Array 1 200759-201886 **** Predicted by CRISPRDetect 2.4 *** >NZ_AKWZ02000004.1 Leptospira fainei serovar Hurstbridge str. BUT 6 ctg1134728687806, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 200759 29 100.0 32 ............................. AAAAGGGACGAACCACTTTTTACGAAGTCATG 200820 29 100.0 32 ............................. GAACTTCCGAACACCCCGTTTGGATATGGTGC 200881 29 100.0 32 ............................. TGGTGAAATGTTTTTTAAGCGAATCGACCATT 200942 29 100.0 32 ............................. AGGCGGGTGGAATCGATTCCATTGACTGCCAG 201003 29 100.0 32 ............................. ATCCACCTTCTCGATAAGTCGAGAGATTTTAA 201064 29 100.0 32 ............................. TCGACCTTGACTTCCAATAACCCGATCGATTC 201125 29 100.0 32 ............................. GTCCAATTCATAATGATCTTCTGTAAACTCGT 201186 29 96.6 33 ............................T TTCGGATAATATCCGTTCAGATATACGGACTTT 201248 29 100.0 32 ............................. TCTTATCGATTTTGGATACGGATCAGAAAAGC 201309 29 96.6 33 ............................A GCTAAATTTCCTAACTTAAAATTGATATCAAAC 201371 29 100.0 32 ............................. TGTCATCCCCTACCAATCCCGCAACCGTTCAA 201432 29 100.0 32 ............................. CATCTTCTTCCTCCTTCGTGATCGAATGCTGA 201493 29 100.0 32 ............................. AGTAGCTACGCTTTTCAGAAGCGTCTTCTCGC 201554 29 100.0 31 ............................. GGGGTGATAGGATGAGTAGAGATAGAGTTGA 201614 29 100.0 32 ............................. CGCTGTGACTTCAATCCCTTTCGACCCTCTTC 201675 29 100.0 32 ............................. GAAATGGAAATCATAATTAAATATGATTGAGG 201736 29 100.0 32 ............................. CGAAATCCCAAGTTCTTGAAGTGCGTATCTTA 201797 29 100.0 32 ............................. GTCAACGAAAGCGTTTATCTTTCTGCTCCAGC 201858 29 75.9 0 ...C....T.....T..A.......TGT. | ========== ====== ====== ====== ============================= ================================= ================== 19 29 98.4 32 CTATTCCCCACACACGTGGGGATGAACCG # Left flank : TGAAACGAATTATTCCGGATGCTAAGGAGTTGATCTATGGTGGTATTGATCCTGGAGAGGGTGAAGATTTCACAGAGGGGAGAGATGTCGCGATTAGCCATTGAATTAAAACCCGGTGTCTTTGTCGCAACCGTAGGAGCAAGAGTTCGCGACCAAATCTGGAAAAAAGTCTGCGAAGAATGGAAATCCGATGCCTTAATGTTGTATTCCAGTAATACGGAACAAGGATATGTAATCCGTTCCAACGGGGATCCTTCAAGAGAAATTGTAGAATTTGAAGGCCTATTGTTAATCGCGAAACCGGATCCAAAGGCGAATCACCGGGAAGCCGAAGCGGCTACGGAAACTGATAGTAACGGTGACGGATCACCCGCTCCATCTCCGTTCTTAAGCCTCGAAGAATTCTTTAAAGAAAGGGCGGATTCGCTTCGCTCTGAATTGGACCATAACCCAGATAATTAATAGACATAATACATCAATTTGCTATACAAATTCTTAGC # Right flank : GCACAATTAGAGGTTCCGATGGTGTTCGATAAAATAAAAAAGCCAGAATATATCCATCCTGGCTTCCAGTAAGGTCTCTCGTACAAACACTATAACTGCGAATCTATTCAAGGATGGATCAAACCTTCGAAGTTTTCCACCCACCTTTCCGGAATAACCAAAGAGTGAACAATCCCACAGAAGTTTCCGTGATCATACTTGCCCAAAATACTCCAGAGTATCCGTAAGAAAGAACCTTCGCCAAAACATAAGCAAATGGAATTTGAAACACCCAAAAGAAGACCAGATTGATTAACGTAGGAGTGGTAGTATCCCCTGCTCCGTTAAAGGCTTGAACGCTGACCATCCACCAAGCATACACAAAATAAGAATAGGATACTATCCCCAACCACTCAGAACCGATAGCGATCACTTTGGTGTCATCAGTAAAGATCGACACAAGAGATTCTCTGAAAATAAAATAGCAGATGGAAACTCCGACGAGAAAAATCATATTCCAT # Questionable array : NO Score: 6.18 # Score Detail : 1:0, 2:3, 3:0, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTATTCCCCACACACGTGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTTTTCCCCACACACGTGGGGTTGAACCG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.20,-10.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 1694633-1694300 **** Predicted by CRISPRDetect 2.4 *** >NZ_AKWZ02000010.1 Leptospira fainei serovar Hurstbridge str. BUT 6 ctg1134728687817, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 1694632 29 100.0 32 ............................. CTATGAATCTTCTTAATGAAAAGAAGGTCCTT 1694571 29 100.0 32 ............................. CAGGCGATGGCCGATATTCTCAAAGAGAATCC 1694510 29 100.0 32 ............................. ATTCGGAAAAGAAGTAAATCCCGTAAGGTTCA 1694449 29 96.6 32 .............G............... CCAGGAGAAAGAGGAATCCGGAATCATTGAAC 1694388 29 100.0 31 ............................. AACGGCGAAGGACTCTTATATTCCTGGTATC 1694328 29 86.2 0 ......T.......T..........TG.. | ========== ====== ====== ====== ============================= ================================ ================== 6 29 97.1 32 CTATTCCCCACACACGTGGGGATGAACCG # Left flank : TTACGGGGCTTTACTAAACCTCTTTTCTTAAGAATACTGCCGATCGTGCTCGCTGCAGGCCAAATAATTTCCGGATGACTTCCCTCAAGTACTACAAGCAATTTGCGAGGTCCCCAAGTAGGGTGCTGCTTACGAACTGCAAGAATCAACCGCTCTTCCGCAAAACCTACTCGGTTCGGGTTTGTGTGCGGTACCCTACTTCTCTCCAAAAGACCTTCAGGGCCTTCCTTGCGATACCGTTCAAGCCACTTGTATCCCGTCTTTCTACTTATTCCAAATGTTTCACAAAGAGAACTTATGGAAACCGTTCCGTCGCATACTGCGGCAATGAATTTTACTTTCTCGTCCATAGGGGACACCTCTTTCCACGGCAAAGGATTTTCCTCCATTTGCCTAAATTTCAGTGTTACCTATGTCACAGGTCTATTCTGTTACCGATGTCTCCGGTTTGTACCGGGGGATGAACCGAAAATTGCCGATGATTTTGTAAAAACTCGTTA # Right flank : CGCAATTAGAGGTTCCGATGGTACCCACAAAATAAAAAAGCCAGGATATCGTATCCTGGCTTCCAGTAAGATTACTCTTACAAACACTATAACTGCGAATCTATTCACTGAATCATCATCTTGGATGACTGTTGGCGTTTTACCATTGAGAAAGAAGTAAGTCTTCCTCAATACTTTCGTAATATGGTCAAGCCTCACGACCTATTAGTATCACTCGACTCAATATGTTACCATACTTACATCTGTGACCTATCAACCGGGTCATCTTCCCGGGGTCTTTAGGGGATTGCTCCCAGGGAGATCTTATCTTCAGAAGGATTTCCCACTTATATGCTTTCAGCGGTTATTCCTGCCGAACATAGCTACTCAGCGCTGCCGCTGGCGCGACAACTGATACACTAGAGGTTCGTCCATCCCGGTCCTCTCGTACTAGGGACAGATTCCGTCAAATCTCCAACGCCTGCGATGGATAGGGACCGAACTGTCTCACGACGTTCTGA # Questionable array : NO Score: 6.11 # Score Detail : 1:0, 2:3, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTATTCCCCACACACGTGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTTTTCCCCACACACGTGGGGTTGAACCG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.60,-11.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [55.0-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 1696340-1695946 **** Predicted by CRISPRDetect 2.4 *** >NZ_AKWZ02000010.1 Leptospira fainei serovar Hurstbridge str. BUT 6 ctg1134728687817, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 1696339 29 100.0 32 ............................. GGGGAGTTGAGTTGGAAACTTGATTCTGCTCA 1696278 29 100.0 32 ............................. CCACCACCGTGGAGCAGGATTTCACGTATATC 1696217 29 100.0 32 ............................. AAAACCGTTGGATGGCTCAAGTCGATGTGGTA 1696156 29 100.0 32 ............................. TGGTAGGAGAAATGTTAAAGAGGGTCGTAGAG 1696095 29 100.0 31 ............................. TATGGACGAGAATTGTCCCGCAAATATCTTC 1696035 29 96.6 32 ............................C GGGGGGCGTTTGGCATTACAATCTACGTCCAC 1695974 28 82.8 0 ...................T..C.T-..T | T [1695953] ========== ====== ====== ====== ============================= ================================ ================== 7 29 97.1 32 CTATTCCCCACACACGTGGGGATGAACCG # Left flank : AGATTCTGTCCAGTGAAGGCGAATTGTTAAGCATTTACTTAAGTATTGAAGAAAGCGATAATTAGTCAAGCATTTGCTTAAGTATTCTTGGGGGAACTGCCGTTGTTAAAATAGGGTAAAAAAGGAACATTCAAATCCCCGCTTACACGAGCGAAGGCAAAAACCGCGTGACACTCAGTATCAAGTATTTCTGCTCCTTAAACCGCGGCAGGAGATTGTCTACGGCACCGTCTTTTCTTACTACTCGATCCACAAAAATCATAAAGAGTTCTTTAAGCGATGTCGCAAATATATCGAAGCGCGTTAGGAGATAAAAGGTGCGCATCACCCTTTCCGATCTGCTCTTCCCTTCTCCCGCGACAGGAGTTACGGAATAACGCGTTTTTTCGTCTTTTTTTATTGGGACGAAAAGAAAGGGCGGATTCGCTTCGCTCTGAATTAGGCCATAACCCCGATAATTAATAGACATAATACATCAATTTGCTATACAAATTCTTAGC # Right flank : GGAACATAGGTAACACTTTAGACCGGAGACATGGGTTACACTTTCAAAGTCCTAGATATTTTCTTTGTGTTCTCATTCAAATAACCTATTTTCACAAAGCTGAAGTAAATGGCCCATATACCGTCGTCGACAGGTTCAAGGCCGATATTCTCTCCACCTAAACTCTTCGTAATAAAGAATCTTTGATTTTTCCAATAAAAATTACCGTCATCGACTTTACGAATTTCAAAATGATCCGGATAAAATATCTCGGATAGACGATTCGGATAGGATCTTAGGGAAGGTTTATAGATCTTCGCAGGCGGCTTTTGACCTAACGCCTCATGGGGACGATCATGGTTATATTCCGCTCTAAAACGATCGAATGCCTTTTGCTGCTGTCTCATATTAGAACGAATCGGATAAACCGCTTCTGCCTTCAACGTCCTATGCATTCTTTCATGCCTTCCGTTCTCTTGTGGTTTCCCCGGATGAATCCTTTCCGGAAAAATACCTAATTT # Questionable array : NO Score: 6.11 # Score Detail : 1:0, 2:3, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTATTCCCCACACACGTGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTTTTCCCCACACACGTGGGGTTGAACCG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.60,-11.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [60.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //