTAGTCTGATCACTTTCATTTTATCCAC 1122108 28 100.0 32 ............................ TTGAAATTGAAGCGTGCAGCATAAGTAATGCT 1122168 28 100.0 32 ............................ CATACACTGCAAAACAAATACTAGAGCTTCAC 1122228 28 100.0 32 ............................ TGAAAATTCAAAGTCTTTAGGAAGCCTAACCG 1122288 28 100.0 32 ............................ TACAAAGCGAGGAGTTTTACGCTCCAGCTCAC 1122348 28 100.0 32 ............................ GGAAGCACCGAAACCGTAGGGCTGATCTCGAC 1122408 28 100.0 32 ............................ TTAAGGCGATGACGAGCTGGCGGTGTTCATTC 1122468 28 100.0 32 ............................ ATTGAAAATGTTTAAGATTGCAAGGTTCTTCA 1122528 28 100.0 32 ............................ GTTTCAAATTTTTCGGCAATCAGCTCGGCGCT 1122588 28 96.4 32 ...........T................ ATTGTTACTTACTCACTATTCCAAAGGTTCCT 1122648 28 96.4 32 ...........T................ TCGCGTAGAGATGAACCCTGACTCAGAGTTTA 1122708 28 96.4 32 ...........T................ CTGACGAAATGTTGATTTAACGCCCCCAAACT 1122768 28 96.4 32 ...........T................ ACAAAGAAAGACCAAGCAAAAGAGGTGTGGAT 1122828 28 96.4 32 ...........T................ CTCACCCTGAGCTTGTCGGTGAATTTATGCTT 1122888 28 96.4 32 ...........T................ TGTCGAGCTAACCACAGTGCGACTTTCCGCCT 1122948 28 96.4 32 ...........T................ ACCGGGCGGAGGGTGGTGGGAGATAGCTGATG 1123008 28 96.4 32 ...........T................ GCAGAGTTGCCATCGACCTCAACTTTTAAAGC 1123068 28 96.4 32 ...........T................ TGATCCAAATCAACCACGAAAAGACTTTGATC 1123128 28 96.4 32 ...........T................ GTTTTCCCCCAATGCCAGTGACACGAACATCT 1123188 28 96.4 32 ...........T................ TTCCAGACGCTTACGCACGAGATCTGGCGTAT 1123248 28 96.4 32 ...........T................ GTGGTCGTCCGTTCTGGACCTCTTCCGTTAGT 1123308 28 96.4 32 ...........T................ ACCAAAGTCCACACGGATGCAATTAAAATAGT 1123368 28 96.4 32 ...........T................ ATTCGAGGACGAAATCCGCGCAGACAACTGCC 1123428 28 100.0 32 ............................ AAACTCATCACGACCAGAGGATTCCGTCTCTT 1123488 28 100.0 32 ............................ CGACAAGGGTAAGCCAGACGAAAAAGGGCAAA 1123548 28 96.4 32 ...........T................ TGGTTGCGGTGCAGTCGGAGGTGGTCAGTTTT 1123608 28 96.4 32 ...........T................ CATAAATTCAAGTTGCCGCGCTTTGTCTGGTA 1123668 28 92.9 0 .........................TT. | ========== ====== ====== ====== ============================ ================================= ================== 69 28 99.1 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : GAGCGCATTGCATGATTTGCAGGGGTTAAATTGGTTAGGACCTTTGGCAGGATATTGCAAGATTACTACGGTTACTCATGTGCCAGACCAAGTGGAATATCGCATCATTTCAGTTAAACGCAGTAATTTAAGCAAAGCAAAATTAGCGCGTTTAATTGCTAGAGGTAGCATAGATAAAGATGGTGAGAAACGTTACAAAGTAAAAATGCTTCGCCAAGGGTTTGATAATCCATACCTTGATCTGTCTAGCAGTTCAACAGGGCAGGTGTACCGAAAATTCTTTGAGTTTAGTGATATTCAAGCTGAGCCAGTTGATGGTGAGTTTGATAGTTATGGTCTAAGCAAAACAGCAACTGTACCTTGGTTTTAACCCTTTATTTTTGCTCTTTAAAAATGTGCTTTTAAAACAAATGGTTGCAACGGGTTGTTTTTAACAAGGTAAAAAGATGATTTTTACCCTAACAGCTTGTTGCAGCTTATTTTTATCGGTTTATTCTATT # Right flank : AGAAAGTAAATCAAACGAGGCAGTTCACTTTCTAGATTACGTTAAGGTTCTTACGTTCTGCTACGTATATTTATTAGGGTTTTCTTAAATGGTCTTTTCCCAAGCATTAGTGACAAATTTCCGAGGTGTAATGATTAAGATAGCCCAGTTGATGAGTATCAGTTGAGGGGTAGTCACCATGAGCATCGTTGGTTGTGTTAATATCAAATCCAAGTATATCGATCGAACATGTCAGATGGTCTCGTAAGCCAAGTTTTACTCAGGGCGAGTTTTGCGTCAATAAAAATCCTTTTAGAATCATAACGTAATGAGCTATTGGATTACATCAGCTTCCATGTCTTAAGTGGAGGTTATATTCTAGATTATTTTCAATTGCCGAGTACCAGTCACAGATAGGCTACCTTTGGCGGCCTCTTCTATATGTCCGCTCCACCAGCTCATCATTGGCTTTCTGCGTTCTAAGTAGTCAGTGCGGTTATAGGCGCTACGCACTTGGTTGT # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //