Array 1 426873-426578 **** Predicted by CRISPRDetect 2.4 *** >NZ_UWOK01000001.1 Campylobacter showae isolate CAM, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 426872 30 93.3 36 A...............C............. CCGTTTTCTAACCAAAATTCTACCTGCGGCTCTAAA 426806 30 100.0 38 .............................. AAACACTACTTGATCTTCTCTATCCTAAACACCTGATC 426738 30 100.0 36 .............................. ACGTCCGAAGCGCAAAATGGGAGTATATCGATTTTG 426672 30 100.0 35 .............................. GAAATAATAGTTTTTCTCTTTCCTCATCTGTAAAA 426607 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ====================================== ================== 5 30 98.7 36 GTTAAAATTTACTCCGTTGGAGTTTGAAAC # Left flank : CGACGAGGTTTGGGATGAGGTCAAAGCGCCTTTTTAGCTGCGTATCGACGCCGGATCTGATGTTTGAGACTTGGTTGCGCTTGCCCACTAGCGAGTTGTAGACCGAGATAACGATGAGCGCGAGAACGGCAATGATGCCTAGGACGATGTACATTTTTGCTCCTTTTTTGAGTGGGATTATAGCTAAACGGGGCTAAAATTCGTAAATTTGAGCTTGATTTTCGGCTTTTGGATGGCTGTTTGGTTGCCCGCTACTGCGCGGAATTTTGATCGTTTGCGCAGCTTGTTTGCGTATTTTGGTTGCGCTAAGATTTAAAGGCTTTAGCTTGACGGCGGATGTTTTTACTGCTACTGCGGATGAAGATCAAATTTGACTTCGGATGTAAATTTTCAAGCGGATTAAAATTGCTGCCAAATTTGATCTCGCACCAAATTTGGTATGCTTTCAATAAAGTAAATACGAAAATAATAAATTTAAAAACACGTAGTTAGATTTTAGC # Right flank : TAGCACAAGATGCCAAAAATGTCAAAAAGTGTAATGTTAAATTTTACCCCATTGCAGCAAAACAATGTTTCAAAGGGCGTAGAATATAAAATTCGCAGATAAATTTCACGTTTTCAAAAAGCCGTATCCGAAGCCAAAATCATCGTAAATTTAACCTCGTATACGACCGATGAACGCTATTTGGCAGATTTTAAAATCGCCTGATAGCCTTGTTTTTTGAGCACTTCTACGACTGTATTTTCCGCAAAGTCGTCCTGGACGACGATGTCGGCCGTTTTAGCTTCCAAATTTACCTCAAATTTCTTCACGCCGTTAAGCGTATTTAACGTCTGCGTGATGACCTCGTAGCAGCTCACGCAGGACATATTGGGGATCTCGTAAACCAGAGTCTTGTCTGCAAATGCCGCCGCGCAAAGCGCCAGCGCTAGAGCTAGCTTTTTCATTCTTTGATACCGACTTTGTATTTTTTGGCTTGGATCGCGTTCACGACGTCCATCACG # Questionable array : NO Score: 3.00 # Score Detail : 1:0, 2:0, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTAAAATTTACTCCGTTGGAGTTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-3.70,-4.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [66.7-78.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,0.64 Confidence: LOW] # Array family : NA // Array 2 444714-449540 **** Predicted by CRISPRDetect 2.4 *** >NZ_UWOK01000001.1 Campylobacter showae isolate CAM, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================= ================== 444714 30 100.0 34 .............................. CTCCTCAGCCAAGCCAAGACCGTCGGCCTCCGCT 444778 30 100.0 35 .............................. GCCCCGCTTTTGCGTCCTTTATGTCGCCTTTTAAC 444843 30 100.0 34 .............................. TCTACCAGCACGATACAAATTTAACCCTTTCTAT 444907 30 100.0 37 .............................. AATATAAAATCAAGAATGGTGCACCCCTTACTATTAG 444974 30 100.0 38 .............................. AAGCCCATAATCTTTCTGATAACTAGCTCGCTCATGGT 445042 30 100.0 37 .............................. AATGTCCTATTTTTGGCTGTTTCATGTTGGTATTCAT 445109 30 100.0 34 .............................. TGAGGTTGAAAGCACGTCGGGCAATGAGGTTGTG 445173 30 100.0 34 .............................. TCATCAATGAACAACAAATGGCTAGTAGATTTCA 445237 30 100.0 37 .............................. CGGGGATAGAATTTACGTCTGCTCCAAAGCCAACAAA 445304 30 100.0 37 .............................. TCAAGATTCAGCATAGCGCCGCCGTGTTCTATCGGCA 445371 30 100.0 36 .............................. AGCAGCCATACGGCAAAAAGTCAAAGCAGTTTTTAG 445437 30 100.0 35 .............................. TCATCTGCATCGTTAGATCGGTGTTTGTAGCGTCG 445502 30 100.0 35 .............................. AAAAATATGCCAGCTCCGTTTTTCATAAGGTCGTC 445567 30 100.0 36 .............................. AATTTAGAGTTTGACAAAAAGATATCTTTGGCTTCG 445633 30 100.0 35 .............................. TGCAGTGGTCAAAAAAGAACACAAGACCGATATCT 445698 30 100.0 34 .............................. CGCTTATCATAGCGATTGTGACTTCTTGCATTAA 445762 30 100.0 35 .............................. TTTTTAAATATAAAAAATAGGTGAAAAATCCCCTA 445827 30 100.0 34 .............................. TCTAGCACTCGTATTTTATATTTTAGGCGTATTA 445891 30 100.0 36 .............................. CAAAAACGACAAGCCGCAATACAATTTCCACGCGCA 445957 30 100.0 36 .............................. GAGCTAAAAGCCGAGAATAATGAGCTTAAGAGCTTT 446023 30 100.0 37 .............................. ATTACCGAATTGTAACTTTGTGTCAGTGAGGTAAAAA 446090 30 100.0 36 .............................. GCGTCGACGTAGTAAAAGCCGTTAGACTCAAACAAA 446156 30 100.0 35 .............................. ACCTTTGTAAAGAATATAGCATAATGATGAGCGAT 446221 30 100.0 36 .............................. ACGTTGTGGCCAAAGCTTTCTTTTGGAATGACATAA 446287 30 100.0 39 .............................. TGGTCTTGATAAGCATTCATTGTAGCTATTTCTATCCTA 446356 30 100.0 36 .............................. GTTCTCTTTGTTGCCTTTCTTGCTCTTGGATATTGG 446422 30 100.0 36 .............................. TAGTTACGTAGGCATTATCCTGGCCGTTATCTTGCT 446488 30 100.0 36 .............................. TCTCTAAAATAAACAGACATATTCCCTCGGCTCGTT 446554 30 100.0 38 .............................. ATAAAATCTATTATGACTGGCGTGCCGATTGGAACTTT 446622 30 100.0 36 .............................. CTTTTTGTTTTAGAAATGGATTAGGGGAAGCTTTTG 446688 30 100.0 34 .............................. TGTATTTAATACCTTTTTCGCCGTTCCCGATGAG 446752 30 100.0 35 .............................. TCCGGCATAAACAAAACCACTACACAAAAACAGCG 446817 30 100.0 34 .............................. AATAAATTTGTTGAGGGAACAAAAACTGACTTAA 446881 30 100.0 36 .............................. GACGTAAGAAGCTTAAACATTAAAGTTTGATTAAAT 446947 30 100.0 37 .............................. ATAGTAGTTTCTTTGCTAAGATTATCCTCTTTTTCCT 447014 30 100.0 36 .............................. CTAATCCAAACTGCAAACCTGACAACAACCCAGACC 447080 30 100.0 35 .............................. GGTACGAAACTGGCTACCTCAAGCGGTACGCCAAG 447145 30 100.0 35 .............................. GTTAAAACCGAGCGGTCAGCGTCTTTTAAAAAACG 447210 30 100.0 35 .............................. TGTTTTCAACATCGCTCTTAAAAGTGTTATTCGTG 447275 30 100.0 34 .............................. AGAATTCAAAAAGACCTGCTAGATAAGCTGCAAG 447339 30 100.0 34 .............................. ACAAATTTGGCGGGTATTCATACAGAAGCTGTGA 447403 30 100.0 35 .............................. AAGATAGCGGTATAGATGAAAGCACAGTATCAAGA 447468 30 100.0 36 .............................. AAAGCTTGCGAAGTCGCGCCTAGATTTGCGTTTTTG 447534 30 100.0 36 .............................. GCAAATAGCTTTCTTAGACTACTCGCGCGTATTGCA 447600 30 100.0 36 .............................. TAATTCGGTCGCAAAAAATGGAGCGGGGCTAATCAA 447666 30 100.0 35 .............................. AAGGGTCAATGCCCCTACAAAATAAGCGAGTTTGG 447731 30 100.0 38 .............................. CTGCTGGTAAGGGCGTTTTGGAATTTTGCACCATAAGC 447799 30 100.0 37 .............................. CGTTGCTATCTCGAAAAAGATTGCGATATAGTCGCCT 447866 30 100.0 37 .............................. AATTTATATTGTTCTATCGCTCTAAACTCATTTAAAT 447933 30 100.0 34 .............................. TATCCATTTCCCTATCATCTCTATTGAAAACATC 447997 30 100.0 37 .............................. TTTGCGTTTCGCACCGAACGAGCGTAAGGGGCAAAGG 448064 30 100.0 37 .............................. CCGAAACTAACGCGTAGCGAAACGGGCGAGATGTTTG 448131 30 100.0 35 .............................. TAACTTAGGGCGCAATATGGGCGTTTACAGCGCAA 448196 30 100.0 36 .............................. TTTAATAGAGCTTGACGTATATACGAAAACCTTTAA 448262 30 100.0 37 .............................. CAGGGTTGCTGGGGCTATGATGCTTTTTGCGATAACG 448329 30 100.0 34 .............................. GCGACGTAGTAAAACATTCCCGCCATTTCGCCCG 448393 30 100.0 38 .............................. GTAGTTGCAAATCGGTTATATTGCCGCCGTCTACTTTA 448461 30 100.0 34 .............................. AAAGCTCATTTACGCGGCCGCATACGCTATTTAT 448525 30 100.0 36 .............................. TTAAAATACGGCCACGAATATTGTATGACCCAAATT 448591 30 100.0 35 .............................. TATTAAACAATACTGTTTGTGCTTCGTCAAATAGA 448656 30 100.0 38 .............................. AACGTTATCTTGCCTGCGAAGTCTGCCTGCACTCAAAA 448724 30 100.0 36 .............................. TTTACAAAAGAGAAATTTTGCATATAGTCTCTTTGA 448790 30 100.0 38 .............................. CGGCATATTCAGAGCTTGAAAAATCCACGCAATTTTAT 448858 30 100.0 37 .............................. AAAGCCTAATCCTTGAAATGAAAAATACCGTCTCCTT 448925 30 100.0 35 .............................. TTTATCAGACGCAAAATTTAAGAGCTACGCCTAAA 448990 30 100.0 38 .............................. ACACCGACGGCAGAAAAATAACCATACTCGACAGAAAC 449058 30 100.0 35 .............................. CGGTTTCGAGTAACTGCTTTCTCATTTCGACGTTG 449123 30 100.0 34 .............................. AGTTCATCGCTCTCAAGCTTGATGGCTACCGCCC 449187 30 100.0 37 .............................. AAATACATAGAACAAGGAAAATTTAAGGACACAACTG 449254 30 100.0 35 .............................. CGTACGAATGATTTTTGAGATGATGATTGTCCAGA 449319 30 100.0 36 .............................. TTTTTGCTCCCAAACGATACGGACGCCGAGGACTAT 449385 30 100.0 36 .............................. AAAAATCTTGCTTCTAAGGTCGGACAGACTACGGGA 449451 30 100.0 29 .............................. ACAAGTGTGTAGGTTAATTCATAACCCTT 449510 30 83.3 0 ..C..CG....................TG. | T [449532] ========== ====== ====== ====== ============================== ======================================= ================== 74 30 99.8 36 GTTAAAATTTACTCCGTTGGAGTTTGAAAC # Left flank : TGCTTGCATTTTGATGATTTGATTGTGACAGCACGATTTCATAAAAACTCACGCCAAAAATGTTGCGCAAAAATCGTTACGCATTTGCGACGAAATTTGACTTATGCGTCTTTGGTTGTTTTGCTCCCAGCGTTGAGAAAATTCGCATCAAATTTGACTTATGCGTCTTTGCCGCGGTATTGGTTTTTGCACTAAAACGGCGTTTGTGATTTTGCTTTGGATGTTTGTGATAAAATATAAAATGCACTCGACTTATAAAATTTGCTTTGATCGCTATAGCGGGTTGAATGTTGTTAATTTGCTCTTACCGTAACGGGACATTTGATTTCTAAGTGCCCTTTTTAAATCTAAACTATGTCGATAAAGCTTTTTCTAAGATTTTAGAAATGATGAAATTTAGGGTATTTCGTATCGATACTATTTTGCTTTTTATGCAAATTTAAGGCGTAAAAATATAGACTTTGAGTTTTAATAGCCCTAAAAATGTATATTTTGGTGCT # Right flank : CAATCAATTTTTGCGGCTTAGTATGCTGTGCGATTGATTATAGACGGGCGACAAAAATAAAGTTGTAATAAATAATTTATGATTTTCTGTTAACTTAGCTAACAGCCTACCGGTTGATTGCCTGCAAGCAGTTTTTCTAGCTTGCGATTTTTAAAGAATTTGACGACGTCAAACGCGATCTTGGCAGCCAATAGCGCCAAAAAAACGTGTCTAAAAGCATAAAATTTGCCTAAATATTTATGCTTTTTCATGAGCTTTAGCGCAAGCGTTTTTATCGCCTCTATCGGCTTTTTGATTGCTTCGCCGATCATTTTGTCCTTTATCTCGTGGACGACGAGAGCAGTGATGGTTTTTAGGTATTTTTTAGTTTTGGGGGCGGGTAAATTTTGCGTCTTAGTTTCGTCGTAAACGCCGTCAATCCAAGCTTCAAAATTTTGCCGAGCATTTTTGCTTTTTAGGAGTTTTTCGCCGGCTTTGCTTATCTCGTAAATCCCGCGCGA # Questionable array : NO Score: 3.25 # Score Detail : 1:0, 2:0, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTAAAATTTACTCCGTTGGAGTTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-4.60,-3.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.05,0 Confidence: HIGH] # Array family : NA // Array 1 56654-56384 **** Predicted by CRISPRDetect 2.4 *** >NZ_UWOK01000002.1 Campylobacter showae isolate CAM, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ====================================== ======================================== ================== 56653 38 100.0 39 ...................................... ACTAAATCCATCTTAGGTAAAATTGCTGTTTCTAAGAAG 56576 38 100.0 40 ...................................... CTATGTTTGTTCTTATTTGGACCTATCTCTGGAACAATGA 56498 38 97.4 39 ..............T....................... TAGAAATCTACAAAATCTCCTAATACTCTCCAGTATCTA 56421 38 89.5 0 A...........T.T......................A | ========== ====== ====== ====== ====================================== ======================================== ================== 4 38 96.7 40 TATTTGATTCAAATCTCCCCGATCTAGGGGATTGAAAC # Left flank : GCTTGACATTCGCGATAACGAGTACATCTGTATAAAAGACCGCATTGCCCGCATCATCGACCCCAAAACCGACAAAGTCCTTTTCTACCGCCTCTGCAAAACCTGCCTGGCTAAAAGCGAAATCTTAGGAGAAGCCAAGATATTTCATATCTCAGATACATATATCTAAAACTCCCTTTTTAGGGATTTGATTCTCGAACTTTTATAAAATTCAAAAAGCCCTATTTTAGGGACTTTTATATTTTACTAAGTTTCAAAAAGTCCGAAAACCTCAAATTTAATACTCCTAAAAAATAGATTCTCGGACTTTTAAAATTTAGTCTGTTTGAAAGTGCCTATTATAGGGTATTTAAATTTAACGAATTTAGCAAAAGTTCGAAAATCTACTAAAATTTCATTTTTGAAAATAGATTCTCGGACTTTTTAGCTATATATGATATAATGGCGTTTCTCAATAGTTCTTTAAAAACTCATTGTTAATCTTAATGCGTTTTTTAGGC # Right flank : TATGGTTTAGATTTATTTTAGTTAATCAAATTTAAAAGATTAGAAGTTTGATGAGTATTTTAAAGTCTTTACATAAATATGATATTGATATCATAAGGATACTAATATAATATTTAGCATTACTACATGAAGCATTAGAACTTTGGCGGTAGTCGAGTATTAATGCCTTAAATAAACAAGATGATTTTTATGGGTGAGATATAAAATTCAGATATAGTCTGATTGGCGGCCATGTAAATTATGGTTTGTTTGGATGCATTAAAAACTTCTCAAATTTTTAACGCATTGCCGCCGATATGTTAAAAATTTAGTATTTTCTTAACATATTATGGAAGACTTGTGTGCTATAGTACTAGTCCGCGTTGTAATATTTCAAACAACTTTAAATTTACAAAGTAATTTATACGACCGAGCTTTACGCATTTAAATGCTCCTAGTTTTTCGCAAATTTTAAGATATTTAGAAGCTGTTTGTCTAGAGATATTTAGTTTTTTCTCCAC # Questionable array : NO Score: 5.70 # Score Detail : 1:0, 2:0, 3:3, 4:0.84, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TATTTGATTCAAATCTCCCCGATCTAGGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:60.53%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-8.60,-9.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [81.7-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.28 Confidence: HIGH] # Array family : NA // Array 2 104406-106576 **** Predicted by CRISPRDetect 2.4 *** >NZ_UWOK01000002.1 Campylobacter showae isolate CAM, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ============================================== ================== 104406 37 100.0 36 ..................................... GGGACAAAGCCTCATAATAGCACGGCGCAAAGCACC 104479 37 100.0 38 ..................................... GTTGTAACCCTGCGTTGCAAGCTTTTCAGCTTGTTCGT 104554 37 100.0 41 ..................................... GGTGTTAAGGAAATTTTCCCTAGCACCCTCAAGTAAGTCGC 104632 37 100.0 37 ..................................... TTTCTTTCCTCGGGAAGAGAGTCAACGATCTCTTCCA 104706 37 100.0 38 ..................................... CTTACTCTCTTTCTCTTCTGGAAGAGACTTTACTACCT 104781 37 100.0 46 ..................................... AGTATGACTTGCACTCGCATGAACGACGTTCATGGTAGCAAGCAAA 104864 37 100.0 40 ..................................... TGGTCCTGTTACCAACCAAAGTATGGTTGGAAGAAATATA 104941 37 100.0 38 ..................................... TTCTTTCGAAAGGACCTTCCTTCCTTTCGGAGGGAAGC 105016 37 100.0 39 ..................................... GACTTCATCGTCATCAGCTCCTTCTGGAGCAACATAATC 105092 37 100.0 37 ..................................... AAGAAATGCCTTACCATATTTGCCATTCCATGGCACA 105166 37 100.0 40 ..................................... TTTGCTCTTTCCCTCACCTGTGGCAAGCCACAGTAGAGTT 105243 37 100.0 37 ..................................... TCTGTATTTGTTTCTTTGGTAACATAGTTCTCAAGCA 105317 37 100.0 34 ..................................... TCTTTCCTGGACCAGTAATAGCCCATAAGATTGT 105388 37 100.0 40 ..................................... GGTAAAAACATAAAGCATAAAATTACTTCTAGCATTATTT 105465 37 100.0 41 ..................................... TTATTTAACTTTGCCTTACCTTCACCAGTCATAACCCATAA 105543 37 100.0 41 ..................................... TCAAAGAACGCTTTTCCGAAGCGTCCATTCCAAGGTTGGTA 105621 37 100.0 39 ..................................... CTACTATCTCTTCTAATGTCGAGATAGTAAAGTCATTTA 105697 37 100.0 39 ..................................... CTCCTCAAGGGTGTTGAGAAAGTTCTCTCTGGCACCTTC 105773 37 100.0 41 ..................................... AAACTAGCAAGTTGCGTATCTAACGCTTTAACCGCCTCAAA 105851 37 100.0 43 ..................................... ACACGTTTCCATACGTGCCTTTACAGCCTCCTCTACCAGCATT 105931 37 100.0 37 ..................................... TCTGTATTTGTTTCTTTGGTAACATAGTTCTCAAGCA 106005 37 100.0 42 ..................................... TCAAACTCAACTTCGTCGAGATTTGTCTCTTCTGGAATATAG 106084 37 100.0 39 ..................................... GCTGTACCAGTTTCCCGGATGTCTTCAGCTTTCTTAACA 106160 37 100.0 41 ..................................... GACATATGTACCATTATTTACTCCTTAGTAATTCGATGTAT 106238 37 100.0 39 ..................................... GTTATCCTTCCAATCGAGCTCTGCATCAATGCAAGTCTC 106314 37 100.0 39 ..................................... ATTTTGAGAATCTGTCTTTCAAACTACACCTCGAAGGCT 106390 37 100.0 37 ..................................... ACGAAACAATAACATCTTCACCATTCATCTTACGTGT 106464 37 100.0 39 ..................................... GAGATTTGTTTCGTTGGGAACATAGTTCTCCAACAATTC 106540 37 89.2 0 ................................T.TTT | ========== ====== ====== ====== ===================================== ============================================== ================== 29 37 99.6 39 ATTTGAACAAATTTGACCCGATCTAGGGGATTGAAAC # Left flank : TTTGAGCTTTGCAACAAACCAGCCATCTTTGAGATGCAAGAACTCTTTGTCTAGCTTATACCATTCTTATGTTTTCTCTCCAAATTTAGATTTGCGAACTTTTTTAGCTTAAATTTGCCACTTTTTGGTTAGAATCTCGCCAAATAAGTTCGCAAATGTCTATATTTTAAAATATACTCTTCTACATTTGCGAACTTTTAGTTGTGCTTAAGTTTAGGATAACGTATTTTAGGCTATTGCGAAACTTATATATCGCTTAGAGTTCGCAAACCTATAAAATTTGAAAATTTTAAAAGAGATTTGCGAACTTTTTTAAGATGACAAATGCCTAAATTTGGGGGTTCTTTAACTTATCATTGTTAAATTTGCCAAGTTAGTATTTTTTAATACCTATACATTTGCGAACTTTTTTGAGATTTTTGCGAATTTTAGGTGTTTTAAAAGATGTTTTCTTAAATAAATTTGTTAGTTTTTATTTTGCGAGAATAGTCTTTTAGGCT # Right flank : TATAGTTTGTGACGCAATTGAACGGCAATGCTTTTGATATGTTTTGTTGGTCTATGAGGGAGGTATAAAATTTGGCAAGAAGAGATCAAAGATCCCAAAAAAGATTATGGCAAAAATCCTTTTTTAACGGTTTCTAGTCCTTTTAATGGGTTTTTGCTAAGGCCAGCCCGCATCCAGTTGAATACTCGGCAAAGATAAAGAGTTAGAGAATGAAAATAGAAAGAGAATTTTGGCTTTCTTACGAAGATTTTGTAAATTATTAAATTTACAAAACGAGGGTCGCCTATGTCGTGAATAAATTTTAAAAAGATTTGAAATTTACAAAGTAAAATAACCACAAGCTACGTCTATTGAGCTGCAGATATTTCATGTAGTAAACTTGATTTCATATTTCCTAGAATGTCCATATTTTACTAAACAAAGCAGTCATAAAGAAGCCATGAACCCAGTCCACGGCTTGCATAAGCCAACTATTTGGAAGTTGGCTTCATGCGGAACGT # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:0, 3:3, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTTGAACAAATTTGACCCGATCTAGGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:62.16%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-5.10,-3.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [76.7-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : NA // Array 3 135579-136304 **** Predicted by CRISPRDetect 2.4 *** >NZ_UWOK01000002.1 Campylobacter showae isolate CAM, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== =========================================== ================== 135579 37 100.0 40 ..................................... CTATCTCTTCAAGAGTAGCAATAGTGAAAGCATTCACTTT 135656 37 100.0 38 ..................................... CCTACGATGTCCATTAGCTTCCAGCCTAGATAAATACG 135731 37 100.0 41 ..................................... TTTAAAATCGTAAATTCCGCTTTTCGTTACCTTTGTCGAAT 135809 37 100.0 35 ..................................... GTCATTACGTCCTTTCCCACCGCGGATGTATTATA 135881 37 94.6 43 ..................A...T.............. TGGATCGCGCGCAATTATTGGAGCGTTCTTTTACAAAAAATTG 135961 37 100.0 39 ..................................... TAGCTTGGTGCAAAGCACCAATATTCACCACCGATCAAA 136037 37 100.0 40 ..................................... GATTGAAGAGATATGATACTCTCTTTAGTATAGATCCTAC 136114 37 100.0 43 ..................................... CTTGCTGCTGATAACCACCGCCTTGTTGATAACCTCCTTGTTG 136194 37 97.3 37 ......................T.............. GCTGTTACAGCTACAGATAATGGTGTATGATGAAGTA 136268 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== =========================================== ================== 10 37 99.2 40 ATTTGATTCAAATTTCCCCGATCTAGGGGATTGAAAC # Left flank : AAACCTGTATGGCTAAAAGCGAAAGCTTAGGAGAAGCCAAGATATTTCATATCTCAGATACATATATCTAAAACTCCCTTTTTAGGGATTTGATTCTCGAACTTTTATAAAATTCAAAAAGCCCTATTTTAGGGACTTTTATATTTTACTAAGTTTCAAAAAGTCCGAAAACCTCAAATTTAATACTCCTAAAAAATAGATTCTCGGACTTTTAAAATTTAGTCTGTTTGAAAGTGCCTATTATAGGGTATTTAAATTTAACGAATTTAGCAAAAGTTCGAAAATCTACTAAAATTTCATTTTTGAAAATAGATTTTCGGACTTTTACTATCTTGCAAACTACCTAAAATTCATTATCTTAAGCATAAATTTAGTAAAACGCTAGGATTTGAAATTAAAATTTAGCTAGATTCTCGGACTTTTTAGCTATATATGATATAATGGCGCTTTTCAATAGTTCTTTAAAAACTCATTGTTAATCTTAATGCGTTTTTTAGACT # Right flank : CCGTAAAGAATATGAAATAATATTGCTAAGATTGTAGGGAGAAGAAAGGTAATAGCTTTAATATTTTTTGGTACGAAACTTCAGTTTAATAGGCATATAATACAGAGAAAGTTAGAGATCTTCCAACTGAAGAGATAATAAAATATCTCAAGTTCTTAAGGGAATATGAAGAACAAAAGGTGTCCTAAATAGGACTAACTAAAGTACAAAAACAAAGGAGTACAAAATGAAAAAGTTATTAGTTATGATGTTGACGGTTTTGGGAATATGTGTTGGTAGTTTTGCTAAAGAATCGTCGAATAATAGCGGAAAGGAGATATATCAGAATCTCTTTTTTGTAACAGATAATCAATGCCGTTTACTAGGCAAGCAAGCCTACTTAGAATGTTGGAGTTATATTACTAAATACGAAGAATATTTCTTAAAATTAAGAAACTTAGATACTGATTATGGTAGCATATTTAGCTTAAATAAAAATGACTTAGCGTTTGTTATAGATC # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:0, 3:3, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTTGATTCAAATTTCCCCGATCTAGGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:62.16%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-9.50,-8.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : NA // Array 4 191804-196016 **** Predicted by CRISPRDetect 2.4 *** >NZ_UWOK01000002.1 Campylobacter showae isolate CAM, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ================================================================================================================================================================================================== ================== 191804 30 100.0 37 .............................. GGTTTCGACAAAAAATAGGGCACAGTTTGAGGCACAC 191871 30 100.0 37 .............................. CAGGGCACTCAAGCCAAATCAGCGACAAGCACTACTA 191938 30 100.0 37 .............................. GCGGTAGCGGTAGTCGTGATAAACTCCGCTACCCATT 192005 30 100.0 38 .............................. ACGAAACAATACCGTTTTAAAATACAAATAAGGGGGCT 192073 30 100.0 38 .............................. TATTTTTTGGAGATAAATATGAAACAAATGGATTATCT 192141 30 100.0 36 .............................. AAATCTACCTCACGAGCGAGGATATACAAGAATTCC 192207 30 100.0 35 .............................. TTTATCGTAGATCAGTATTTTTGCCCCATCCATAT 192272 30 96.7 34 .........................G.... GTTAGCGCGACGCCGTATTTTTCTAGCAGGGGCT 192336 30 96.7 36 A............................. AATATCGGCTCTAGTGTTTGCGAACGCAAAATGCTA 192402 30 100.0 37 .............................. CAAACTACGTCCTAAAATCGCAGCTAAGCTCTTATAC 192469 30 100.0 36 .............................. ATACTCAAAAGACCGCTACACAATCTAGGCGCAGGC 192535 30 100.0 35 .............................. TTTAAGCGTCCAAAAGAGGTGAAATTTTATTCTAA 192600 30 100.0 36 .............................. TTGTTATAGCTTATGGTTGGGCTGCTTTTAGACTTA 192666 30 100.0 34 .............................. TTCCAGGATTGCCGACTAGGTAGGTTATCATAAT 192730 30 100.0 36 .............................. TCTCGGGATCGGTTATGGGATTTTGCAAATTTTTAA 192796 30 100.0 36 .............................. TTCAAAATTTACAACAGCTCTCTTGTTTTCATCAGC 192862 30 100.0 35 .............................. TATAGGCTCAAGTCCTTTGTTGCAAAGCGTTGAAT 192927 30 100.0 35 .............................. TATAGGCTCAAGTCCTTTGTTGCAAAGCGTTGAAT 192992 30 100.0 35 .............................. AATAGCGGCATGTATAATAATTGCATTCGGCATAA 193057 30 100.0 37 .............................. ACGCTACGCGCCGCACGACACACATTTTTAGATTAGA 193124 30 100.0 36 .............................. CGAGTCTGTTCAAAAAGTGTATATGGATATGGCATA 193190 30 100.0 36 .............................. TATGCATAGTTATTGTGAAGATTCAAGCGGTAACAC 193256 30 100.0 36 .............................. AAGATGATGTCTTTTTATAGTTTTAGATGTCATGTA 193322 30 100.0 36 .............................. CGTCTTTCGGACGCGTCGCAATATGAACCTTTATTT 193388 30 100.0 35 .............................. CGGGCGTCCCGGCTTTTCTTTTATTGGCCTTGCGA 193453 30 100.0 36 .............................. GCTTCTCGGTATTTTGATTTTGCACTGGCGCGACGA 193519 30 100.0 36 .............................. TGGTTTGTAGTATCGTTTTGATAGGTTGGTCGGCTC 193585 30 100.0 35 .............................. CTCGTATTTATCGGGGTTTGATTTCATATCGGCTT 193650 30 96.7 37 ........T..................... AGCAGCTAGGTTATTCAGCGTTTCATCTAGCTGCGCA 193717 30 96.7 36 ........................C..... ATCATTTTAAATTCCTTTCTATCTTGTTTGTTATAT 193783 30 100.0 36 .............................. CTATATGCTTTGCTATGATAACCTAGAGTGCCATTA 193849 30 100.0 38 .............................. GATATACAAAGGCAAAAAATGGCTTTTAAAGACTCGAG 193917 30 100.0 34 .............................. ACGTAAACGAGCTAGGACGAAGCGTAACCGGAGC 193981 30 100.0 39 .............................. GAGGTAGCAAGAGATATAAGAGCCTCTTTGCGTAGGAGC 194050 30 100.0 36 .............................. CCTGGATAGAGGACGTAAAAGAAATCAAAGAGATGA 194116 30 100.0 34 .............................. CAAGCATTCGCGCTATCTTGCTTTGCTCATCCGT 194180 30 100.0 35 .............................. TTGTATGTTTTTTAGGACGGCGATAAATAAAATAA 194245 30 100.0 37 .............................. ATAGTATTTTAGTGCCCACTCGTCGGGGCTGATAAAG 194312 30 100.0 36 .............................. TGTTTCGACAAGCTCGTAGAAAAATATCTCCTAAAA 194378 30 100.0 35 .............................. GCTCACGGGCCTAATCGCCGCAAACTCCTCAAACG 194443 30 100.0 34 .............................. CAATTATTGCTCCGCAGAGCCCATTTTTAGGGGG 194507 30 100.0 37 .............................. ACTTATCTAAAATTTGCTCCAAAATATTCATCTTTTT 194574 30 100.0 37 .............................. TGAAAAATTATCGTTGATGTGCTTTGCAATGCCGTTA 194641 30 100.0 38 .............................. GGAGCTTTGCCCTCTTTTAGAGAGCCTAGCGCTTCTTT 194709 30 100.0 34 .............................. TTTTATGCGCCGCAGAATTTGCGCGTGGATGCCA 194773 30 100.0 37 .............................. AGCAAATTCTCGGGGTATTGCTCTTTTAGCGTGTCGA 194840 30 100.0 38 .............................. CGACGCTATAACCCCGCATCAGGCGCGAAACGGCGAAA 194908 30 100.0 37 .............................. GAAGCCGAAATCGCGCTAAAAATAAGGGAACAAGAGA 194975 30 100.0 36 .............................. TTGTTAGCGGGATAAAAAATTCTAACGTCAAAACAA 195041 30 100.0 38 .............................. TCAATCTTATTTGCAATTAATTTATTATTCTTTATATA 195109 30 100.0 35 .............................. CGTCGGGTTGGCAAGAACCAACAGGAGAAACAGAA 195174 30 100.0 34 .............................. ACGACATCAGCGATTATCTTTACGACTTCGCCTT 195238 30 100.0 38 .............................. TCGCCTCGCAGACCAAATTCCCTAATTTCTCGATATGA 195306 30 100.0 37 .............................. TAAATATCGGTTCCGAGATCGACAAAAACGGTACAGA 195373 30 100.0 34 .............................. TGAAAGCTTTGGTATCAAAAGCTTTGTTTTGCAC 195437 30 100.0 34 .............................. GCCCGACAATAGTAGGTTTTATACGCAAACTTAT 195501 30 100.0 35 .............................. AACGAGGGATTAAAAATGATATTACGGTATATTGA 195566 30 100.0 36 .............................. AATGAACTGACTATATAAAGCCGATTATTGCAAAAA 195632 30 100.0 35 .............................. AATACGCCAGCAGACATAGCACAAGACTTATGCGA 195697 30 100.0 36 .............................. GCAAGCGTTTTTAACGGCGGCGTCTACTGCAAAGAA 195763 30 100.0 194 .............................. AGCACTCAATCTACGCAATATAGGTAAAAATTAATTTTTTTGACAAGATTATATACATTAAAAATAGCTTAATGCACACATGATCTTTTTGCATTTTCCCCTATGAGTAGATGTTTAATAAAGCTTTAAAAAAGCTTTATTGAGTTCTTTCAAATATTTTTTATTTTTTCTAAAAAATAAAAAAACTCAATTAA 195987 30 70.0 0 A..T....A..T..TA.AAC.......... | ========== ====== ====== ====== ============================== ================================================================================================================================================================================================== ================== 62 30 99.3 39 GTTCTAAACTTCCAATACTTTATTTAAAAC # Left flank : TCAAGCGGCATTCTTTTCAGATAACCGCCGTAAATCCAACAGGGAACTCTTTGAAGATGTACTCAAGCGTTGCCTGTGGGTATTGCCACTTAAAGAGTGGGTGGGCTACTGGCAAGGGAATCACCGTCAAGGTGAGTTAATCGGAATGAAAGCCTTTGCCCCCGAAGAGATTTCACAAAACTACTTCAAGCGATTAGAAGAACAAATGAAGTATGATGAAATGCTGTTAGCTGCGTAGATTGCAATAGCCTTAGCGATATTTCATCAAATTTAAATAGAAAGGGATAATTAGCTTACCGAAATCACGGTCGAGCGGATTTCTCACGCCTAAATCAGCGGAAAATGAAGAATTTGCGTGAAAAATCGCGTAGAATTTCAGGAAAAATAAATGCCTTTTACAAGATCATCTCGGAAAGGCATTTAATTTATAATGCGACGTTAGTCAATTTTCGGACTTTGTGCAACTGCTACATAATACCGAAGAAAAAGGCACGTTTATT # Right flank : CATTTTAATTAACAATAATAAGTTAAATAACTTGACTACTATAGAAATATACTCGGTATATTTTGAGCCGAGTATATCAATTTAAAGTTTAAAATTTAGAAATAAGCTCTATATTTTCTTTGGTGGCTTTTTTTAGAAATTCAGAATAAGCCATGTATGCCTCTTCAAATTCGTTTTTAAGTTTTACGCTCAATTCAGCATTAAAGATATAGCTGTTGTCGCTTGATCTTTGCATTGTTAAGCTCGTACTTTTGTTTGCATCTTCTATACGTATATCGATAACTCCAAATCCTATGTTTTGACTAGATCCGAGTCGGCCGTTTTCTATAAAACCTTCAAGGGCGTGCAAGAACATCCCTAACTCGAGTTTTGACACTTTTTCTAAGAAAAAGCCACCGTTAAAAGTTGCTCCAGATACTATATATTCCCTTTGGGCGAAGTGCTGAATTGACGATTTTTTGGTTTTCGTATCTTCATTAAAAGATTCAGTTGTCTCTTTT # Questionable array : NO Score: 2.98 # Score Detail : 1:0, 2:0, 3:0, 4:0.96, 5:0, 6:0.25, 7:-0.23, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCTAAACTTCCAATACTTTATTTAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:76.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [2-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [63.3-81.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.27 Confidence: LOW] # Array family : NA //